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428 changes: 324 additions & 104 deletions
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src/Plugins/ITKImageProcessing/pipelines/(02) Image Segmentation.d3dpipeline
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src/Plugins/ITKImageProcessing/pipelines/(03) Porosity Mesh Export.d3dpipeline
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src/Plugins/ITKImageProcessing/pipelines/(04) Porosity Analysis.d3dpipeline
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src/Plugins/OrientationAnalysis/pipelines/AlignSectionsMutualInformation.d3dpipeline
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{ | ||
"isDisabled": false, | ||
"name": "AlignSectionsMutualInformation.d3dpipeline", | ||
"pinnedParams": [], | ||
"pipeline": [ | ||
{ | ||
"args": { | ||
"cell_attribute_matrix_name": "Cell Data", | ||
"cell_ensemble_attribute_matrix_name": "Cell Ensemble Data", | ||
"output_image_geometry_path": "DataContainer", | ||
"cell_attribute_matrix_name": { | ||
"value": "Cell Data", | ||
"version": 1 | ||
}, | ||
"cell_ensemble_attribute_matrix_name": { | ||
"value": "Cell Ensemble Data", | ||
"version": 1 | ||
}, | ||
"output_image_geometry_path": { | ||
"value": "DataContainer", | ||
"version": 1 | ||
}, | ||
"parameters_version": 1, | ||
"read_h5_ebsd_object": { | ||
"end_slice": 117, | ||
"euler_representation": 0, | ||
"hdf5_data_paths": [ | ||
"Confidence Index", | ||
"EulerAngles", | ||
"Fit", | ||
"Image Quality", | ||
"Phases", | ||
"SEM Signal", | ||
"X Position", | ||
"Y Position" | ||
], | ||
"input_file_path": "Data/Output/Reconstruction/Small_IN100.h5ebsd", | ||
"start_slice": 1, | ||
"use_recommended_transform": true | ||
"value": { | ||
"end_slice": 117, | ||
"euler_representation": 0, | ||
"hdf5_data_paths": [ | ||
"Confidence Index", | ||
"EulerAngles", | ||
"Fit", | ||
"Image Quality", | ||
"Phases", | ||
"SEM Signal", | ||
"X Position", | ||
"Y Position" | ||
], | ||
"input_file_path": "Data/Output/Reconstruction/Small_IN100.h5ebsd", | ||
"start_slice": 1, | ||
"use_recommended_transform": true | ||
}, | ||
"version": 1 | ||
} | ||
}, | ||
"comments": "", | ||
"filter": { | ||
"name": "simplnx::ReadH5EbsdFilter", | ||
"name": "nx::core::ReadH5EbsdFilter", | ||
"uuid": "db291b6c-9aaf-432d-9547-430c865a539c" | ||
}, | ||
"isDisabled": false | ||
}, | ||
{ | ||
"args": { | ||
"array_thresholds_object": { | ||
"inverted": false, | ||
"thresholds": [ | ||
{ | ||
"array_path": "DataContainer/Cell Data/Image Quality", | ||
"comparison": 0, | ||
"inverted": false, | ||
"type": "array", | ||
"union": 0, | ||
"value": 120.0 | ||
}, | ||
{ | ||
"array_path": "DataContainer/Cell Data/Confidence Index", | ||
"comparison": 0, | ||
"inverted": false, | ||
"type": "array", | ||
"union": 0, | ||
"value": 0.1 | ||
} | ||
], | ||
"type": "collection", | ||
"union": 0 | ||
}, | ||
"output_data_array_name": "Mask" | ||
"value": { | ||
"inverted": false, | ||
"thresholds": [ | ||
{ | ||
"array_path": "DataContainer/Cell Data/Image Quality", | ||
"comparison": 0, | ||
"inverted": false, | ||
"type": "array", | ||
"union": 0, | ||
"value": 120.0 | ||
}, | ||
{ | ||
"array_path": "DataContainer/Cell Data/Confidence Index", | ||
"comparison": 0, | ||
"inverted": false, | ||
"type": "array", | ||
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"value": 0.1 | ||
} | ||
], | ||
"type": "collection", | ||
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}, | ||
"version": 1 | ||
}, | ||
"created_mask_type": { | ||
"value": 10, | ||
"version": 1 | ||
}, | ||
"custom_false_value": { | ||
"value": 0.0, | ||
"version": 1 | ||
}, | ||
"custom_true_value": { | ||
"value": 1.0, | ||
"version": 1 | ||
}, | ||
"output_data_array_name": { | ||
"value": "Mask", | ||
"version": 1 | ||
}, | ||
"parameters_version": 1, | ||
"use_custom_false_value": { | ||
"value": false, | ||
"version": 1 | ||
}, | ||
"use_custom_true_value": { | ||
"value": false, | ||
"version": 1 | ||
} | ||
}, | ||
"comments": "", | ||
"filter": { | ||
"name": "simplnx::MultiThresholdObjects", | ||
"name": "nx::core::MultiThresholdObjectsFilter", | ||
"uuid": "4246245e-1011-4add-8436-0af6bed19228" | ||
}, | ||
"isDisabled": false | ||
}, | ||
{ | ||
"args": { | ||
"input_orientation_array_path": "DataContainer/Cell Data/EulerAngles", | ||
"input_representation_index": 0, | ||
"output_orientation_array_name": "Quats", | ||
"output_representation_index": 2 | ||
"input_orientation_array_path": { | ||
"value": "DataContainer/Cell Data/EulerAngles", | ||
"version": 1 | ||
}, | ||
"input_representation_index": { | ||
"value": 0, | ||
"version": 1 | ||
}, | ||
"output_orientation_array_name": { | ||
"value": "Quats", | ||
"version": 1 | ||
}, | ||
"output_representation_index": { | ||
"value": 2, | ||
"version": 1 | ||
}, | ||
"parameters_version": 1 | ||
}, | ||
"comments": "", | ||
"filter": { | ||
"name": "simplnx::ConvertOrientations", | ||
"name": "nx::core::ConvertOrientationsFilter", | ||
"uuid": "501e54e6-a66f-4eeb-ae37-00e649c00d4b" | ||
}, | ||
"isDisabled": false | ||
}, | ||
{ | ||
"args": { | ||
"alignment_shift_file_name": "Data/Output/OrientationAnalysis/Alignment_By_Mutual_Information_Shifts.txt", | ||
"cell_phases_array_path": "DataContainer/Cell Data/Phases", | ||
"crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", | ||
"mask_array_path": "DataContainer/Cell Data/Mask", | ||
"misorientation_tolerance": 5.0, | ||
"quats_array_path": "DataContainer/Cell Data/Quats", | ||
"input_image_geometry_path": "DataContainer", | ||
"use_mask": true, | ||
"write_alignment_shifts": true | ||
"alignment_shift_file_name": { | ||
"value": "Data/Output/OrientationAnalysis/Alignment_By_Mutual_Information_Shifts.txt", | ||
"version": 1 | ||
}, | ||
"cell_phases_array_path": { | ||
"value": "DataContainer/Cell Data/Phases", | ||
"version": 1 | ||
}, | ||
"crystal_structures_array_path": { | ||
"value": "DataContainer/Cell Ensemble Data/CrystalStructures", | ||
"version": 1 | ||
}, | ||
"input_image_geometry_path": { | ||
"value": "DataContainer", | ||
"version": 1 | ||
}, | ||
"mask_array_path": { | ||
"value": "DataContainer/Cell Data/Mask", | ||
"version": 1 | ||
}, | ||
"misorientation_tolerance": { | ||
"value": 5.0, | ||
"version": 1 | ||
}, | ||
"parameters_version": 1, | ||
"quats_array_path": { | ||
"value": "DataContainer/Cell Data/Quats", | ||
"version": 1 | ||
}, | ||
"use_mask": { | ||
"value": true, | ||
"version": 1 | ||
}, | ||
"write_alignment_shifts": { | ||
"value": true, | ||
"version": 1 | ||
} | ||
}, | ||
"comments": "", | ||
"filter": { | ||
"name": "simplnx::AlignSectionsMutualInformationFilter", | ||
"name": "nx::core::AlignSectionsMutualInformationFilter", | ||
"uuid": "3cf33ad9-8322-4d40-96de-14bbe40969cc" | ||
}, | ||
"isDisabled": false | ||
}, | ||
{ | ||
"args": { | ||
"export_file_path": "Data/Output/OrientationAnalysis/SmallIN100_AlignSectionsMutualInformation.dream3d", | ||
"write_xdmf_file": true | ||
"export_file_path": { | ||
"value": "Data/Output/OrientationAnalysis/SmallIN100_AlignSectionsMutualInformation.dream3d", | ||
"version": 1 | ||
}, | ||
"parameters_version": 1, | ||
"write_xdmf_file": { | ||
"value": true, | ||
"version": 1 | ||
} | ||
}, | ||
"comments": "", | ||
"filter": { | ||
"name": "simplnx::WriteDREAM3DFilter", | ||
"name": "nx::core::WriteDREAM3DFilter", | ||
"uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" | ||
}, | ||
"isDisabled": false | ||
} | ||
], | ||
"workflowParams": [] | ||
"version": 1 | ||
} |
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