From c41e5530d7173c8306e64d6ad662b9fb815d0946 Mon Sep 17 00:00:00 2001 From: imsdu Date: Tue, 26 Nov 2024 12:53:25 +0000 Subject: [PATCH] deploy: eaeb455a69b9d3e68acc4dbf83e5e06c47f052d2 --- paradox.json | 2 +- snapshot/docs/delta/api/acls-api.html | 20 +- snapshot/docs/delta/api/archives-api.html | 20 +- .../docs/delta/api/assets/history/request.sh | 2 +- .../delta/api/assets/jira/access-token.sh | 4 - .../assets/jira/request-token-response.json | 3 - .../delta/api/assets/jira/request-token.sh | 1 - snapshot/docs/delta/api/assets/version.json | 4 +- snapshot/docs/delta/api/authentication.html | 20 +- .../docs/delta/api/conditional-requests.html | 20 +- .../docs/delta/api/content-negotiation.html | 20 +- snapshot/docs/delta/api/error-signaling.html | 20 +- snapshot/docs/delta/api/files-api.html | 22 +- .../docs/delta/api/graph-analytics-api.html | 24 +- snapshot/docs/delta/api/history.html | 24 +- snapshot/docs/delta/api/id-resolution.html | 20 +- snapshot/docs/delta/api/identities.html | 20 +- snapshot/docs/delta/api/index.html | 20 +- snapshot/docs/delta/api/jira.html | 434 ------------------ snapshot/docs/delta/api/multi-fetch.html | 20 +- snapshot/docs/delta/api/orgs-api.html | 20 +- snapshot/docs/delta/api/permissions-api.html | 20 +- snapshot/docs/delta/api/projects-api.html | 22 +- snapshot/docs/delta/api/quotas.html | 20 +- snapshot/docs/delta/api/realms-api.html | 20 +- snapshot/docs/delta/api/resolvers-api.html | 22 +- snapshot/docs/delta/api/resources-api.html | 22 +- snapshot/docs/delta/api/schemas-api.html | 22 +- snapshot/docs/delta/api/search-api.html | 22 +- snapshot/docs/delta/api/storages-api.html | 22 +- snapshot/docs/delta/api/supervision-api.html | 26 +- snapshot/docs/delta/api/trial.html | 20 +- .../docs/delta/api/type-hierarchy-api.html | 20 +- .../docs/delta/api/user-permissions-api.html | 20 +- snapshot/docs/delta/api/version.html | 24 +- .../api/views/aggregated-es-view-api.html | 22 +- .../api/views/aggregated-sparql-view-api.html | 20 +- .../docs/delta/api/views/composite-sink.html | 22 +- .../delta/api/views/composite-view-api.html | 22 +- .../api/views/elasticsearch-view-api.html | 22 +- snapshot/docs/delta/api/views/index.html | 20 +- snapshot/docs/delta/api/views/pipes.html | 20 +- .../docs/delta/api/views/sparql-view-api.html | 22 +- snapshot/docs/delta/architecture.html | 20 +- snapshot/docs/delta/benchmarks/index.html | 20 +- snapshot/docs/delta/benchmarks/v1.2.1.html | 20 +- snapshot/docs/delta/benchmarks/v1.4.2.html | 20 +- snapshot/docs/delta/index.html | 20 +- snapshot/docs/delta/metadata.html | 20 +- snapshot/docs/delta/plugins/index.html | 21 +- snapshot/docs/faq.html | 24 +- snapshot/docs/forge.html | 20 +- snapshot/docs/fusion/architecture.html | 20 +- snapshot/docs/fusion/index.html | 24 +- snapshot/docs/fusion/my-data.html | 20 +- snapshot/docs/fusion/organizations.html | 20 +- snapshot/docs/fusion/plugins.html | 20 +- snapshot/docs/fusion/project.html | 20 +- snapshot/docs/fusion/projects.html | 20 +- snapshot/docs/fusion/search.html | 20 +- snapshot/docs/fusion/studio.html | 20 +- snapshot/docs/fusion/studios.html | 20 +- snapshot/docs/getting-started/index.html | 22 +- .../getting-started/running-nexus/delta.html | 391 ---------------- .../getting-started/try-nexus-movielens.html | 22 +- snapshot/docs/getting-started/try-nexus.html | 22 +- .../understanding-knowledge-graphs.html | 20 +- snapshot/docs/index.html | 26 +- snapshot/docs/releases/index.html | 24 +- snapshot/docs/releases/older-releases.html | 24 +- .../docs/releases/v1.10-release-notes.html | 20 +- .../releases/v1.10-to-v1.11-migration.html | 20 +- .../docs/releases/v1.11-release-notes.html | 29 +- .../docs/releases/v1.5-to-v1.6-migration.html | 20 +- .../docs/releases/v1.6-release-notes.html | 28 +- .../docs/releases/v1.6-to-v1.7-migration.html | 20 +- .../docs/releases/v1.7-release-notes.html | 22 +- .../docs/releases/v1.7-to-v1.8-migration.html | 22 +- .../docs/releases/v1.8-release-notes.html | 22 +- .../docs/releases/v1.8-to-v1.9-migration.html | 22 +- .../docs/releases/v1.9-release-notes.html | 26 +- .../releases/v1.9-to-v1.10-migration.html | 20 +- snapshot/docs/roadmap.html | 354 -------------- .../running-nexus/blazegraph.html | 236 +++++----- .../running-nexus/configuration/index.html | 349 +++++++------- .../running-nexus/configuration/logback.xml | 0 snapshot/docs/running-nexus/delta.html | 389 ++++++++++++++++ .../running-nexus/docker/delta.conf | 0 .../running-nexus/docker/docker-compose.yaml | 36 +- .../running-nexus/docker/nginx.conf | 0 .../running-nexus/elasticsearch.html | 228 +++++---- .../running-nexus/index.html | 288 ++++++------ .../running-nexus/postgresql.html | 252 +++++----- .../running-nexus/search-configuration.html | 244 +++++----- snapshot/docs/utilities/index.html | 20 +- snapshot/docs/versions.html | 20 +- snapshot/paradox.json | 2 +- snapshot/search/search_index.json | 2 +- v1.6.x/paradox.json | 2 +- v1.7.x/paradox.json | 2 +- v1.8.x/paradox.json | 2 +- v1.9.x/paradox.json | 2 +- 102 files changed, 1972 insertions(+), 2879 deletions(-) delete mode 100644 snapshot/docs/delta/api/assets/jira/access-token.sh delete mode 100644 snapshot/docs/delta/api/assets/jira/request-token-response.json delete mode 100644 snapshot/docs/delta/api/assets/jira/request-token.sh delete mode 100644 snapshot/docs/delta/api/jira.html delete mode 100644 snapshot/docs/getting-started/running-nexus/delta.html delete mode 100644 snapshot/docs/roadmap.html rename snapshot/docs/{getting-started => }/running-nexus/blazegraph.html (55%) rename snapshot/docs/{getting-started => }/running-nexus/configuration/index.html (61%) rename snapshot/docs/{getting-started => }/running-nexus/configuration/logback.xml (100%) create mode 100644 snapshot/docs/running-nexus/delta.html rename snapshot/docs/{getting-started => }/running-nexus/docker/delta.conf (100%) rename snapshot/docs/{getting-started => }/running-nexus/docker/docker-compose.yaml (64%) rename snapshot/docs/{getting-started => }/running-nexus/docker/nginx.conf (100%) rename snapshot/docs/{getting-started => }/running-nexus/elasticsearch.html (53%) rename snapshot/docs/{getting-started => }/running-nexus/index.html (59%) rename snapshot/docs/{getting-started => }/running-nexus/postgresql.html (57%) rename snapshot/docs/{getting-started => }/running-nexus/search-configuration.html (68%) diff --git a/paradox.json b/paradox.json index 01c127ef8e..0ac6aa13e2 100644 --- a/paradox.json +++ b/paradox.json @@ -1,4 +1,4 @@ { "name" : "docs", - "version" : "0.0.0+1-5d25f55a+20241112-0912-SNAPSHOT" + "version" : "0.0.0+1-5d25f55a+20241126-1250-SNAPSHOT" } \ No newline at end of file diff --git a/snapshot/docs/delta/api/acls-api.html b/snapshot/docs/delta/api/acls-api.html index 2877ad4daf..afed8601ab 100644 --- a/snapshot/docs/delta/api/acls-api.html +++ b/snapshot/docs/delta/api/acls-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/archives-api.html b/snapshot/docs/delta/api/archives-api.html index 3e5f12ac83..b213061933 100644 --- a/snapshot/docs/delta/api/archives-api.html +++ b/snapshot/docs/delta/api/archives-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/assets/history/request.sh b/snapshot/docs/delta/api/assets/history/request.sh index f4cd539483..f7dcffee9b 100644 --- a/snapshot/docs/delta/api/assets/history/request.sh +++ b/snapshot/docs/delta/api/assets/history/request.sh @@ -1 +1 @@ -curl "http://localhost:8080/v1/org/project/https%3A%2F%2Fexample.com%2FAlice" \ No newline at end of file +curl "http://localhost:8080/v1/history/resources/org/project/https%3A%2F%2Fexample.com%2FAlice" \ No newline at end of file diff --git a/snapshot/docs/delta/api/assets/jira/access-token.sh b/snapshot/docs/delta/api/assets/jira/access-token.sh deleted file mode 100644 index 5ebe99b590..0000000000 --- a/snapshot/docs/delta/api/assets/jira/access-token.sh +++ /dev/null @@ -1,4 +0,0 @@ -curl -X POST "http://localhost:8080/v1/jira/request-token" -d \ - '{ - "value": "MY_CODE" - }' \ No newline at end of file diff --git a/snapshot/docs/delta/api/assets/jira/request-token-response.json b/snapshot/docs/delta/api/assets/jira/request-token-response.json deleted file mode 100644 index a4038cff01..0000000000 --- a/snapshot/docs/delta/api/assets/jira/request-token-response.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "value": "https://my-jira-instance/plugins/servlet/oauth/authorize?oauth_token=TEMP_TOKEN" -} \ No newline at end of file diff --git a/snapshot/docs/delta/api/assets/jira/request-token.sh b/snapshot/docs/delta/api/assets/jira/request-token.sh deleted file mode 100644 index 6499cf11e4..0000000000 --- a/snapshot/docs/delta/api/assets/jira/request-token.sh +++ /dev/null @@ -1 +0,0 @@ -curl -X POST "http://localhost:8080/v1/jira/request-token" \ No newline at end of file diff --git a/snapshot/docs/delta/api/assets/version.json b/snapshot/docs/delta/api/assets/version.json index ed1df9bdff..ee6d30fab6 100644 --- a/snapshot/docs/delta/api/assets/version.json +++ b/snapshot/docs/delta/api/assets/version.json @@ -3,8 +3,8 @@ "delta": "1.10.0", "dependencies": { "blazegraph": "2.1.6-RC-21-jre", - "postgresql": "16.4", - "elasticsearch": "8.15.1" + "postgresql": "17.2", + "elasticsearch": "8.16.1" }, "plugins": { "archive": "1.10.0", diff --git a/snapshot/docs/delta/api/authentication.html b/snapshot/docs/delta/api/authentication.html index bcbbfb8cd9..7b362d6d0a 100644 --- a/snapshot/docs/delta/api/authentication.html +++ b/snapshot/docs/delta/api/authentication.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/conditional-requests.html b/snapshot/docs/delta/api/conditional-requests.html index 8a9e3893a1..43f3cfbfe2 100644 --- a/snapshot/docs/delta/api/conditional-requests.html +++ b/snapshot/docs/delta/api/conditional-requests.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
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  • Roadmap
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    • diff --git a/snapshot/docs/delta/api/content-negotiation.html b/snapshot/docs/delta/api/content-negotiation.html index 911fd39e66..86f0938d77 100644 --- a/snapshot/docs/delta/api/content-negotiation.html +++ b/snapshot/docs/delta/api/content-negotiation.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
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    • diff --git a/snapshot/docs/delta/api/error-signaling.html b/snapshot/docs/delta/api/error-signaling.html index 9c0cb55692..a777cb1768 100644 --- a/snapshot/docs/delta/api/error-signaling.html +++ b/snapshot/docs/delta/api/error-signaling.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
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  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/files-api.html b/snapshot/docs/delta/api/files-api.html index dd0f3e23c6..2d138630f0 100644 --- a/snapshot/docs/delta/api/files-api.html +++ b/snapshot/docs/delta/api/files-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
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  • Roadmap
  • Nexus Fusion
    • @@ -1154,7 +1152,7 @@

    -

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    +

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    Fetch tags

    Retrieves all the tags available for the {file_id}.

    GET /v1/files/{org_label}/{project_label}/{file_id}/tags?rev={rev}&tag={tag}
diff --git a/snapshot/docs/delta/api/graph-analytics-api.html b/snapshot/docs/delta/api/graph-analytics-api.html
index 73c8a432c1..f54906f7a7 100644
--- a/snapshot/docs/delta/api/graph-analytics-api.html
+++ b/snapshot/docs/delta/api/graph-analytics-api.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
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  • Try Nexus with the MovieLens Dataset
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  • Running Nexus
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@@ -702,13 +700,13 @@ 
    
 
 
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    <
 
    When performing a request, the caller must have resources/read permission on the project the resource belongs to.
    
 
    Please visit Authentication & authorization section to learn more about it.
    Note
    
 
    The described endpoints are experimental and the responses structure might change in the future.
    
-
    GET /v1/history/{org_label}/{project_label}/{id}
+
    GET /v1/history/resources/{org_label}/{project_label}/{id}
 
    
 
    where…
    
 
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diff --git a/snapshot/docs/delta/api/identities.html b/snapshot/docs/delta/api/identities.html
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diff --git a/snapshot/docs/delta/api/index.html b/snapshot/docs/delta/api/index.html
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diff --git a/snapshot/docs/delta/api/jira.html b/snapshot/docs/delta/api/jira.html
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    Jira integration
    
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    The Jira integration plugin comes from the need at BBP to have the Nexus platform and Jira to interact by linking Nexus resources and Jira issues.
    
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    The Jira server API only allows to authenticate clients using the OAuth 1.0a protocol. This implies some set-up on the server-side so a minimal plugin was introduced in Delta to handle the authorization flow and to expose the Jira API operations needed by Nexus fusion to link Nexus resources and Jira issues.
    
-
    A guide introducing OAuth and how to integrate with Jira using it with more details is available on the Atlassian website
    Authorization notes
    
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    Like the other endpoints in Delta, clients still have to present a valid token.
    
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    To have access to the different endpoints provided by this plugin, the user must first grant Delta to access to their information and to act on their behalf as defined by the authorization workflow presented here.
    
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    As Nexus impersonates the user when interacting with Jira, it will do it with the same permissions as the user. Nexus does not perform any additional permission checks, it relies fully on Jira to perform this task.
    
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    Request token
    
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    POST /v1/jira/request-token
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    Example
    
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-}
    
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diff --git a/snapshot/docs/delta/api/multi-fetch.html b/snapshot/docs/delta/api/multi-fetch.html
index 71d36838d4..cf990fd10b 100644
--- a/snapshot/docs/delta/api/multi-fetch.html
+++ b/snapshot/docs/delta/api/multi-fetch.html
@@ -146,15 +146,15 @@
     
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diff --git a/snapshot/docs/delta/api/orgs-api.html b/snapshot/docs/delta/api/orgs-api.html
index 3a5ba67ac0..ea9de02276 100644
--- a/snapshot/docs/delta/api/orgs-api.html
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@@ -146,15 +146,15 @@
     
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diff --git a/snapshot/docs/delta/api/permissions-api.html b/snapshot/docs/delta/api/permissions-api.html
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@@ -146,15 +146,15 @@
     
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diff --git a/snapshot/docs/delta/api/projects-api.html b/snapshot/docs/delta/api/projects-api.html
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    • 
@@ -988,7 +986,7 @@ 
    redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the project will be returned.
    
+
    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the project will be returned.
    
 
    Fetch (specific version)
    
 
    GET /v1/projects/{org_label}/{label}?rev={rev}
 
    
diff --git a/snapshot/docs/delta/api/quotas.html b/snapshot/docs/delta/api/quotas.html
index 99e50d83e6..67eb9627dc 100644
--- a/snapshot/docs/delta/api/quotas.html
+++ b/snapshot/docs/delta/api/quotas.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
    • 
     
  • Try Nexus with the MovieLens Dataset
    • 
-    
  • Running Nexus
-    
    • 
+  
+  
  • Running Nexus
+  
    • 
   
  • Releases
   
    • 
-  
  • Roadmap
    • 
   
  • Nexus Fusion
   
    • 
diff --git a/snapshot/docs/delta/api/realms-api.html b/snapshot/docs/delta/api/realms-api.html
index 3a8c9455c8..11c4d42426 100644
--- a/snapshot/docs/delta/api/realms-api.html
+++ b/snapshot/docs/delta/api/realms-api.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
    • 
     
  • Try Nexus with the MovieLens Dataset
    • 
-    
  • Running Nexus
-    
    • 
+  
+  
  • Running Nexus
+  
    • 
   
  • Releases
   
    • 
-  
  • Roadmap
    • 
   
  • Nexus Fusion
   
    • 
diff --git a/snapshot/docs/delta/api/resolvers-api.html b/snapshot/docs/delta/api/resolvers-api.html
index 2cbd870c17..631481d7f4 100644
--- a/snapshot/docs/delta/api/resolvers-api.html
+++ b/snapshot/docs/delta/api/resolvers-api.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
    • 
     
  • Try Nexus with the MovieLens Dataset
    • 
-    
  • Running Nexus
-    
    • 
+  
+  
  • Running Nexus
+  
    • 
   
  • Releases
   
    • 
-  
  • Roadmap
    • 
   
  • Nexus Fusion
   
    • 
@@ -694,7 +692,7 @@ 
    
 
-
    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.
    
+
    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.
    
 
    Fetch original payload
    
 
    GET /v1/resolvers/{org_label}/{project_label}/{resolver_id}/source?rev={rev}
 
    
diff --git a/snapshot/docs/delta/api/resources-api.html b/snapshot/docs/delta/api/resources-api.html
index 0af553856d..0e57b47213 100644
--- a/snapshot/docs/delta/api/resources-api.html
+++ b/snapshot/docs/delta/api/resources-api.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
    • 
     
  • Try Nexus with the MovieLens Dataset
    • 
-    
  • Running Nexus
-    
    • 
+  
+  
  • Running Nexus
+  
    • 
   
  • Releases
   
    • 
-  
  • Roadmap
    • 
   
  • Nexus Fusion
   
    • 
@@ -839,7 +837,7 @@
    -

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    +

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    Fetch original payload

    GET /v1/resources/{org_label}/{project_label}/{schema_id}/{resource_id}/source?rev={rev}&tag={tag}&annotate={annotate}
    diff --git a/snapshot/docs/delta/api/schemas-api.html b/snapshot/docs/delta/api/schemas-api.html index c278d14dff..38d5d6ecac 100644 --- a/snapshot/docs/delta/api/schemas-api.html +++ b/snapshot/docs/delta/api/schemas-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -909,7 +907,7 @@

    -

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    +

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    Fetch original payload

    GET /v1/schemas/{org_label}/{project_label}/{schema_id}/source?rev={rev}&tag={tag}&annotate={annotate}
    diff --git a/snapshot/docs/delta/api/search-api.html b/snapshot/docs/delta/api/search-api.html index ca15c7bf4d..647a5df52e 100644 --- a/snapshot/docs/delta/api/search-api.html +++ b/snapshot/docs/delta/api/search-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -306,7 +304,7 @@

    Search configuration page.

    Api Mapping
    +

    For instructions on how to configure global search in Nexus and how it works please visit the Search configuration page.

    Api Mapping

    The underlying composite views can queried to monitor their indexing progress, to query their intermediate namespaces, …

    An API mapping search has been defined to make it easier:

    Example:

    diff --git a/snapshot/docs/delta/api/storages-api.html b/snapshot/docs/delta/api/storages-api.html index a74f8a30d9..3585c86f0f 100644 --- a/snapshot/docs/delta/api/storages-api.html +++ b/snapshot/docs/delta/api/storages-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -666,7 +664,7 @@

    -

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    +

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    Fetch original payload

    GET /v1/storages/{org_label}/{project_label}/{storage_id}/source?rev={rev}
    diff --git a/snapshot/docs/delta/api/supervision-api.html b/snapshot/docs/delta/api/supervision-api.html index b42ff45624..c2728c9594 100644 --- a/snapshot/docs/delta/api/supervision-api.html +++ b/snapshot/docs/delta/api/supervision-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -400,7 +398,7 @@

    Blazegraph

    This endpoint allows to return the total number of triples for all blazegraph views and the number of triples per individual view.

    The unassigned part allows to spot orphan namespaces, that is to say namespaces which may not have been properly deleted when a view got modified or deprecated.

    -

    This is an indicator which helps to scale correctly the Blazegraph instance.

    +

    This is an indicator which helps to scale correctly the Blazegraph instance.

    GET /v1/supervision/blazegraph
    @@ -453,7 +451,7 @@

    diff --git a/snapshot/docs/delta/api/trial.html b/snapshot/docs/delta/api/trial.html index a13d5d1892..69ebc5844b 100644 --- a/snapshot/docs/delta/api/trial.html +++ b/snapshot/docs/delta/api/trial.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/type-hierarchy-api.html b/snapshot/docs/delta/api/type-hierarchy-api.html index 5a40736b7c..67764b6d39 100644 --- a/snapshot/docs/delta/api/type-hierarchy-api.html +++ b/snapshot/docs/delta/api/type-hierarchy-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/user-permissions-api.html b/snapshot/docs/delta/api/user-permissions-api.html index 0b27efdafe..8bdb48ccb2 100644 --- a/snapshot/docs/delta/api/user-permissions-api.html +++ b/snapshot/docs/delta/api/user-permissions-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/version.html b/snapshot/docs/delta/api/version.html index 8ade08f7d6..dc63a258b3 100644 --- a/snapshot/docs/delta/api/version.html +++ b/snapshot/docs/delta/api/version.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -280,8 +278,8 @@

    < "delta": "1.10.0", "dependencies": { "blazegraph": "2.1.6-RC-21-jre", - "postgresql": "16.4", - "elasticsearch": "8.15.1" + "postgresql": "17.2", + "elasticsearch": "8.16.1" }, "plugins": { "archive": "1.10.0", diff --git a/snapshot/docs/delta/api/views/aggregated-es-view-api.html b/snapshot/docs/delta/api/views/aggregated-es-view-api.html index 42fa38d855..65b1dba2fe 100644 --- a/snapshot/docs/delta/api/views/aggregated-es-view-api.html +++ b/snapshot/docs/delta/api/views/aggregated-es-view-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -308,7 +306,7 @@

    AggregateElasticSearchView

    This view is an aggregate of ElasticSearchViews. The view itself does not create any index, but it references the already existing indices of the linked ElasticSearchViews.

    Note

    From Delta version 1.5.0, AggregateElasticSearchView can point to other AggregateElasticSearchViews.

    -

    When performing queries on the _search endpoint, this view will make use of the multi-index query capabilities of ElasticSearch in order to select the indices of every view present on this aggregate view.

    +

    When performing queries on the _search endpoint, this view will make use of the multi-index query capabilities of ElasticSearch in order to select the indices of every view present on this aggregate view.

    If the caller does not have the permission views/query (or from v1.5, the user-defined permission) on all the views defined on the aggregated view, only a subset of indices (or none) will be selected, respecting the defined permissions.

    Aggregate ElasticSearchView

    Payload

    diff --git a/snapshot/docs/delta/api/views/aggregated-sparql-view-api.html b/snapshot/docs/delta/api/views/aggregated-sparql-view-api.html index 931b2b66ae..4f88d7c927 100644 --- a/snapshot/docs/delta/api/views/aggregated-sparql-view-api.html +++ b/snapshot/docs/delta/api/views/aggregated-sparql-view-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/api/views/composite-sink.html b/snapshot/docs/delta/api/views/composite-sink.html index c6f9d21538..a52e2fc692 100644 --- a/snapshot/docs/delta/api/views/composite-sink.html +++ b/snapshot/docs/delta/api/views/composite-sink.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -323,7 +321,7 @@

    Single Composite Sink

    By default, Nexus Delta will use the Single Composite Sink. This sink performs one query to the Blazegraph common namespace for each resource in the project. The queries are done in chronological order (by the updatedAt time of the resources).

    -

    We recommend reading through the search configuration example use case and the Composite View API reference to learn more about Composite Views.

    +

    We recommend reading through the search configuration example use case and the Composite View API reference to learn more about Composite Views.

    Batch Composite Sink

    Starting with Delta 1.9, it is possible to configure Nexus Delta to use a Batch Composite Sink. This implementation of the Composite Sink can query the Blazegraph common namespace for multiple resource IDs at the same time.

    Note

    We recommend to start using Composite Views with the default Single Composite Sink. Once you have a good understanding of it, the Batch Composite Sink can be used to enhance the performance of your deployment.

    diff --git a/snapshot/docs/delta/api/views/composite-view-api.html b/snapshot/docs/delta/api/views/composite-view-api.html index d696600fe3..568d71a812 100644 --- a/snapshot/docs/delta/api/views/composite-view-api.html +++ b/snapshot/docs/delta/api/views/composite-view-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -1485,7 +1483,7 @@

    -

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    +

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    Fetch original payload

    GET /v1/views/{org_label}/{project_label}/{view_id}/source?rev={rev}
    diff --git a/snapshot/docs/delta/api/views/elasticsearch-view-api.html b/snapshot/docs/delta/api/views/elasticsearch-view-api.html index 50aa1db096..7c44484aba 100644 --- a/snapshot/docs/delta/api/views/elasticsearch-view-api.html +++ b/snapshot/docs/delta/api/views/elasticsearch-view-api.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -921,7 +919,7 @@

    -

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    +

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    Note that for retro-compatibility purposes, fetching an elasticsearch view returns legacy fields.

    Fetch original payload

    GET /v1/views/{org_label}/{project_label}/{view_id}/source?rev={rev}
diff --git a/snapshot/docs/delta/api/views/index.html b/snapshot/docs/delta/api/views/index.html
index 3fcc2f1839..a5e1e88b8f 100644
--- a/snapshot/docs/delta/api/views/index.html
+++ b/snapshot/docs/delta/api/views/index.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
    • 
     
  • Try Nexus with the MovieLens Dataset
    • 
-    
  • Running Nexus
-    
    • 
+  
+  
  • Running Nexus
+  
    • 
   
  • Releases
   
    • 
-  
  • Roadmap
    • 
   
  • Nexus Fusion
   
    • 
diff --git a/snapshot/docs/delta/api/views/pipes.html b/snapshot/docs/delta/api/views/pipes.html
index f12df2148b..8270979e3e 100644
--- a/snapshot/docs/delta/api/views/pipes.html
+++ b/snapshot/docs/delta/api/views/pipes.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
    • 
     
  • Try Nexus with the MovieLens Dataset
    • 
-    
  • Running Nexus
-    
    • 
+  
+  
  • Running Nexus
+  
    • 
   
  • Releases
   
    • 
-  
  • Roadmap
    • 
   
  • Nexus Fusion
   
    • 
diff --git a/snapshot/docs/delta/api/views/sparql-view-api.html b/snapshot/docs/delta/api/views/sparql-view-api.html
index 5c5e65fb49..756c1a071d 100644
--- a/snapshot/docs/delta/api/views/sparql-view-api.html
+++ b/snapshot/docs/delta/api/views/sparql-view-api.html
@@ -146,15 +146,15 @@
     
  • Understanding Knowledge Graphs
    • 
     
  • Try Nexus with Neuroscience Datasets
    • 
     
  • Try Nexus with the MovieLens Dataset
    • 
-    
  • Running Nexus
-    
    • 
+  
+  
  • Running Nexus
+  
    • 
   
  • Releases
   
    • 
-  
  • Roadmap
    • 
   
  • Nexus Fusion
   
    • 
@@ -692,7 +690,7 @@
    -

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    +

    If the redirect to Fusion feature is enabled and if the Accept header is set to text/html, a redirection to the fusion representation of the resource will be returned.

    Fetch original payload

    GET /v1/views/{org_label}/{project_label}/{view_id}/source?rev={rev}
    diff --git a/snapshot/docs/delta/architecture.html b/snapshot/docs/delta/architecture.html index 0e56f05275..588dd1a848 100644 --- a/snapshot/docs/delta/architecture.html +++ b/snapshot/docs/delta/architecture.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/benchmarks/index.html b/snapshot/docs/delta/benchmarks/index.html index ca65cad6ec..7750e6cde2 100644 --- a/snapshot/docs/delta/benchmarks/index.html +++ b/snapshot/docs/delta/benchmarks/index.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/benchmarks/v1.2.1.html b/snapshot/docs/delta/benchmarks/v1.2.1.html index 8f979d4434..cafa5c980e 100644 --- a/snapshot/docs/delta/benchmarks/v1.2.1.html +++ b/snapshot/docs/delta/benchmarks/v1.2.1.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/benchmarks/v1.4.2.html b/snapshot/docs/delta/benchmarks/v1.4.2.html index cf0a4a0f8b..e3e26f082a 100644 --- a/snapshot/docs/delta/benchmarks/v1.4.2.html +++ b/snapshot/docs/delta/benchmarks/v1.4.2.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/index.html b/snapshot/docs/delta/index.html index e86b7b3e8d..a1071da3dd 100644 --- a/snapshot/docs/delta/index.html +++ b/snapshot/docs/delta/index.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/metadata.html b/snapshot/docs/delta/metadata.html index 1dda82813d..25265d0e95 100644 --- a/snapshot/docs/delta/metadata.html +++ b/snapshot/docs/delta/metadata.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/delta/plugins/index.html b/snapshot/docs/delta/plugins/index.html index dff295ff40..c0b699cf9d 100644 --- a/snapshot/docs/delta/plugins/index.html +++ b/snapshot/docs/delta/plugins/index.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -428,7 +426,6 @@

    files and storages API Reference | code
  • global search API Reference | code
  • graph analytics API Reference | code
    • -
  • Jira API Reference | code

    • Elasticsearch plugin is required in order to provide listings in the API, other plugins can be excluded if their functionality is not needed. All the above plugins are included in the Delta Docker image.

    diff --git a/snapshot/docs/faq.html b/snapshot/docs/faq.html index d3caacc0b4..c96aa69d44 100644 --- a/snapshot/docs/faq.html +++ b/snapshot/docs/faq.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
    • -
  • Running Nexus -
    • + +
  • Running Nexus +
  • Releases
    • -
  • Roadmap
  • Nexus Fusion
    • @@ -349,7 +347,7 @@

    Apache Licence 2.0

    How do I run Blue Brain Nexus?

    There are many ways to run Nexus. Our public Sandbox is running here and you can use it to test Nexus on small, non-sensitive data. Our tutorial can help you to run Nexus step by step.

    -

    Meanwhile if you want to run it locally you can do so using Docker. You can also deploy Nexus “on premise”, as a single instance or as a cluster. Blue Brain Nexus has also been deployed and tested on AWS using Kubernetes.

    +

    Meanwhile if you want to run it locally you can do so using Docker. You can also deploy Nexus “on premise”, as a single instance or as a cluster. Blue Brain Nexus has also been deployed and tested on AWS using Kubernetes.

    How can I try Blue Brain Nexus without installing it?

    The Sandbox provides a public instance that can serve as a testbed. Be aware that the content of the Sandbox is regularly purged.

    What is the difference with a relational database like PostgreSQL?

    @@ -377,7 +375,7 @@

    Technical FAQ

    What are the clients I can use with Blue Brain Nexus? What are the requirements to run Blue Brain Nexus locally?

    -

    On macOS and Windows, Docker effectively runs containers inside a VM created by the system hypervisor. Nexus requires at least 2 CPUs and 8 GB of memory in total. You can increase the limits in Docker settings in the menu Preferences > Advanced. More details are in the dedicated page.

    +

    On macOS and Windows, Docker effectively runs containers inside a VM created by the system hypervisor. Nexus requires at least 2 CPUs and 8 GB of memory in total. You can increase the limits in Docker settings in the menu Preferences > Advanced. More details are in the dedicated page.

    What is JSON-LD?

    JSON-LD is a JavaScript Object Notation for Linked Data. A JSON-LD payload is then converted to an RDF Graph for validation purposes and for ingestion in the Knowledge Graph. In order to find more information about JSON-LD, please visit this page, please visit the section this page

    How can I represent lists on JSON-LD?

    diff --git a/snapshot/docs/forge.html b/snapshot/docs/forge.html index 43452c25fd..021d600706 100644 --- a/snapshot/docs/forge.html +++ b/snapshot/docs/forge.html @@ -146,15 +146,15 @@
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    • diff --git a/snapshot/docs/getting-started/index.html b/snapshot/docs/getting-started/index.html index 14e2db8087..1ace8117b5 100644 --- a/snapshot/docs/getting-started/index.html +++ b/snapshot/docs/getting-started/index.html @@ -146,15 +146,15 @@
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    • @@ -271,7 +269,7 @@

    Getting Started

    The Nexus ecosystem is a data catalog with several technologies and techniques used to get insight and explore the data within the ecosystem.

    One of the powerful ways to query data is through the Knowledge Graph built in Nexus. For that reason we encourage you to get familiar with these concepts reading Understanding Knowledge Graphs.

    -

    The next steps would be to either try Nexus using the Sandbox deployment or run Nexus locally.

    +

    The next steps would be to either try Nexus using the Sandbox deployment or run Nexus locally.

    diff --git a/snapshot/docs/getting-started/running-nexus/delta.html b/snapshot/docs/getting-started/running-nexus/delta.html deleted file mode 100644 index 827ed748da..0000000000 --- a/snapshot/docs/getting-started/running-nexus/delta.html +++ /dev/null @@ -1,391 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - -Nexus Delta · Blue Brain Nexus - - - - - - - - - - - - - - - - - -
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    -You are browsing the docs for the snapshot version of Nexus, -the latest release is available here -

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    Nexus Delta

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    Running and monitoring

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    CPU: It suggests heavy indexing and read operations. It is likely to happen when reindexing a large amount of views at the same time but if it happens regularly:

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    • Review which indexing process is going on by querying the projection_offsets and composite_offsets table
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    • Allocate more resources to Delta
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    Memory and garbage collection: Delta will use the available RAM in 2 ways, JVM heap and the file system cache so like Elasticsearch, the JVM garbage collection frequency and duration are also important to monitor.

    Note
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    JVM and host metrics (including those related to the heap) are collected by Kamon

    -

    Storage: The different types of storage (local, S3) need to be monitored for availability/performance/utilization

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    Metrics: Nexus Delta relies on Kamon to also collect metrics about the execution of most operations (fetching a resource, query Blazegraph, etc…)

    -

    To enable Kamon in Delta, the KAMON_ENABLED env variable must be set to true.

    -

    To monitor Nexus write activity like resource and file creation/updates, a dashboard is available in the Nexus repo.

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    Logs: Nexus Delta relies on Logback for logs which one of the popular logging frameworks on the JVM.

    -

    Logback provides:

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    • Reloading the configuration while the application is running
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    • Control the output of the logs, opting for JSON helps for the integration with Filebeats and Elasticsearch for log aggregation
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    An example of logback configuration writing logs as json in files is available here

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    - - - - - - - - - diff --git a/snapshot/docs/getting-started/try-nexus-movielens.html b/snapshot/docs/getting-started/try-nexus-movielens.html index 92f825695c..b6a252a585 100644 --- a/snapshot/docs/getting-started/try-nexus-movielens.html +++ b/snapshot/docs/getting-started/try-nexus-movielens.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
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    • @@ -458,7 +456,7 @@

  • Understanding Knowledge Graphs
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    • @@ -458,7 +456,7 @@

    Sandbox Home

    Navigate to the correct organisation then search or scroll down to find your project (i.e. your username). You will need the names of the organisation and project for the next parts of the tutorial.

    1.2. Running your Own Instance of Nexus

    -

    We do not recommend to setup your own instance for this tutorial. If you are interested to install your own instance, check our guide.

    +

    We do not recommend to setup your own instance for this tutorial. If you are interested to install your own instance, check our guide.

    Step 2: Download and Register Data from a Single Source

    In this section, you will learn about metadata (and MINDS), provenance, and integrate data from the Allen Institute for Brain Science in Nexus.

    2.1. Data vs Metadata

    diff --git a/snapshot/docs/getting-started/understanding-knowledge-graphs.html b/snapshot/docs/getting-started/understanding-knowledge-graphs.html index e96b6bf5b5..3cec508f4a 100644 --- a/snapshot/docs/getting-started/understanding-knowledge-graphs.html +++ b/snapshot/docs/getting-started/understanding-knowledge-graphs.html @@ -146,15 +146,15 @@
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  • Quick Start Guide
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  • Quick Start Guide
  • Versions
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  • Roadmap
    • @@ -326,12 +322,10 @@

    Quick Start Guide

    Do you know know what a knowledge graph is? Or want to deepen your understanding? Follow our introduction.

    Want to get started with Nexus right away? We provide a tutorial that uses our sandbox environment to let you try the functionalities.

    -

    Ready to deploy your own instance of Nexus? Follow our guide.

    +

    Ready to deploy your own instance of Nexus? Follow our guide.

    Versions

    Looking for docs for another release of Nexus ?

    List of versions

    -

    Roadmap

    -

    Curious about our upcoming features? Read our open Roadmap to find out more.

    diff --git a/snapshot/docs/releases/index.html b/snapshot/docs/releases/index.html index 0f1e5918e6..1acd0100cb 100644 --- a/snapshot/docs/releases/index.html +++ b/snapshot/docs/releases/index.html @@ -146,15 +146,15 @@
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    • @@ -387,7 +385,7 @@

    The items listed below are changes that have been made in this release that break compatibility with previous releases.

    • The Remote storage server implementation has been removed
      • -
    • +
    • The Jira integration plugin has been removed.

    New features/enhancements

    +
  • Running Nexus +
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    • @@ -301,13 +299,13 @@

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    • diff --git a/snapshot/docs/releases/v1.10-to-v1.11-migration.html b/snapshot/docs/releases/v1.10-to-v1.11-migration.html index 37c09b9648..49dc726b89 100644 --- a/snapshot/docs/releases/v1.10-to-v1.11-migration.html +++ b/snapshot/docs/releases/v1.10-to-v1.11-migration.html @@ -146,15 +146,15 @@
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    • diff --git a/snapshot/docs/releases/v1.11-release-notes.html b/snapshot/docs/releases/v1.11-release-notes.html index 759b2b6f07..78ed855bd7 100644 --- a/snapshot/docs/releases/v1.11-release-notes.html +++ b/snapshot/docs/releases/v1.11-release-notes.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
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    • @@ -254,6 +252,7 @@
  • Passivation
  • Conditional requests
  • Realm provisioning
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  • Acl provisioning
  • Remote storage server
  • Nexus Fusion
    • @@ -285,6 +284,7 @@
  • Passivation
  • Conditional requests
  • Realm provisioning
    • +
  • Acl provisioning
  • Remote storage server
  • Nexus Fusion
    • @@ -318,8 +318,11 @@

    <

    Nexus now supports conditional requests.

    More here

    Realm provisioning

    -

    Nexus now allows to provision realms at start up so as to simplify automated deployments.

    -

    More here

    +

    Nexus now allows to provision realms at start up to simplify automated deployments.

    +

    More here

    +

    Acl provisioning

    +

    Nexus now allows to provision acl at start up to simplify automated deployments.

    +

    More here

    Remote storage server

    The remote storage server part has been removed.

    The client is deprecated and remains compatible with the remote storage in 1.10.

    diff --git a/snapshot/docs/releases/v1.5-to-v1.6-migration.html b/snapshot/docs/releases/v1.5-to-v1.6-migration.html index c0dd37ab89..2480923d6f 100644 --- a/snapshot/docs/releases/v1.5-to-v1.6-migration.html +++ b/snapshot/docs/releases/v1.5-to-v1.6-migration.html @@ -146,15 +146,15 @@
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    • diff --git a/snapshot/docs/releases/v1.6-release-notes.html b/snapshot/docs/releases/v1.6-release-notes.html index 9c84779988..2a73a02681 100644 --- a/snapshot/docs/releases/v1.6-release-notes.html +++ b/snapshot/docs/releases/v1.6-release-notes.html @@ -146,15 +146,15 @@
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    • @@ -340,7 +338,7 @@

    For the detailed list of updates in this release, see the list of addressed issues since v1.5.

    If you are currently using Nexus Delta from 1.5.x, please visit the migration instructions for the necessary steps to successfully upgrade.

    Nexus Delta

    -

    The main goal of this release is to allow users to search across multiple projects through global search

    +

    The main goal of this release is to allow users to search across multiple projects through global search

    Secondary goals include:

    • The possibility for Delta to query a secured Elasticsearch cluster
      • @@ -369,10 +367,10 @@

      here

      +

      More details about search and how to configure it is provided here

      Please note that this first version is experimental in both Delta and Fusion and that improvements and possibly breaking changes may be introduced in the upcoming releases.

      Secure the Delta Elasticsearch client

      -

      With 1.6, it is now possible to define credentials to query a secured Elasticsearch cluster: Elasticsearch configuration.

      +

      With 1.6, it is now possible to define credentials to query a secured Elasticsearch cluster: Elasticsearch configuration.

      Dedicated Blazegraph client for user-defined queries

      User-defined queries could bring instability to Blazegraph because of their complexity. In 1.6, a dedicated client with a timeout which triggers a circuit breaker in Blazegraph has been introduced in order to solve that problem.

      Synchronous indexing

      @@ -386,7 +384,7 @@

      configured in order to be more or less strict.

      Automatic project provisioning

      When enabled, a dedicated project is created for the current user on its first access to the Nexus platform.

      -

      How to enable and configure it is detailed here

      +

      How to enable and configure it is detailed here

      Deletion of projects

      The deletion of projects and all its enclosed resources is now possible by enabling a configuration flag via a dedicated endpoint.

      Quotas

      diff --git a/snapshot/docs/releases/v1.6-to-v1.7-migration.html b/snapshot/docs/releases/v1.6-to-v1.7-migration.html index 380a7b9052..6350d646be 100644 --- a/snapshot/docs/releases/v1.6-to-v1.7-migration.html +++ b/snapshot/docs/releases/v1.6-to-v1.7-migration.html @@ -146,15 +146,15 @@
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    • @@ -400,7 +398,7 @@

    This change implies a migration when updating Nexus Delta to 1.7.

    Allow the use of an external configuration file for Delta

    Besides JVM properties and environment variables, Delta configuration can now be defined via a external file.

    -

    Read More about Delta configuration

    +

    Read More about Delta configuration

    Deleting tags on resources

    From 1.7, it is now possible to delete tags on resources, files and schemas.

    Tagging deprecated storages and views

    diff --git a/snapshot/docs/releases/v1.7-to-v1.8-migration.html b/snapshot/docs/releases/v1.7-to-v1.8-migration.html index 57bcad9cf4..ccc1f7be05 100644 --- a/snapshot/docs/releases/v1.7-to-v1.8-migration.html +++ b/snapshot/docs/releases/v1.7-to-v1.8-migration.html @@ -146,15 +146,15 @@
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    • @@ -623,7 +621,7 @@

    -

    For more information on the configuration of Delta, please refer to the Nexus configuration page.

    +

    For more information on the configuration of Delta, please refer to the Nexus configuration page.

    Migrating events from Cassandra to PostgreSQL

    Starting the data migration

    Start Delta v1.8 with the configuration described in the configuration section. As the application starts, the Delta log should contain the following lines:

    diff --git a/snapshot/docs/releases/v1.8-release-notes.html b/snapshot/docs/releases/v1.8-release-notes.html index 41bcb1a2cf..ba77b0fd26 100644 --- a/snapshot/docs/releases/v1.8-release-notes.html +++ b/snapshot/docs/releases/v1.8-release-notes.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
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    • @@ -369,7 +367,7 @@

    The data modeling it imposes did not allow to accommodate the growing variety of present and future usages of Nexus,
  • The eventual consistency was another hurdle for the Nexus usages
  • -

    The akka-persistence library we relied on which is part of the akka stack changed its license in September 2022, so we could not get new updates from it,

    • +

    The akka-persistence library we relied on which is part of the akka stack changed its license in September 2022, so we could not get new updates from it,

  • This library also did not fit anymore our needs in terms of indexing to external systems as performance is degrading over time but also for data deletion.

    • diff --git a/snapshot/docs/releases/v1.8-to-v1.9-migration.html b/snapshot/docs/releases/v1.8-to-v1.9-migration.html index f3696fd79e..8330da35a1 100644 --- a/snapshot/docs/releases/v1.8-to-v1.9-migration.html +++ b/snapshot/docs/releases/v1.8-to-v1.9-migration.html @@ -146,15 +146,15 @@
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    • -
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    • @@ -333,7 +331,7 @@

    Remote authentication

    Currently, both remote storages and composite views with remote sources can hold auth tokens for communications with these remote endpoints. In v1.9, we now expect authentication to be dealt with in the Delta configuration

    A remote storage might currently have a token stored in the storage definition. In 1.9, this should be moved to plugins.storage.storages.remote-disk.credentials.

    -

    A composite view might currently have a token stored in the view definition. In 1.9, this should be moved to plugins.composite-views.remote-source-credentials, as shown here

    +

    A composite view might currently have a token stored in the view definition. In 1.9, this should be moved to plugins.composite-views.remote-source-credentials, as shown here

    diff --git a/snapshot/docs/releases/v1.9-release-notes.html b/snapshot/docs/releases/v1.9-release-notes.html index 551e3bc90e..3fafc3e378 100644 --- a/snapshot/docs/releases/v1.9-release-notes.html +++ b/snapshot/docs/releases/v1.9-release-notes.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
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    • -
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    • @@ -516,7 +514,7 @@

    More information

    Remote authentication

    Rather than storing an auth token in the composite view, it is now expected to specify an authentication method in the Delta configuration.

    -

    More information

    +

    More information

    Remove the resourceTag field in projections of composite views

    This field was never used, so as there is no plan for it, it has now been removed.

    Elasticsearch Views

    @@ -555,7 +553,7 @@

    Automatic media type configuration

    The automatic detection of the media type can now be customized at the Delta level.

    NB: The media type provided by the user still prevails over automatic detection.

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    More information

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    More information

    Tagging at creation/update

    Create and update operations on files accept now an optional tag allowing to tag the resulting file in the same call.

    More information

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    Nexus Storage

    Automatic file detection

    The Nexus storage app also benefits from the changes in automatic file detection.

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    More information

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    More information

    Removing Delta callback to validate the caller identity

    This callback has been replaced by a local validation of the token.

    diff --git a/snapshot/docs/releases/v1.9-to-v1.10-migration.html b/snapshot/docs/releases/v1.9-to-v1.10-migration.html index 2f76569a08..113206fbcb 100644 --- a/snapshot/docs/releases/v1.9-to-v1.10-migration.html +++ b/snapshot/docs/releases/v1.9-to-v1.10-migration.html @@ -146,15 +146,15 @@
  • Understanding Knowledge Graphs
  • Try Nexus with Neuroscience Datasets
  • Try Nexus with the MovieLens Dataset
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  • Running Nexus -
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  • Running Nexus +
  • Releases
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  • Roadmap
  • Nexus Fusion
    • diff --git a/snapshot/docs/roadmap.html b/snapshot/docs/roadmap.html deleted file mode 100644 index b1e10c1282..0000000000 --- a/snapshot/docs/roadmap.html +++ /dev/null @@ -1,354 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - -Roadmap · Blue Brain Nexus - - - - - - - - - - - - - - - - - -
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    Snapshot version
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    -You are browsing the docs for the snapshot version of Nexus, -the latest release is available here -

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    Roadmap

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    Check our GitHub Milestones for the latest updates and priorities for Nexus.

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    Note that the content of milestones is subject to change without notice (for example depending on sprint completion). We favor frequent releases, so we might remove some items of the milestone instead of extending the due date.

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    Our current release schedule is one milestone every two weeks approximately, resulting in the next patch, minor or major release.

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    The schedule might vary depending on urgency of patch releases, feature complexity, and time of year (among other things).

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    Please reach out to us on our GitHub Discussions page if you have questions.

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    - - - - - - - - - diff --git a/snapshot/docs/getting-started/running-nexus/blazegraph.html b/snapshot/docs/running-nexus/blazegraph.html similarity index 55% rename from snapshot/docs/getting-started/running-nexus/blazegraph.html rename to snapshot/docs/running-nexus/blazegraph.html index 49d6fc3ac3..96ea56a198 100644 --- a/snapshot/docs/getting-started/running-nexus/blazegraph.html +++ b/snapshot/docs/running-nexus/blazegraph.html @@ -19,23 +19,23 @@ - + Blazegraph · Blue Brain Nexus - - + + - - - + + + - - - - + + + +
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    and composite views and the RAM guidance from Blazegraph gives some insights on how much memory can be assigned.

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    Using the supervision endpoints for Blazegraph and composite views and the RAM guidance from Blazegraph gives some insights on how much memory can be assigned.

    Storage:

    Blazegraph stores data in an append only journal which means updates will use additional disk space.

    So the disk usage will grow with time depending on the rhythm of updates.

    Compactions can be applied to the journal using the CompactJournalUtility to reduce the disk usage, but it takes quite a bit a time and requires taking the software offline during the process.

    An alternative can be to reindex on a fresh instance of Blazegraph, this approach also allows to reconfigure the underlying namespaces.

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    Using the supervision endpoints for Blazegraph and composite views and the Data on disk guidance from Blazegraph gives some insights on how much storage can be assigned.

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    Using the supervision endpoints for Blazegraph and composite views and the Data on disk guidance from Blazegraph gives some insights on how much storage can be assigned.

    Query and indexing performance:

    Query load and latency must be monitored to make sure that information in a timely manner to the client.

    On the write side, indexing load and latency must also be watched especially if the data must be available for search as soon as possible.

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    <

    To restore a backup, the journal file related to the instance needs to be replaced by the one generated by the backup operation.

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    <

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