diff --git a/src/Plugins/OrientationAnalysis/docs/ReadH5OinaDataFilter.md b/src/Plugins/OrientationAnalysis/docs/ReadH5OinaDataFilter.md index 3e01eb087c..84658caad7 100644 --- a/src/Plugins/OrientationAnalysis/docs/ReadH5OinaDataFilter.md +++ b/src/Plugins/OrientationAnalysis/docs/ReadH5OinaDataFilter.md @@ -70,8 +70,8 @@ All orientation data in the H5OINA file are in radians. | Kind | Default Name | Type | Comp Dims | Description | |-------------|--------------|------|-----------|----------------------------------------| | Data Container | ImageDataContainer | N/A | N/A | Created Data Container name with an **Image Geometry** | -| Attribute Matrix | CellData | Cell | N/A | Created **Cell Attribute Matrix** name | -| Attribute Matrix | CellEnsembleData | Cell Ensemble | N/A | Created **Cell Ensemble Attribute Matrix** name | +| Attribute Matrix | Cell Data | Cell | N/A | Created **Cell Attribute Matrix** name | +| Attribute Matrix | Cell Ensemble Data | Cell Ensemble | N/A | Created **Cell Ensemble Attribute Matrix** name | | Cell Attribute Array | Band Contrast | uint8 | (1) | | | Cell Attribute Array | Band Slope | uint8 | (1) | | | Cell Attribute Array | Bands | uint8 | (1) | | diff --git a/src/Plugins/OrientationAnalysis/pipelines/ComputeGBCD-GBPDMetricBased.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/ComputeGBCD-GBPDMetricBased.d3dpipeline index 5439766d60..90b0d67a2f 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/ComputeGBCD-GBPDMetricBased.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/ComputeGBCD-GBPDMetricBased.d3dpipeline @@ -8,7 +8,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -56,15 +56,15 @@ "TriangleDataContainer/SharedTriList", "TriangleDataContainer/SharedVertexList", "TriangleDataContainer/FaceData", - "TriangleDataContainer/VertexData", - "TriangleDataContainer/FaceData/FaceLabels", - "TriangleDataContainer/VertexData/NodeType", + "TriangleDataContainer/Vertex Data", + "TriangleDataContainer/Face Data/FaceLabels", + "TriangleDataContainer/Vertex Data/NodeType", "TriangleDataContainer/Edge List", - "TriangleDataContainer/FaceData/FaceAreas", - "TriangleDataContainer/FaceData/FaceNormals", - "TriangleDataContainer/FaceData/FaceDihedralAngles", - "TriangleDataContainer/FaceData/FaceIPFColors", - "TriangleDataContainer/FaceData/FaceMisorientationColors" + "TriangleDataContainer/Face Data/FaceAreas", + "TriangleDataContainer/Face Data/FaceNormals", + "TriangleDataContainer/Face Data/FaceDihedralAngles", + "TriangleDataContainer/Face Data/FaceIPFColors", + "TriangleDataContainer/Face Data/FaceMisorientationColors" ], "file_path": "Data/Output/SurfaceMesh/SmallIN100_MeshStats.dream3d" }, @@ -77,7 +77,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -125,9 +125,9 @@ "TriangleDataContainer/SharedTriList", "TriangleDataContainer/SharedVertexList", "TriangleDataContainer/FaceData", - "TriangleDataContainer/VertexData", - "TriangleDataContainer/FaceData/FaceLabels", - "TriangleDataContainer/VertexData/NodeType", + "TriangleDataContainer/Vertex Data", + "TriangleDataContainer/Face Data/FaceLabels", + "TriangleDataContainer/Vertex Data/NodeType", "TriangleDataContainer/Edge List" ], "file_path": "Data/Output/SurfaceMesh/SmallIN100_Smoothed.dream3d" @@ -141,7 +141,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -189,9 +189,9 @@ "TriangleDataContainer/SharedTriList", "TriangleDataContainer/SharedVertexList", "TriangleDataContainer/FaceData", - "TriangleDataContainer/VertexData", - "TriangleDataContainer/FaceData/FaceLabels", - "TriangleDataContainer/VertexData/NodeType" + "TriangleDataContainer/Vertex Data", + "TriangleDataContainer/Face Data/FaceLabels", + "TriangleDataContainer/Vertex Data/NodeType" ], "file_path": "Data/Output/SurfaceMesh/SmallIN100_Mesh.dream3d" }, @@ -204,7 +204,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -264,7 +264,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -315,7 +315,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -461,7 +461,7 @@ "alignment_shift_file_name": "Data/Output/Alignment_By_Feature_Centroid_Shifts.txt", "mask_array_path": "DataContainer/Cell Data/Mask", "reference_slice": 0, - "selected_cell_data_path": "DataContainer/CellData", + "selected_cell_data_path": "DataContainer/Cell Data", "input_image_geometry_path": "DataContainer", "use_reference_slice": true, "write_alignment_shifts": false @@ -661,7 +661,7 @@ { "args": { "apply_to_single_phase": false, - "cell_attribute_matrix_path": "DataContainer/CellData", + "cell_attribute_matrix_path": "DataContainer/Cell Data", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", "feature_phases_path": "Data Container/Feature Data/Phases", "ignored_voxel_arrays": [], @@ -1006,7 +1006,7 @@ "feature_avg_misorientations_array_name": "FeatureAvgMisorientations", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", "feature_reference_misorientations_array_name": "FeatureReferenceMisorientations", - "gb_euclidean_distances_array_path": "CellData/GBEuclideanDistances", + "gb_euclidean_distances_array_path": "Cell Data/GBEuclideanDistances", "quats_array_path": "DataContainer/Cell Data/Quats", "reference_orientation_index": 0 }, @@ -1101,7 +1101,7 @@ }, { "args": { - "face_data_group_name": "FaceData", + "face_data_group_name": "Face Data", "face_feature_attribute_matrix_name": "Face Feature Data", "face_labels_array_name": "FaceLabels", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", @@ -1111,7 +1111,7 @@ "node_types_array_name": "NodeType", "input_data_array_paths": [], "output_triangle_geometry_path": "TriangleDataContainer", - "vertex_data_group_name": "VertexData" + "vertex_data_group_name": "Vertex Data" }, "comments": "", "filter": { @@ -1148,7 +1148,7 @@ "lambda_value": 0.25, "mu_factor": 0.20000000298023224, "quad_point_lambda": 0.15000000596046448, - "surface_mesh_node_type_array_path": "TriangleDataContainer/VertexData/NodeType", + "surface_mesh_node_type_array_path": "TriangleDataContainer/Vertex Data/NodeType", "surface_point_lambda": 0.0, "surface_quad_point_lambda": 0.0, "surface_triple_line_lambda": 0.0, @@ -1227,8 +1227,8 @@ "feature_euler_angles_array_path": "DataContainer/Cell Feature Data/AvgEulerAngles", "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", "surface_mesh_face_ipf_colors_array_name": "FaceIPFColors", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "surface_mesh_face_normals_array_path": "TriangleDataContainer/FaceData/FaceNormals" + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_normals_array_path": "TriangleDataContainer/Face Data/FaceNormals" }, "comments": "", "filter": { @@ -1242,7 +1242,7 @@ "avg_quats_array_path": "DataContainer/Cell Feature Data/AvgQuats", "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", "surface_mesh_face_misorientation_colors_array_name": "FaceMisorientationColors" }, "comments": "", @@ -1276,11 +1276,11 @@ }, { "args": { - "face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", + "face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", "feature_face_ids_array_name": "FeatureFaceId", "feature_face_labels_array_name": "FaceLabels", "feature_num_triangles_array_name": "NumTriangles", - "grain_boundary_attribute_matrix_name": "FaceFeatureData", + "grain_boundary_attribute_matrix_name": "Face Feature Data", "input_triangle_geometry_path": "TriangleDataContainer" }, "comments": "", @@ -1305,14 +1305,14 @@ 1.0, 17.899999618530273 ], - "node_types_array_path": "TriangleDataContainer/VertexData/NodeType", + "node_types_array_path": "TriangleDataContainer/Vertex Data/NodeType", "num_sampl_pts": 3000, "phase_of_interest": 1, "save_relative_err": true, - "surface_mesh_face_areas_array_path": "TriangleDataContainer/FaceData/FaceAreas", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "surface_mesh_face_normals_array_path": "TriangleDataContainer/FaceData/FaceNormals", - "surface_mesh_feature_face_labels_array_path": "TriangleDataContainer/FaceFeatureData/FaceLabels", + "surface_mesh_face_areas_array_path": "TriangleDataContainer/Face Data/FaceAreas", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_normals_array_path": "TriangleDataContainer/Face Data/FaceNormals", + "surface_mesh_feature_face_labels_array_path": "TriangleDataContainer/Face Feature Data/FaceLabels", "input_triangle_geometry_path": "TriangleDataContainer" }, "comments": "", @@ -1331,14 +1331,14 @@ "feature_euler_angles_array_path": "DataContainer/Cell Feature Data/AxisEulerAngles", "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", "limit_dist": 7.0, - "node_types_array_path": "TriangleDataContainer/VertexData/NodeType", + "node_types_array_path": "TriangleDataContainer/Vertex Data/NodeType", "num_sampl_pts": 3000, "phase_of_interest": 1, "save_relative_err": false, - "surface_mesh_face_areas_array_path": "TriangleDataContainer/FaceData/FaceAreas", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "surface_mesh_face_normals_array_path": "TriangleDataContainer/FaceData/FaceNormals", - "surface_mesh_feature_face_labels_array_path": "TriangleDataContainer/FaceFeatureData/FaceLabels", + "surface_mesh_face_areas_array_path": "TriangleDataContainer/Face Data/FaceAreas", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_normals_array_path": "TriangleDataContainer/Face Data/FaceNormals", + "surface_mesh_feature_face_labels_array_path": "TriangleDataContainer/Face Feature Data/FaceLabels", "input_triangle_geometry_path": "TriangleDataContainer" }, "comments": "", diff --git a/src/Plugins/OrientationAnalysis/pipelines/EBSD Reconstruction/(08) Small IN100 Full Reconstruction.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/EBSD Reconstruction/(08) Small IN100 Full Reconstruction.d3dpipeline index fddfd18680..b91757cf85 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/EBSD Reconstruction/(08) Small IN100 Full Reconstruction.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/EBSD Reconstruction/(08) Small IN100 Full Reconstruction.d3dpipeline @@ -124,7 +124,7 @@ "input_image_geometry_path": "DataContainer", "mask_array_path": "DataContainer/Cell Data/Mask", "reference_slice": 0, - "selected_cell_data_path": "DataContainer/CellData", + "selected_cell_data_path": "DataContainer/Cell Data", "use_reference_slice": true, "write_alignment_shifts": false }, @@ -339,7 +339,7 @@ { "args": { "apply_to_single_phase": false, - "cell_attribute_matrix_path": "DataContainer/CellData", + "cell_attribute_matrix_path": "DataContainer/Cell Data", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", "feature_phases_path": "Data Container/Feature Data/Phases", "ignored_voxel_arrays": [], diff --git a/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(01) Small IN100 Morphological Statistics.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(01) Small IN100 Morphological Statistics.d3dpipeline index 96262f8fea..030cbc4ae2 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(01) Small IN100 Morphological Statistics.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(01) Small IN100 Morphological Statistics.d3dpipeline @@ -11,7 +11,7 @@ "DataContainer/Cell Ensemble Data/CrystalStructures", "DataContainer/Cell Ensemble Data/LatticeConstants", "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/EulerAngles", "DataContainer/Cell Data/Fit", @@ -26,7 +26,6 @@ "DataContainer/Cell Feature Data/Phases", "DataContainer/Cell Feature Data/AvgQuats", "DataContainer/Cell Feature Data/AvgEulerAngles", - "DataContainer/NewGrain Data", "DataContainer/Cell Data/ParentIds", "DataContainer/Cell Feature Data/ParentIds", diff --git a/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(05) Small IN100 Crystallographic Statistics.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(05) Small IN100 Crystallographic Statistics.d3dpipeline index a2fa9fb401..d6cd341019 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(05) Small IN100 Crystallographic Statistics.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/EBSD Statistics/(05) Small IN100 Crystallographic Statistics.d3dpipeline @@ -8,7 +8,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -24,7 +24,6 @@ "DataContainer/Cell Feature Data/Active", "DataContainer/Cell Data/FeatureIds", "DataContainer/Cell Feature Data/Phases", - "DataContainer/NewGrain Data", "DataContainer/Cell Data/ParentIds", "DataContainer/Cell Feature Data/ParentIds", @@ -59,7 +58,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -205,7 +204,7 @@ "alignment_shift_file_name": "Data/Output/Alignment_By_Feature_Centroid_Shifts.txt", "mask_array_path": "DataContainer/Cell Data/Mask", "reference_slice": 0, - "selected_cell_data_path": "DataContainer/CellData", + "selected_cell_data_path": "DataContainer/Cell Data", "input_image_geometry_path": "DataContainer", "use_reference_slice": true, "write_alignment_shifts": false @@ -405,7 +404,7 @@ { "args": { "apply_to_single_phase": false, - "cell_attribute_matrix_path": "DataContainer/CellData", + "cell_attribute_matrix_path": "DataContainer/Cell Data", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", "feature_phases_path": "Data Container/Feature Data/Phases", "ignored_voxel_arrays": [], @@ -661,17 +660,6 @@ }, "isDisabled": false }, - { - "args": { - "removed_data_path": [] - }, - "comments": "", - "filter": { - "name": "simplnx::DeleteDataFilter", - "uuid": "bf286740-e987-49fe-a7c8-6e566e3a0606" - }, - "isDisabled": true - }, { "args": { "avg_euler_angles_array_name": "AvgEulerAngles", @@ -750,7 +738,7 @@ "feature_avg_misorientations_array_name": "FeatureAvgMisorientations", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", "feature_reference_misorientations_array_name": "FeatureReferenceMisorientations", - "gb_euclidean_distances_array_path": "CellData/GBEuclideanDistances", + "gb_euclidean_distances_array_path": "Cell Data/GBEuclideanDistances", "quats_array_path": "DataContainer/Cell Data/Quats", "reference_orientation_index": 0 }, diff --git a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(01) Small IN100 Quick Mesh.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(01) Small IN100 Quick Mesh.d3dpipeline index 2d9da3e56f..15724bd4c9 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(01) Small IN100 Quick Mesh.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(01) Small IN100 Quick Mesh.d3dpipeline @@ -11,7 +11,7 @@ "DataContainer/Cell Ensemble Data/CrystalStructures", "DataContainer/Cell Ensemble Data/LatticeConstants", "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/EulerAngles", "DataContainer/Cell Data/Fit", @@ -24,7 +24,6 @@ "DataContainer/Cell Feature Data/Active", "DataContainer/Cell Data/FeatureIds", "DataContainer/Cell Feature Data/Phases", - "DataContainer/NewGrain Data", "DataContainer/Cell Data/ParentIds", "DataContainer/Cell Feature Data/ParentIds", @@ -113,8 +112,8 @@ }, { "args": { - "face_data_group_name": "FaceData", - "face_feature_attribute_matrix_name": "Face Feature Data", + "face_data_group_name": "Face Data", + "face_feature_attribute_matrix_name": "QM Face Feature Data", "face_labels_array_name": "FaceLabels", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", "fix_problem_voxels": false, @@ -123,7 +122,7 @@ "node_types_array_name": "NodeType", "input_data_array_paths": [], "output_triangle_geometry_path": "TriangleDataContainer", - "vertex_data_group_name": "VertexData" + "vertex_data_group_name": "Vertex Data" }, "comments": "", "filter": { diff --git a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(02) Small IN100 Smooth Mesh.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(02) Small IN100 Smooth Mesh.d3dpipeline index a4ed4b1651..40a8a215fd 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(02) Small IN100 Smooth Mesh.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(02) Small IN100 Smooth Mesh.d3dpipeline @@ -8,13 +8,13 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", + "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", - "DataContainer/Cell Data/EulerAngles", + "DataContainer/Cell Data/SEM Signal", "DataContainer/Cell Data/Fit", - "DataContainer/Cell Data/Image Quality", + "DataContainer/Cell Data/EulerAngles", "DataContainer/Cell Data/Phases", - "DataContainer/Cell Data/SEM Signal", "DataContainer/Cell Data/Mask", "DataContainer/Cell Data/Quats", "DataContainer/Cell Data/FeatureIds", @@ -26,39 +26,39 @@ "DataContainer/Cell Data/FeatureReferenceMisorientations", "DataContainer/Cell Data/KernelAverageMisorientations", "DataContainer/Cell Feature Data", + "DataContainer/Cell Ensemble Data", + "DataContainer/Cell Ensemble Data/CrystalStructures", + "DataContainer/Cell Ensemble Data/LatticeConstants", + "DataContainer/NewGrain Data", + "DataContainer/NewGrain Data/Active", "DataContainer/Cell Feature Data/Active", - "DataContainer/Cell Feature Data/Phases", - - "DataContainer/Cell Feature Data/ParentIds", + "DataContainer/Cell Feature Data/AspectRatios", + "DataContainer/Cell Feature Data/AvgEulerAngles", + "DataContainer/Cell Feature Data/AvgQuats", + "DataContainer/Cell Feature Data/AxisEulerAngles", + "DataContainer/Cell Feature Data/AxisLengths", "DataContainer/Cell Feature Data/Centroids", "DataContainer/Cell Feature Data/EquivalentDiameters", + "DataContainer/Cell Feature Data/FeatureAvgMisorientations", + "DataContainer/Cell Feature Data/Neighborhoods", "DataContainer/Cell Feature Data/NumElements", - "DataContainer/Cell Feature Data/Omega3s", - "DataContainer/Cell Feature Data/AxisLengths", - "DataContainer/Cell Feature Data/AxisEulerAngles", - "DataContainer/Cell Feature Data/AspectRatios", - "DataContainer/Cell Feature Data/Shape Volumes", "DataContainer/Cell Feature Data/NumNeighbors", - "DataContainer/Cell Feature Data/Neighborhoods", - "DataContainer/Cell Feature Data/SurfaceAreaVolumeRatio", - "DataContainer/Cell Feature Data/AvgQuats", - "DataContainer/Cell Feature Data/AvgEulerAngles", + "DataContainer/Cell Feature Data/Omega3s", + "DataContainer/Cell Feature Data/ParentIds", + "DataContainer/Cell Feature Data/Phases", + "DataContainer/Cell Feature Data/Poles", "DataContainer/Cell Feature Data/Schmids", + "DataContainer/Cell Feature Data/Shape Volumes", "DataContainer/Cell Feature Data/SlipSystems", - "DataContainer/Cell Feature Data/Poles", - "DataContainer/Cell Feature Data/FeatureAvgMisorientations", - "DataContainer/Cell Ensemble Data", - "DataContainer/Cell Ensemble Data/CrystalStructures", - "DataContainer/Cell Ensemble Data/LatticeConstants", - "DataContainer/NewGrain Data", - "DataContainer/NewGrain Data/Active", + "DataContainer/Cell Feature Data/SurfaceAreaVolumeRatio", "TriangleDataContainer", "TriangleDataContainer/SharedTriList", "TriangleDataContainer/SharedVertexList", - "TriangleDataContainer/FaceData", - "TriangleDataContainer/VertexData", - "TriangleDataContainer/FaceData/FaceLabels", - "TriangleDataContainer/VertexData/NodeType" + "TriangleDataContainer/Face Data", + "TriangleDataContainer/Vertex Data", + "TriangleDataContainer/Vertex Data/NodeType", + "TriangleDataContainer/Face Data/FaceLabels", + "TriangleDataContainer/QM Face Feature Data" ], "file_path": "Data/Output/SurfaceMesh/SmallIN100_Mesh.dream3d" }, @@ -80,7 +80,7 @@ "lambda_value": 0.25, "mu_factor": 0.20000000298023224, "quad_point_lambda": 0.15000000596046448, - "surface_mesh_node_type_array_path": "TriangleDataContainer/VertexData/NodeType", + "surface_mesh_node_type_array_path": "TriangleDataContainer/Vertex Data/NodeType", "surface_point_lambda": 0.0, "surface_quad_point_lambda": 0.0, "surface_triple_line_lambda": 0.0, diff --git a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(03) Small IN100 Mesh Statistics.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(03) Small IN100 Mesh Statistics.d3dpipeline index d5f5e6a0af..4feecf0aaf 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(03) Small IN100 Mesh Statistics.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(03) Small IN100 Mesh Statistics.d3dpipeline @@ -1,14 +1,1103 @@ { "isDisabled": false, - "name": "(03) Small IN100 Mesh Statistics.d3dpipeline", - "pinnedParams": [], + "name": "Untitled Pipeline", "pipeline": [ { "args": { + "Imported Pipeline": { + "isDisabled": false, + "name": "(02) Small IN100 Smooth Mesh", + "pipeline": [ + { + "args": { + "Imported Pipeline": { + "isDisabled": false, + "name": "(01) Small IN100 Quick Mesh", + "pipeline": [ + { + "args": { + "Imported Pipeline": { + "isDisabled": false, + "name": "(05) Small IN100 Crystallographic Statistics", + "pipeline": [ + { + "args": { + "Imported Pipeline": { + "isDisabled": false, + "name": "(01) Small IN100 Morphological Statistics", + "pipeline": [ + { + "args": { + "Imported Pipeline": { + "isDisabled": false, + "name": "(08) Small IN100 Full Reconstruction", + "pipeline": [ + { + "args": { + "cell_attribute_matrix_name": "Cell Data", + "cell_ensemble_attribute_matrix_name": "Cell Ensemble Data", + "output_image_geometry_path": "DataContainer", + "read_h5_ebsd_object": { + "end_slice": 117, + "euler_representation": 0, + "hdf5_data_paths": [ + "Confidence Index", + "EulerAngles", + "Fit", + "Image 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"filter": { + "name": "nx::core::WriteDREAM3DFilter", + "uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" + }, + "isDisabled": false + } + ], + "version": 1 + }, "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -43,7 +1132,6 @@ "DataContainer/Cell Feature Data/Neighborhoods", "DataContainer/Cell Feature Data/NumElements", "DataContainer/Cell Feature Data/NumNeighbors", - "DataContainer/Cell Feature Data/Omega3s", "DataContainer/Cell Feature Data/ParentIds", "DataContainer/Cell Feature Data/Phases", @@ -55,59 +1143,55 @@ "TriangleDataContainer", "TriangleDataContainer/SharedTriList", "TriangleDataContainer/SharedVertexList", - "TriangleDataContainer/FaceData", - "TriangleDataContainer/VertexData", - "TriangleDataContainer/FaceData/FaceLabels", - "TriangleDataContainer/VertexData/NodeType", + "TriangleDataContainer/Face Data", + "TriangleDataContainer/Vertex Data", + "TriangleDataContainer/Vertex Data/NodeType", + "TriangleDataContainer/Face Data/FaceLabels", + "TriangleDataContainer/QM Face Feature Data", "TriangleDataContainer/Edge List" ], "file_path": "Data/Output/SurfaceMesh/SmallIN100_Smoothed.dream3d" - }, - "Imported Pipeline": { - "isDisabled": false, - "name": "Untitled Pipeline", - "pipeline": [] } }, "comments": "", "filter": { - "name": "simplnx::ReadDREAM3DFilter", + "name": "nx::core::ReadDREAM3DFilter", "uuid": "0dbd31c7-19e0-4077-83ef-f4a6459a0e2d" }, "isDisabled": false }, { "args": { - "triangle_areas_array_name": "FaceAreas", - "input_triangle_geometry_path": "TriangleDataContainer" + "input_triangle_geometry_path": "TriangleDataContainer", + "triangle_areas_array_name": "FaceAreas" }, "comments": "", "filter": { - "name": "simplnx::ComputeTriangleAreasFilter", + "name": "nx::core::ComputeTriangleAreasFilter", "uuid": "b149addd-c0c8-4010-a264-596005eaf2a5" }, "isDisabled": false }, { "args": { - "output_normals_array_name": "FaceNormals", - "input_triangle_geometry_path": "TriangleDataContainer" + "input_triangle_geometry_path": "TriangleDataContainer", + "output_normals_array_name": "FaceNormals" }, "comments": "", "filter": { - "name": "simplnx::TriangleNormalFilter", + "name": "nx::core::TriangleNormalFilter", "uuid": "8133d419-1919-4dbf-a5bf-1c97282ba63f" }, "isDisabled": false }, { "args": { - "surface_mesh_triangle_dihedral_angles_array_name": "FaceDihedralAngles", - "input_triangle_geometry_path": "TriangleDataContainer" + "input_triangle_geometry_path": "TriangleDataContainer", + "surface_mesh_triangle_dihedral_angles_array_name": "FaceDihedralAngles" }, "comments": "", "filter": { - "name": "simplnx::TriangleDihedralAngleFilter", + "name": "nx::core::TriangleDihedralAngleFilter", "uuid": "dd42c521-4ae5-485d-ad35-d1276547d2f1" }, "isDisabled": false @@ -118,12 +1202,12 @@ "feature_euler_angles_array_path": "DataContainer/Cell Feature Data/AvgEulerAngles", "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", "surface_mesh_face_ipf_colors_array_name": "FaceIPFColors", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "surface_mesh_face_normals_array_path": "TriangleDataContainer/FaceData/FaceNormals" + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_normals_array_path": "TriangleDataContainer/Face Data/FaceNormals" }, "comments": "", "filter": { - "name": "simplnx::ComputeFaceIPFColoringFilter", + "name": "nx::core::ComputeFaceIPFColoringFilter", "uuid": "30759600-7c02-4650-b5ca-e7036d6b568e" }, "isDisabled": false @@ -133,33 +1217,16 @@ "avg_quats_array_path": "DataContainer/Cell Feature Data/AvgQuats", "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", "surface_mesh_face_misorientation_colors_array_name": "FaceMisorientationColors" }, "comments": "", "filter": { - "name": "simplnx::GenerateFaceMisorientationColoringFilter", + "name": "nx::core::ComputeFeatureFaceMisorientationFilter", "uuid": "f3473af9-db77-43db-bd25-60df7230ea73" }, "isDisabled": false }, - { - "args": { - "face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "feature_face_ids_array_name": "SharedFeatureFaceId", - "feature_face_labels_array_name": "FaceLabels", - "feature_num_triangles_array_name": "NumTriangles", - "grain_boundary_attribute_matrix_name": "SharedFeatureFace", - "randomize_features": false, - "input_triangle_geometry_path": "TriangleDataContainer" - }, - "comments": "", - "filter": { - "name": "simplnx::SharedFeatureFaceFilter", - "uuid": 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"export_file_path": "Data/Output/SurfaceMesh/SmallIN100_Smoothed.dream3d", + "write_xdmf_file": true + }, + "comments": "", + "filter": { + "name": "nx::core::WriteDREAM3DFilter", + "uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" + }, + "isDisabled": false + } + ], + "version": 1 + }, + "import_data_object": { + "data_paths": [ + "DataContainer", + "DataContainer/Cell Data", + "DataContainer/Cell Data/Image Quality", + "DataContainer/Cell Data/Confidence Index", + "DataContainer/Cell Data/SEM Signal", + "DataContainer/Cell Data/Fit", + "DataContainer/Cell Data/EulerAngles", + "DataContainer/Cell Data/Phases", + "DataContainer/Cell Data/Mask", + "DataContainer/Cell Data/Quats", + "DataContainer/Cell Data/FeatureIds", + "DataContainer/Cell Data/ParentIds", + "DataContainer/Cell Data/IPFColors", + "DataContainer/Cell Data/GBManhattanDistances", + "DataContainer/Cell Data/TJManhattanDistances", + "DataContainer/Cell Data/QPManhattanDistances", + "DataContainer/Cell 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Data/Omega3s", + "DataContainer/Cell Feature Data/ParentIds", + "DataContainer/Cell Feature Data/Phases", + "DataContainer/Cell Feature Data/Poles", + "DataContainer/Cell Feature Data/Schmids", + "DataContainer/Cell Feature Data/Shape Volumes", + "DataContainer/Cell Feature Data/SlipSystems", + "DataContainer/Cell Feature Data/SurfaceAreaVolumeRatio", + "TriangleDataContainer", + "TriangleDataContainer/SharedTriList", + "TriangleDataContainer/SharedVertexList", + "TriangleDataContainer/Face Data", + "TriangleDataContainer/Vertex Data", + "TriangleDataContainer/Vertex Data/NodeType", + "TriangleDataContainer/Face Data/FaceLabels", + "TriangleDataContainer/QM Face Feature Data", + "TriangleDataContainer/Edge List" + ], + "file_path": "Data/Output/SurfaceMesh/SmallIN100_Smoothed.dream3d" + } + }, + "comments": "", + "filter": { + "name": "nx::core::ReadDREAM3DFilter", + "uuid": "0dbd31c7-19e0-4077-83ef-f4a6459a0e2d" + }, + "isDisabled": false + }, + { + "args": { + "input_triangle_geometry_path": "TriangleDataContainer", + "triangle_areas_array_name": "FaceAreas" + }, + "comments": "", + "filter": { + "name": "nx::core::ComputeTriangleAreasFilter", + "uuid": "b149addd-c0c8-4010-a264-596005eaf2a5" + }, + "isDisabled": false + }, + { + "args": { + "input_triangle_geometry_path": "TriangleDataContainer", + "output_normals_array_name": "FaceNormals" + }, + "comments": "", + "filter": { + "name": "nx::core::TriangleNormalFilter", + "uuid": "8133d419-1919-4dbf-a5bf-1c97282ba63f" + }, + "isDisabled": false + }, + { + "args": { + "input_triangle_geometry_path": "TriangleDataContainer", + "surface_mesh_triangle_dihedral_angles_array_name": "FaceDihedralAngles" + }, + "comments": "", + "filter": { + "name": "nx::core::TriangleDihedralAngleFilter", + "uuid": "dd42c521-4ae5-485d-ad35-d1276547d2f1" + }, + "isDisabled": false + }, + { + "args": { + "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", + "feature_euler_angles_array_path": "DataContainer/Cell Feature Data/AvgEulerAngles", + "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", + "surface_mesh_face_ipf_colors_array_name": "FaceIPFColors", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_normals_array_path": "TriangleDataContainer/Face Data/FaceNormals" + }, + "comments": "", + "filter": { + "name": "nx::core::ComputeFaceIPFColoringFilter", + "uuid": "30759600-7c02-4650-b5ca-e7036d6b568e" + }, + "isDisabled": false + }, + { + "args": { + "avg_quats_array_path": "DataContainer/Cell Feature Data/AvgQuats", + "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", + "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_misorientation_colors_array_name": "FaceMisorientationColors" + }, + "comments": "", + "filter": { + "name": "nx::core::ComputeFeatureFaceMisorientationFilter", + "uuid": "f3473af9-db77-43db-bd25-60df7230ea73" + }, + "isDisabled": false + }, + { + "args": { + "face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "feature_face_ids_array_name": "SharedFeatureFaceId", + "feature_face_labels_array_name": "FaceLabels", + "feature_num_triangles_array_name": "NumTriangles", + "grain_boundary_attribute_matrix_name": "SharedFeatureFace", + "input_triangle_geometry_path": "TriangleDataContainer", + "randomize_features": false + }, + "comments": "", + "filter": { + "name": "nx::core::SharedFeatureFaceFilter", + "uuid": "aaf7a258-fc92-48d7-9d06-ba317a3769e8" + }, + "isDisabled": false + }, + { + "args": { + "export_file_path": "Data/Output/SurfaceMesh/SmallIN100_MeshStats.dream3d", + "write_xdmf_file": true + }, + "comments": "", + "filter": { + "name": "nx::core::WriteDREAM3DFilter", + "uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" + }, + "isDisabled": false + } + ], + "version": 1 + }, "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", + "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", - "DataContainer/Cell Data/EulerAngles", + "DataContainer/Cell Data/SEM Signal", "DataContainer/Cell Data/Fit", - "DataContainer/Cell Data/Image Quality", + "DataContainer/Cell Data/EulerAngles", "DataContainer/Cell Data/Phases", - "DataContainer/Cell Data/SEM Signal", "DataContainer/Cell Data/Mask", "DataContainer/Cell Data/Quats", "DataContainer/Cell Data/FeatureIds", @@ -43,7 +1303,6 @@ "DataContainer/Cell Feature Data/Neighborhoods", "DataContainer/Cell Feature Data/NumElements", "DataContainer/Cell Feature Data/NumNeighbors", - "DataContainer/Cell Feature Data/Omega3s", "DataContainer/Cell Feature Data/ParentIds", "DataContainer/Cell Feature Data/Phases", @@ -55,26 +1314,24 @@ "TriangleDataContainer", "TriangleDataContainer/SharedTriList", "TriangleDataContainer/SharedVertexList", - "TriangleDataContainer/FaceData", - "TriangleDataContainer/VertexData", - "TriangleDataContainer/FaceData/FaceLabels", - "TriangleDataContainer/VertexData/NodeType", + "TriangleDataContainer/Face Data", + "TriangleDataContainer/Vertex Data", + "TriangleDataContainer/Vertex Data/NodeType", + "TriangleDataContainer/Face Data/FaceLabels", + "TriangleDataContainer/QM Face Feature Data", "TriangleDataContainer/Edge List", - "TriangleDataContainer/FaceData/FaceAreas", - "TriangleDataContainer/FaceData/FaceNormals", - "TriangleDataContainer/FaceData/FaceDihedralAngles" + "TriangleDataContainer/Face Data/FaceAreas", + "TriangleDataContainer/Face Data/FaceNormals", + "TriangleDataContainer/Face Data/FaceDihedralAngles", + "TriangleDataContainer/Face Data/FaceIPFColors", + "TriangleDataContainer/Face Data/FaceMisorientationColors" ], "file_path": "Data/Output/SurfaceMesh/SmallIN100_MeshStats.dream3d" - }, - "Imported Pipeline": { - "isDisabled": false, - "name": "Untitled Pipeline", - "pipeline": [] } }, "comments": "", "filter": { - "name": "simplnx::ReadDREAM3DFilter", + "name": "nx::core::ReadDREAM3DFilter", "uuid": "0dbd31c7-19e0-4077-83ef-f4a6459a0e2d" }, "isDisabled": false @@ -82,19 +1339,19 @@ { "args": { "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", - "face_ensemble_attribute_matrix_name": "FaceEnsembleData", + "face_ensemble_attribute_matrix_name": "Face Ensemble Data", "feature_euler_angles_array_path": "DataContainer/Cell Feature Data/AvgEulerAngles", "feature_phases_array_path": "DataContainer/Cell Feature Data/Phases", "gbcd_array_name": "GBCD", "gbcd_resolution": 9.0, - "surface_mesh_face_areas_array_path": "TriangleDataContainer/FaceData/FaceAreas", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "surface_mesh_face_normals_array_path": "TriangleDataContainer/FaceData/FaceNormals", - "input_triangle_geometry_path": "TriangleDataContainer" + "input_triangle_geometry_path": "TriangleDataContainer", + "surface_mesh_face_areas_array_path": "TriangleDataContainer/Face Data/FaceAreas", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_normals_array_path": "TriangleDataContainer/Face Data/FaceNormals" }, "comments": "", "filter": { - "name": "simplnx::ComputeGBCDFilter", + "name": "nx::core::ComputeGBCDFilter", "uuid": "0cc592b7-a3d3-4c6a-8894-1533670a31b9" }, "isDisabled": false @@ -104,8 +1361,7 @@ "cell_attribute_matrix_name": "Cell Data", "cell_intensity_array_name": "MRD", "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", - "gbcd_array_path": "TriangleDataContainer/FaceEnsembleData/GBCD", - "output_image_geometry_path": "GBCD Pole Figure [Sigma 3]", + "gbcd_array_path": "TriangleDataContainer/Face Ensemble Data/GBCD", "misorientation_rotation": [ 60.0, 1.0, @@ -113,11 +1369,12 @@ 1.0 ], "output_image_dimension": 100, + "output_image_geometry_path": "GBCD Pole Figure [Sigma 3]", "phase_of_interest": 1 }, "comments": "", "filter": { - "name": "simplnx::ComputeGBCDPoleFigureFilter", + "name": "nx::core::ComputeGBCDPoleFigureFilter", "uuid": "eed5183e-5a9c-485b-9e64-579a81f0d301" }, "isDisabled": false @@ -127,8 +1384,7 @@ "cell_attribute_matrix_name": "Cell Data", "cell_intensity_array_name": "MRD", "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", - "gbcd_array_path": "TriangleDataContainer/FaceEnsembleData/GBCD", - "output_image_geometry_path": "GBCD Pole Figure [Sigma 9]", + "gbcd_array_path": "TriangleDataContainer/Face Ensemble Data/GBCD", "misorientation_rotation": [ 39.0, 1.0, @@ -136,11 +1392,12 @@ 0.0 ], "output_image_dimension": 100, + "output_image_geometry_path": "GBCD Pole Figure [Sigma 9]", "phase_of_interest": 1 }, "comments": "", "filter": { - "name": "simplnx::ComputeGBCDPoleFigureFilter", + "name": "nx::core::ComputeGBCDPoleFigureFilter", "uuid": "eed5183e-5a9c-485b-9e64-579a81f0d301" }, "isDisabled": false @@ -150,8 +1407,7 @@ "cell_attribute_matrix_name": "Cell Data", "cell_intensity_array_name": "MRD", "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", - "gbcd_array_path": "TriangleDataContainer/FaceEnsembleData/GBCD", - "output_image_geometry_path": "GBCD Pole Figure [Sigma 11]", + "gbcd_array_path": "TriangleDataContainer/Face Ensemble Data/GBCD", "misorientation_rotation": [ 50.5, 1.0, @@ -159,11 +1415,12 @@ 0.0 ], "output_image_dimension": 100, + "output_image_geometry_path": "GBCD Pole Figure [Sigma 11]", "phase_of_interest": 1 }, "comments": "", "filter": { - "name": "simplnx::ComputeGBCDPoleFigureFilter", + "name": "nx::core::ComputeGBCDPoleFigureFilter", "uuid": "eed5183e-5a9c-485b-9e64-579a81f0d301" }, "isDisabled": false @@ -171,7 +1428,7 @@ { "args": { "crystal_structures_array_path": "DataContainer/Cell Ensemble Data/CrystalStructures", - "gbcd_array_path": "TriangleDataContainer/FaceEnsembleData/GBCD", + "gbcd_array_path": "TriangleDataContainer/Face Ensemble Data/GBCD", "misorientation_rotation": [ 60.0, 1.0, @@ -183,7 +1440,7 @@ }, "comments": "", "filter": { - "name": "simplnx::WriteGBCDGMTFileFilter", + "name": "nx::core::WriteGBCDGMTFileFilter", "uuid": "31710abf-b8a6-423f-a03f-4b8885bd3633" }, "isDisabled": false @@ -192,13 +1449,13 @@ "args": { "feature_euler_angles_array_path": "DataContainer/Cell Feature Data/AvgEulerAngles", "output_file": "Data/Output/SmallIN100GBCD/SmallIn100Triangles.ph", - "surface_mesh_face_areas_array_path": "TriangleDataContainer/FaceData/FaceAreas", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "surface_mesh_face_normals_array_path": "TriangleDataContainer/FaceData/FaceNormals" + "surface_mesh_face_areas_array_path": "TriangleDataContainer/Face Data/FaceAreas", + "surface_mesh_face_labels_array_path": "TriangleDataContainer/Face Data/FaceLabels", + "surface_mesh_face_normals_array_path": "TriangleDataContainer/Face Data/FaceNormals" }, "comments": "", "filter": { - "name": "simplnx::WriteGBCDTriangleDataFilter", + "name": "nx::core::WriteGBCDTriangleDataFilter", "uuid": "6e0da3a1-dc42-4b01-80aa-3af9e8209ee3" }, "isDisabled": false @@ -210,11 +1467,11 @@ }, "comments": "", "filter": { - "name": "simplnx::WriteDREAM3DFilter", + "name": "nx::core::WriteDREAM3DFilter", "uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" }, "isDisabled": false } ], - "workflowParams": [] -} + "version": 1 +} \ No newline at end of file diff --git a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(05) Small IN100 GBCD Metric.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(05) Small IN100 GBCD Metric.d3dpipeline index 49a094d251..ac05e2844c 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(05) Small IN100 GBCD Metric.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/EBSD SurfaceMeshing/(05) Small IN100 GBCD Metric.d3dpipeline @@ -1,144 +1,1402 @@ -{ +{ "isDisabled": false, - "name": "(05) SmallIN100 GBCD Metric.d3dpipeline", - "pinnedParams": [], + "name": "Untitled Pipeline", "pipeline": [ - { - "args": { - "import_data_object": { - "data_paths": [ - "DataContainer", - "DataContainer/CellData", - "DataContainer/Cell Data/Confidence Index", - "DataContainer/Cell Data/EulerAngles", - "DataContainer/Cell Data/Fit", - "DataContainer/Cell Data/Image Quality", - "DataContainer/Cell Data/Phases", - "DataContainer/Cell Data/SEM Signal", - "DataContainer/Cell Data/Mask", - "DataContainer/Cell Data/Quats", - "DataContainer/Cell Data/FeatureIds", - "DataContainer/Cell Data/ParentIds", - "DataContainer/Cell Data/IPFColors", - "DataContainer/Cell Data/GBManhattanDistances", - "DataContainer/Cell Data/TJManhattanDistances", - "DataContainer/Cell Data/QPManhattanDistances", - "DataContainer/Cell 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"phase_of_interest": 1, - "save_relative_err": false, - "surface_mesh_face_areas_array_path": "TriangleDataContainer/FaceData/FaceAreas", - "surface_mesh_face_labels_array_path": "TriangleDataContainer/FaceData/FaceLabels", - "surface_mesh_face_normals_array_path": "TriangleDataContainer/FaceData/FaceNormals", - "surface_mesh_feature_face_labels_array_path": "TriangleDataContainer/SharedFeatureFace/FaceLabels", - "input_triangle_geometry_path": "TriangleDataContainer" - }, - "comments": "", - "filter": { - "name": "simplnx::ComputeGBCDMetricBasedFilter", - "uuid": "fc0d695a-e381-4f11-a8fd-26d5b5cda30a" - }, - "isDisabled": false + "comments": "", + "filter": { + "name": "nx::core::ComputeGBCDMetricBasedFilter", + "uuid": "fc0d695a-e381-4f11-a8fd-26d5b5cda30a" }, - { - "args": { - "export_file_path": "Data/Output/SurfaceMesh/SmallIN100_GBCD_Metric.dream3d", - "write_xdmf_file": true - }, - "comments": "", - "filter": { - "name": "simplnx::WriteDREAM3DFilter", - "uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" - }, - "isDisabled": false - } - - ] -} + "isDisabled": false + }, + { + "args": { + "export_file_path": "Data/Output/SurfaceMesh/SmallIN100_GBCD_Metric.dream3d", + "write_xdmf_file": true + }, + "comments": "", + "filter": { + "name": "nx::core::WriteDREAM3DFilter", + "uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" + }, + "isDisabled": false + } + ], + "version": 1 +} \ No newline at end of file diff --git a/src/Plugins/OrientationAnalysis/pipelines/aptr12_Analysis.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/aptr12_Analysis.d3dpipeline index 2feb82df5d..a206a2e70e 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/aptr12_Analysis.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/aptr12_Analysis.d3dpipeline @@ -382,7 +382,7 @@ "feature_avg_misorientations_array_name": "FeatureAvgMisorientations", "feature_ids_path": "fw-ar-IF1-aptr12-corr/Cell Data/FeatureIds", "feature_reference_misorientations_array_name": "FeatureReferenceMisorientations", - "gb_euclidean_distances_array_path": "CellData/GBEuclideanDistances", + "gb_euclidean_distances_array_path": "Cell Data/GBEuclideanDistances", "quats_array_path": "fw-ar-IF1-aptr12-corr/Cell Data/Quats", "reference_orientation_index": 0 }, @@ -397,7 +397,7 @@ "args": { "cell_feature_attribute_matrix_path": "fw-ar-IF1-aptr12-corr/Cell Feature Data", "delimiter_index": 2, - "feature_data_file": "Data/Output/fw-ar-IF1-aptr12-corr/FeatureData.csv", + "feature_data_file": "Data/Output/fw-ar-IF1-aptr12-corr/Feature_Data.csv", "write_neighborlist_data": false, "write_num_features_line": true }, diff --git a/src/Plugins/OrientationAnalysis/pipelines/avtr12_Analysis.d3dpipeline b/src/Plugins/OrientationAnalysis/pipelines/avtr12_Analysis.d3dpipeline index 603af0480f..230d7eab51 100644 --- a/src/Plugins/OrientationAnalysis/pipelines/avtr12_Analysis.d3dpipeline +++ b/src/Plugins/OrientationAnalysis/pipelines/avtr12_Analysis.d3dpipeline @@ -382,7 +382,7 @@ "feature_avg_misorientations_array_name": "FeatureAvgMisorientations", "feature_ids_path": "fw-ar-IF1-avtr12-corr/Cell Data/FeatureIds", "feature_reference_misorientations_array_name": "FeatureReferenceMisorientations", - "gb_euclidean_distances_array_path": "CellData/GBEuclideanDistances", + "gb_euclidean_distances_array_path": "Cell Data/GBEuclideanDistances", "quats_array_path": "fw-ar-IF1-avtr12-corr/Cell Data/Quats", "reference_orientation_index": 0 }, @@ -397,7 +397,7 @@ "args": { "cell_feature_attribute_matrix_path": "fw-ar-IF1-avtr12-corr/Cell Feature Data", "delimiter_index": 2, - "feature_data_file": "Data/Output/fw-ar-IF1-avtr12-corr/FeatureData.csv", + "feature_data_file": "Data/Output/fw-ar-IF1-avtr12-corr/Feature_Data.csv", "write_neighborlist_data": false, "write_num_features_line": true }, diff --git a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDFilter.cpp b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDFilter.cpp index 7e8985d8be..37f0237fa8 100644 --- a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDFilter.cpp +++ b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDFilter.cpp @@ -78,8 +78,8 @@ Parameters ComputeGBCDFilter::parameters() const ArraySelectionParameter::AllowedTypes{DataType::int32}, ArraySelectionParameter::AllowedComponentShapes{{1}})); params.insertSeparator(Parameters::Separator{"Output Face Ensemble Data"}); - params.insert( - std::make_unique(k_FaceEnsembleAttributeMatrixName_Key, "Face Ensemble Attribute Matrix", "The name of the created face ensemble attribute matrix", "FaceEnsembleData")); + params.insert(std::make_unique(k_FaceEnsembleAttributeMatrixName_Key, "Face Ensemble Attribute Matrix", "The name of the created face ensemble attribute matrix", + "Face Ensemble Data")); params.insert(std::make_unique(k_GBCDArrayName_Key, "GBCD", "5 parameter GBCD data. The 6th component is used internally to track the northern vs. southern hemisphere of the Lambert sphere", "GBCD")); diff --git a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDPoleFigureFilter.cpp b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDPoleFigureFilter.cpp index dcb5fa226e..5aaccc141d 100644 --- a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDPoleFigureFilter.cpp +++ b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeGBCDPoleFigureFilter.cpp @@ -63,7 +63,7 @@ Parameters ComputeGBCDPoleFigureFilter::parameters() const params.insertSeparator(Parameters::Separator{"Input Triangle Ensemble Data"}); params.insert(std::make_unique(k_GBCDArrayPath_Key, "Input GBCD", "5 parameter GBCD data. The 6th component is used internally to track the northern vs. southern hemisphere of the Lambert sphere", - DataPath({"FaceEnsembleData", "GBCD"}), ArraySelectionParameter::AllowedTypes{DataType::float64})); + DataPath({"Face Ensemble Data", "GBCD"}), ArraySelectionParameter::AllowedTypes{DataType::float64})); params.insert(std::make_unique(k_CrystalStructuresArrayPath_Key, "Crystal Structures", "Enumeration representing the crystal structure for each Ensemble", DataPath({"Ensemble Data", "CrystalStructures"}), ArraySelectionParameter::AllowedTypes{DataType::uint32}, ArraySelectionParameter::AllowedComponentShapes{{1}})); diff --git a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeMisorientationsFilter.cpp b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeMisorientationsFilter.cpp index 106c3b9ae0..718ee6e8a1 100644 --- a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeMisorientationsFilter.cpp +++ b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeMisorientationsFilter.cpp @@ -60,12 +60,12 @@ Parameters ComputeMisorientationsFilter::parameters() const params.insertSeparator(Parameters::Separator{"Input Feature Data"}); params.insert(std::make_unique(k_NeighborListArrayPath_Key, "Feature Neighbor List", "List of the contiguous neighboring Features for a given Feature", - DataPath({"DataContainer", "FeatureData", "NeighborList"}), NeighborListSelectionParameter::AllowedTypes{nx::core::DataType::int32})); + DataPath({"DataContainer", "Feature Data", "NeighborList"}), NeighborListSelectionParameter::AllowedTypes{nx::core::DataType::int32})); params.insert(std::make_unique(k_AvgQuatsArrayPath_Key, "Feature Average Quaternions", "Defines the average orientation of the Feature in quaternion representation", - DataPath({"DataContainer", "FeatureData", "AvgQuats"}), ArraySelectionParameter::AllowedTypes{nx::core::DataType::float32}, + DataPath({"DataContainer", "Feature Data", "AvgQuats"}), ArraySelectionParameter::AllowedTypes{nx::core::DataType::float32}, ArraySelectionParameter::AllowedComponentShapes{{4}})); params.insert(std::make_unique(k_FeaturePhasesArrayPath_Key, "Feature Phases", "Specifies to which Ensemble each Feature belongs", - DataPath({"DataContainer", "FeatureData", "Phases"}), ArraySelectionParameter::AllowedTypes{nx::core::DataType::int32}, + DataPath({"DataContainer", "Feature Data", "Phases"}), ArraySelectionParameter::AllowedTypes{nx::core::DataType::int32}, ArraySelectionParameter::AllowedComponentShapes{{1}})); params.insertSeparator(Parameters::Separator{"Input Ensemble Data"}); diff --git a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeTriangleGeomShapesFilter.cpp b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeTriangleGeomShapesFilter.cpp index 20a8431ebc..8c20b62cea 100644 --- a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeTriangleGeomShapesFilter.cpp +++ b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/ComputeTriangleGeomShapesFilter.cpp @@ -56,12 +56,12 @@ Parameters ComputeTriangleGeomShapesFilter::parameters() const params.insertSeparator(Parameters::Separator{"Input Face Feature Data"}); params.insert(std::make_unique(k_FeatureAttributeMatrixPath_Key, "Face Feature Attribute Matrix", - "The DataPath to the AttributeMatrix that holds feature data for the faces", DataPath({"TriangleDataContainer", "FaceFeatureData"}), + "The DataPath to the AttributeMatrix that holds feature data for the faces", DataPath({"TriangleDataContainer", "Face Feature Data"}), DataGroupSelectionParameter::AllowedTypes{BaseGroup::GroupType::AttributeMatrix})); params.insert(std::make_unique(k_CentroidsArrayPath_Key, "Face Feature Centroids", "Input DataPath to the **Feature Centroids** for the face data", - DataPath({"FaceFeatureData", "Centroids"}), ArraySelectionParameter::AllowedTypes{DataType::float32})); + DataPath({"Face Feature Data", "Centroids"}), ArraySelectionParameter::AllowedTypes{DataType::float32})); params.insert(std::make_unique(k_VolumesArrayPath_Key, "Face Feature Volumes", "Input DataPath to the **Feature Volumes** for the face data", - DataPath({"FaceFeatureData", "Volumes"}), ArraySelectionParameter::AllowedTypes{DataType::float32})); + DataPath({"Face Feature Data", "Volumes"}), ArraySelectionParameter::AllowedTypes{DataType::float32})); params.insertSeparator(Parameters::Separator{"Output Face Feature Data"}); params.insert(std::make_unique(k_Omega3sArrayName_Key, "Omega3s", "The name of the DataArray that holds the calculated Omega3 values", "Omega3s")); diff --git a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDGMTFileFilter.cpp b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDGMTFileFilter.cpp index 4da3b7997e..4f708564cd 100644 --- a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDGMTFileFilter.cpp +++ b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDGMTFileFilter.cpp @@ -64,7 +64,7 @@ Parameters WriteGBCDGMTFileFilter::parameters() const params.insertSeparator(Parameters::Separator{"Input Triangle Ensemble Data"}); params.insert(std::make_unique(k_GBCDArrayPath_Key, "GBCD", "5 parameter GBCD data. The 6th component is used internally to track the northern vs. southern hemisphere of the Lambert sphere", - DataPath({"FaceEnsembleData", "GBCD"}), ArraySelectionParameter::AllowedTypes{DataType::float64})); + DataPath({"Face Ensemble Data", "GBCD"}), ArraySelectionParameter::AllowedTypes{DataType::float64})); params.insert(std::make_unique(k_CrystalStructuresArrayPath_Key, "Crystal Structures", "Enumeration representing the crystal structure for each Ensemble", DataPath({"Ensemble Data", "CrystalStructures"}), ArraySelectionParameter::AllowedTypes{DataType::uint32}, ArraySelectionParameter::AllowedComponentShapes{{1}})); diff --git a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDTriangleDataFilter.cpp b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDTriangleDataFilter.cpp index 687bb5c05e..6762343d3b 100644 --- a/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDTriangleDataFilter.cpp +++ b/src/Plugins/OrientationAnalysis/src/OrientationAnalysis/Filters/WriteGBCDTriangleDataFilter.cpp @@ -59,13 +59,13 @@ Parameters WriteGBCDTriangleDataFilter::parameters() const FileSystemPathParameter::PathType::OutputFile)); params.insertSeparator(Parameters::Separator{"Input Triangle Face Data"}); params.insert(std::make_unique(k_SurfaceMeshFaceLabelsArrayPath_Key, "Face Labels", "Specifies which Features are on either side of each Face", - DataPath({"[Triangle Geometry]", "FaceData", "FaceLabels"}), ArraySelectionParameter::AllowedTypes{DataType::int32}, + DataPath({"[Triangle Geometry]", "Face Data", "FaceLabels"}), ArraySelectionParameter::AllowedTypes{DataType::int32}, ArraySelectionParameter::AllowedComponentShapes{{2}})); params.insert(std::make_unique(k_SurfaceMeshFaceNormalsArrayPath_Key, "Face Normals", "Specifies the normal of each Face", - DataPath({"[Triangle Geometry]", "FaceData", "FaceNormals"}), ArraySelectionParameter::AllowedTypes{DataType::float64}, + DataPath({"[Triangle Geometry]", "Face Data", "FaceNormals"}), ArraySelectionParameter::AllowedTypes{DataType::float64}, ArraySelectionParameter::AllowedComponentShapes{{3}})); params.insert(std::make_unique(k_SurfaceMeshFaceAreasArrayPath_Key, "Face Areas", "Specifies the area of each Face", - DataPath({"[Triangle Geometry]", "FaceData", "FaceAreas"}), ArraySelectionParameter::AllowedTypes{DataType::float64}, + DataPath({"[Triangle Geometry]", "Face Data", "FaceAreas"}), ArraySelectionParameter::AllowedTypes{DataType::float64}, ArraySelectionParameter::AllowedComponentShapes{{1}})); params.insertSeparator(Parameters::Separator{"Input Feature Data"}); params.insert(std::make_unique( diff --git a/src/Plugins/OrientationAnalysis/test/WritePoleFigureTest.cpp b/src/Plugins/OrientationAnalysis/test/WritePoleFigureTest.cpp index f3126ef256..43509483e7 100644 --- a/src/Plugins/OrientationAnalysis/test/WritePoleFigureTest.cpp +++ b/src/Plugins/OrientationAnalysis/test/WritePoleFigureTest.cpp @@ -86,7 +86,7 @@ TEST_CASE("OrientationAnalysis::WritePoleFigureFilter-1", "[OrientationAnalysis] args.insertOrAssign(WritePoleFigureFilter::k_UseMask_Key, std::make_any(false)); args.insertOrAssign(WritePoleFigureFilter::k_ImageGeometryPath_Key, std::make_any(DataPath({"fw-ar-IF1-aptr12-corr Discrete Pole Figure [CALCULATED]"}))); - DataPath calculatedImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure [CALCULATED]", "CellData", fmt::format("{}{}", k_ImagePrefix, 1)}); + DataPath calculatedImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure [CALCULATED]", "Cell Data", fmt::format("{}{}", k_ImagePrefix, 1)}); DataPath exemplarImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure", "CellData", "Image"}); args.insertOrAssign(WritePoleFigureFilter::k_CellEulerAnglesArrayPath_Key, std::make_any(DataPath({"fw-ar-IF1-aptr12-corr", "Cell Data", "EulerAngles"}))); @@ -139,7 +139,7 @@ TEST_CASE("OrientationAnalysis::WritePoleFigureFilter-2", "[OrientationAnalysis] args.insertOrAssign(WritePoleFigureFilter::k_UseMask_Key, std::make_any(true)); args.insertOrAssign(WritePoleFigureFilter::k_ImageGeometryPath_Key, std::make_any(DataPath({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked [CALCULATED]"}))); - DataPath calculatedImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked [CALCULATED]", "CellData", fmt::format("{}{}", k_ImagePrefix, 1)}); + DataPath calculatedImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked [CALCULATED]", "Cell Data", fmt::format("{}{}", k_ImagePrefix, 1)}); DataPath exemplarImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked", "CellData", "Image"}); args.insertOrAssign(WritePoleFigureFilter::k_CellEulerAnglesArrayPath_Key, std::make_any(DataPath({"fw-ar-IF1-aptr12-corr", "Cell Data", "EulerAngles"}))); @@ -193,7 +193,7 @@ TEST_CASE("OrientationAnalysis::WritePoleFigureFilter-3", "[OrientationAnalysis] args.insertOrAssign(WritePoleFigureFilter::k_UseMask_Key, std::make_any(true)); args.insertOrAssign(WritePoleFigureFilter::k_ImageGeometryPath_Key, std::make_any(DataPath({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked Color [CALCULATED]"}))); - DataPath calculatedImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked Color [CALCULATED]", "CellData", fmt::format("{}{}", k_ImagePrefix, 1)}); + DataPath calculatedImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked Color [CALCULATED]", "Cell Data", fmt::format("{}{}", k_ImagePrefix, 1)}); DataPath exemplarImageData({"fw-ar-IF1-aptr12-corr Discrete Pole Figure Masked Color", "CellData", "Image"}); args.insertOrAssign(WritePoleFigureFilter::k_CellEulerAnglesArrayPath_Key, std::make_any(DataPath({"fw-ar-IF1-aptr12-corr", "Cell Data", "EulerAngles"}))); diff --git a/src/Plugins/SimplnxCore/pipelines/AvizoWriters.d3dpipeline b/src/Plugins/SimplnxCore/pipelines/AvizoWriters.d3dpipeline index 349fb2c676..99fbc31248 100644 --- a/src/Plugins/SimplnxCore/pipelines/AvizoWriters.d3dpipeline +++ b/src/Plugins/SimplnxCore/pipelines/AvizoWriters.d3dpipeline @@ -8,7 +8,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", diff --git a/src/Plugins/SimplnxCore/pipelines/ComputeBiasedFeatures.d3dpipeline b/src/Plugins/SimplnxCore/pipelines/ComputeBiasedFeatures.d3dpipeline index 5043e2a0d2..494d31692d 100644 --- a/src/Plugins/SimplnxCore/pipelines/ComputeBiasedFeatures.d3dpipeline +++ b/src/Plugins/SimplnxCore/pipelines/ComputeBiasedFeatures.d3dpipeline @@ -8,7 +8,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", diff --git a/src/Plugins/SimplnxCore/pipelines/ComputeBoundaryCells.d3dpipeline b/src/Plugins/SimplnxCore/pipelines/ComputeBoundaryCells.d3dpipeline index db7845870e..25546c19b7 100644 --- a/src/Plugins/SimplnxCore/pipelines/ComputeBoundaryCells.d3dpipeline +++ b/src/Plugins/SimplnxCore/pipelines/ComputeBoundaryCells.d3dpipeline @@ -8,7 +8,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", diff --git a/src/Plugins/SimplnxCore/pipelines/ExtractVertexGeometry.d3dpipeline b/src/Plugins/SimplnxCore/pipelines/ExtractVertexGeometry.d3dpipeline index 697dec64fa..f06b0ff013 100644 --- a/src/Plugins/SimplnxCore/pipelines/ExtractVertexGeometry.d3dpipeline +++ b/src/Plugins/SimplnxCore/pipelines/ExtractVertexGeometry.d3dpipeline @@ -172,7 +172,7 @@ "input_grid_geometry_path": "DataContainer", "mask_array_path": "DataContainer/Cell Data/Mask Y Pos", "output_shared_vertex_list_name": "SharedVertexList", - "output_vertex_attr_matrix_name": "VertexData", + "output_vertex_attr_matrix_name": "Vertex Data", "output_vertex_geometry_path": "Vertex Geometry", "use_mask": true }, diff --git a/src/Plugins/SimplnxCore/pipelines/Import_CSV_File.d3dpipeline b/src/Plugins/SimplnxCore/pipelines/Import_CSV_File.d3dpipeline index 9775b6eb4a..3c24c32fac 100644 --- a/src/Plugins/SimplnxCore/pipelines/Import_CSV_File.d3dpipeline +++ b/src/Plugins/SimplnxCore/pipelines/Import_CSV_File.d3dpipeline @@ -12,7 +12,7 @@ "name": "nx::core::WriteDREAM3DFilter", "uuid": "b3a95784-2ced-41ec-8d3d-0242ac130003" }, - "isDisabled": false + "isDisabled": true }, { "args": { @@ -165,7 +165,7 @@ }, { "args": { - "file_name": "Data/Output/Import_ASCII_IPF.png", + "file_name": "Data/Output/Import_CSV_Example/Import_ASCII_IPF.png", "image_array_path": "[Image Geometry]/Cell Data//IPFColors", "index_offset": 0, "input_image_geometry_path": "[Image Geometry]", diff --git a/src/Plugins/SimplnxCore/pipelines/VtkRectilinearGridWriter.d3dpipeline b/src/Plugins/SimplnxCore/pipelines/VtkRectilinearGridWriter.d3dpipeline index 898efeca73..a7f277b5a9 100644 --- a/src/Plugins/SimplnxCore/pipelines/VtkRectilinearGridWriter.d3dpipeline +++ b/src/Plugins/SimplnxCore/pipelines/VtkRectilinearGridWriter.d3dpipeline @@ -8,7 +8,7 @@ "import_data_object": { "data_paths": [ "DataContainer", - "DataContainer/CellData", + "DataContainer/Cell Data", "DataContainer/Cell Data/Image Quality", "DataContainer/Cell Data/Confidence Index", "DataContainer/Cell Data/SEM Signal", @@ -160,7 +160,7 @@ "alignment_shift_file_name": "Data/Output/Alignment_By_Feature_Centroid_Shifts.txt", "mask_array_path": "DataContainer/Cell Data/Mask", "reference_slice": 0, - "selected_cell_data_path": "DataContainer/CellData", + "selected_cell_data_path": "DataContainer/Cell Data", "input_image_geometry_path": "DataContainer", "use_reference_slice": true, "write_alignment_shifts": false @@ -360,7 +360,7 @@ { "args": { "apply_to_single_phase": false, - "cell_attribute_matrix_path": "DataContainer/CellData", + "cell_attribute_matrix_path": "DataContainer/Cell Data", "feature_ids_path": "DataContainer/Cell Data/FeatureIds", "feature_phases_path": "Data Container/Feature Data/Phases", "ignored_voxel_arrays": [], diff --git a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeNumFeaturesFilter.cpp b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeNumFeaturesFilter.cpp index 29017f46e1..f7dc055d78 100644 --- a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeNumFeaturesFilter.cpp +++ b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeNumFeaturesFilter.cpp @@ -52,7 +52,7 @@ Parameters ComputeNumFeaturesFilter::parameters() const params.insertSeparator(Parameters::Separator{"Input Feature Data"}); params.insert(std::make_unique(k_FeaturePhasesArrayPath_Key, "Feature Phases", "Array specifying which Ensemble each Feature belongs", - DataPath({"DataContainer", "FeatureData", "Phases"}), nx::core::GetAllDataTypes())); + DataPath({"DataContainer", "Feature Data", "Phases"}), nx::core::GetAllDataTypes())); params.insertSeparator(Parameters::Separator{"Input Ensemble Data"}); params.insert(std::make_unique(k_EnsembleAttributeMatrixPath_Key, "Ensemble Attribute Matrix", diff --git a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomCentroidsFilter.cpp b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomCentroidsFilter.cpp index bd4c18ff73..830514a616 100644 --- a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomCentroidsFilter.cpp +++ b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomCentroidsFilter.cpp @@ -56,7 +56,7 @@ Parameters ComputeTriangleGeomCentroidsFilter::parameters() const ArraySelectionParameter::AllowedTypes{nx::core::DataType::int32})); params.insertSeparator(Parameters::Separator{"Input Face Feature Data"}); params.insert(std::make_unique(k_FeatureAttributeMatrixPath_Key, "Face Feature Attribute Matrix", - "The DataPath to the AttributeMatrix that holds feature data for the faces", DataPath({"TriangleDataContainer", "FaceFeatureData"}), + "The DataPath to the AttributeMatrix that holds feature data for the faces", DataPath({"TriangleDataContainer", "Face Feature Data"}), DataGroupSelectionParameter::AllowedTypes{BaseGroup::GroupType::AttributeMatrix})); params.insertSeparator(Parameters::Separator{"Output Face Feature Data"}); params.insert(std::make_unique(k_CentroidsArrayName_Key, "Calculated Centroids", "Centroid values created in the Face Feature Data", "Centroids")); diff --git a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomSizesFilter.cpp b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomSizesFilter.cpp index c33a695ff2..06b7b174c5 100644 --- a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomSizesFilter.cpp +++ b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ComputeTriangleGeomSizesFilter.cpp @@ -57,7 +57,7 @@ Parameters ComputeTriangleGeomSizesFilter::parameters() const ArraySelectionParameter::AllowedTypes{nx::core::DataType::int32})); params.insertSeparator(Parameters::Separator{"Input Face Feature Data"}); params.insert(std::make_unique(k_FeatureAttributeMatrixPath_Key, "Face Feature Attribute Matrix", - "The DataPath to the AttributeMatrix that holds feature data for the faces", DataPath({"TriangleDataContainer", "FaceFeatureData"}), + "The DataPath to the AttributeMatrix that holds feature data for the faces", DataPath({"TriangleDataContainer", "Face Feature Data"}), DataGroupSelectionParameter::AllowedTypes{BaseGroup::GroupType::AttributeMatrix})); params.insertSeparator(Parameters::Separator{"Output Face Feature Data"}); params.insert(std::make_unique(k_VolumesArrayName_Key, "Calculated Volumes", "Calculated volumes data created in the Face Feature Data Attribute Matrix", "Volumes")); diff --git a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ExtractVertexGeometryFilter.cpp b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ExtractVertexGeometryFilter.cpp index 917319e6e8..095bb40471 100644 --- a/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ExtractVertexGeometryFilter.cpp +++ b/src/Plugins/SimplnxCore/src/SimplnxCore/Filters/ExtractVertexGeometryFilter.cpp @@ -87,7 +87,7 @@ Parameters ExtractVertexGeometryFilter::parameters() const params.insert( std::make_unique(k_VertexGeometryPath_Key, "Output Vertex Geometry", "The complete path to the vertex geometry that will be created", DataPath({"Vertex Geometry"}))); params.insert(std::make_unique(k_VertexAttrMatrixName_Key, "Output Vertex Attribute Matrix Name", "The name of the vertex attribute matrix that will be created", - std::string{"VertexData"})); + std::string{"Vertex Data"})); params.insert(std::make_unique(k_SharedVertexListName_Key, "Output Shared Vertex List Name", "The name of the shared vertex list that will be created", std::string{"SharedVertexList"})); diff --git a/src/simplnx/Filter/Actions/CreateVertexGeometryAction.hpp b/src/simplnx/Filter/Actions/CreateVertexGeometryAction.hpp index 684698e088..f87366aed6 100644 --- a/src/simplnx/Filter/Actions/CreateVertexGeometryAction.hpp +++ b/src/simplnx/Filter/Actions/CreateVertexGeometryAction.hpp @@ -23,7 +23,7 @@ class CreateVertexGeometryAction : public IDataCreationAction { public: static constexpr StringLiteral k_SharedVertexListName = "SharedVertexList"; - static constexpr StringLiteral k_VertexAttributeMatrixName = "VertexData"; + static constexpr StringLiteral k_VertexAttributeMatrixName = "Vertex Data"; /** * @brief Constructor to create the vertex geometry and allocate a default array for the shared vertex list diff --git a/wrapping/python/docs/source/Developer_API.rst b/wrapping/python/docs/source/Developer_API.rst index b1938784aa..370af4e095 100644 --- a/wrapping/python/docs/source/Developer_API.rst +++ b/wrapping/python/docs/source/Developer_API.rst @@ -1402,12 +1402,12 @@ General Parameters import simplnx as nx dataset1 = nx.ReadHDF5DatasetParameter.DatasetImportInfo() - dataset1.dataset_path = "/DataStructure/DataContainer/CellData/Confidence Index" + dataset1.dataset_path = "/DataStructure/DataContainer/Cell Data/Confidence Index" dataset1.tuple_dims = "117,201,189" dataset1.component_dims = "1" dataset2 = nx.ReadHDF5DatasetParameter.DatasetImportInfo() - dataset2.dataset_path = "/DataStructure/DataContainer/CellData/EulerAngles" + dataset2.dataset_path = "/DataStructure/DataContainer/Cell Data/EulerAngles" dataset2.tuple_dims = "117,201,189" dataset2.component_dims = "3" diff --git a/wrapping/python/docs/source/User_API.rst b/wrapping/python/docs/source/User_API.rst index 6009ae3ea6..efa91d8e32 100644 --- a/wrapping/python/docs/source/User_API.rst +++ b/wrapping/python/docs/source/User_API.rst @@ -534,12 +534,12 @@ General Parameters .. code:: python dataset1 = nx.ReadHDF5DatasetParameter.DatasetImportInfo() - dataset1.dataset_path = "/DataStructure/DataContainer/CellData/Confidence Index" + dataset1.dataset_path = "/DataStructure/DataContainer/Cell Data/Confidence Index" dataset1.tuple_dims = "117,201,189" dataset1.component_dims = "1" dataset2 = nx.ReadHDF5DatasetParameter.DatasetImportInfo() - dataset2.dataset_path = "/DataStructure/DataContainer/CellData/EulerAngles" + dataset2.dataset_path = "/DataStructure/DataContainer/Cell Data/EulerAngles" dataset2.tuple_dims = "117,201,189" dataset2.component_dims = "3" diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/01_Small_IN100_Quick_Mesh.py b/wrapping/python/examples/pipelines/OrientationAnalysis/01_Small_IN100_Quick_Mesh.py index e71ce2a39a..3b108a9b01 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/01_Small_IN100_Quick_Mesh.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/01_Small_IN100_Quick_Mesh.py @@ -55,7 +55,7 @@ # Execute Filter with Parameters result = nx_filter.execute( data_structure=data_structure, - face_data_group_name=("FaceData"), + face_data_group_name=("Face Data"), face_feature_attribute_matrix_name=("Face Feature Data"), face_labels_array_name=("FaceLabels"), feature_ids_path=nx.DataPath("DataContainer/Cell Data/FeatureIds"), @@ -64,7 +64,7 @@ input_grid_geometry_path=nx.DataPath("DataContainer"), node_types_array_name=("NodeType"), output_triangle_geometry_path=nx.DataPath("TriangleDataContainer"), - vertex_data_group_name=("VertexData") + vertex_data_group_name=("Vertex Data") ) nxtest.check_filter_result(nx_filter, result) diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/02_Small_IN100_Smooth_Mesh.py b/wrapping/python/examples/pipelines/OrientationAnalysis/02_Small_IN100_Smooth_Mesh.py index 7b1c843e85..78ff22aa06 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/02_Small_IN100_Smooth_Mesh.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/02_Small_IN100_Smooth_Mesh.py @@ -30,7 +30,7 @@ lambda_value=0.25, mu_factor=0.2, quad_point_lambda=0.15000001, - surface_mesh_node_type_array_path=nx.DataPath("TriangleDataContainer/VertexData/NodeType"), + surface_mesh_node_type_array_path=nx.DataPath("TriangleDataContainer/Vertex Data/NodeType"), surface_point_lambda=0.0, surface_quad_point_lambda=0.0, surface_triple_line_lambda=0.0, diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/03_Small_IN100_Mesh_Statistics.py b/wrapping/python/examples/pipelines/OrientationAnalysis/03_Small_IN100_Mesh_Statistics.py index daf09ffd08..1317303dd3 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/03_Small_IN100_Mesh_Statistics.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/03_Small_IN100_Mesh_Statistics.py @@ -63,8 +63,8 @@ feature_euler_angles_array_path=nx.DataPath("DataContainer/Cell Feature Data/AvgEulerAngles"), feature_phases_array_path=nx.DataPath("DataContainer/Cell Feature Data/Phases"), surface_mesh_face_ipf_colors_array_name="FaceIPFColors", - surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), - surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceNormals") + surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), + surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceNormals") ) nxtest.check_filter_result(nx_filter, result) @@ -77,29 +77,13 @@ avg_quats_array_path=nx.DataPath("DataContainer/Cell Feature Data/AvgQuats"), crystal_structures_array_path=nx.DataPath("DataContainer/Cell Ensemble Data/CrystalStructures"), feature_phases_array_path=nx.DataPath("DataContainer/Cell Feature Data/Phases"), - surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), + surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), surface_mesh_face_misorientation_colors_array_name="FaceMisorientationColors" ) nxtest.check_filter_result(nx_filter, result) # Filter 7 # Instantiate Filter -nx_filter = nx.SharedFeatureFaceFilter() -# Execute Filter with Parameters -result = nx_filter.execute( - data_structure=data_structure, - face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), - feature_face_ids_array_name="SharedFeatureFaceId", - feature_face_labels_array_name="FaceLabels", - feature_num_triangles_array_name="NumTriangles", - grain_boundary_attribute_matrix_name="SharedFeatureFace", - randomize_features=False, - input_triangle_geometry_path=nx.DataPath("TriangleDataContainer") -) -nxtest.check_filter_result(nx_filter, result) - -# Filter 8 -# Instantiate Filter nx_filter = nx.WriteDREAM3DFilter() # Execute Filter with Parameters output_file_path = nxtest.get_data_directory() / "Output/SurfaceMesh/SmallIN100_MeshStats.dream3d" diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/04_Small_IN100_GBCD.py b/wrapping/python/examples/pipelines/OrientationAnalysis/04_Small_IN100_GBCD.py index 60fc8b759c..8a4c8a7e77 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/04_Small_IN100_GBCD.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/04_Small_IN100_GBCD.py @@ -27,14 +27,14 @@ result = nx_filter.execute( data_structure=data_structure, crystal_structures_array_path=nx.DataPath("DataContainer/Cell Ensemble Data/CrystalStructures"), - face_ensemble_attribute_matrix_name="FaceEnsembleData", + face_ensemble_attribute_matrix_name="Face Ensemble Data", feature_euler_angles_array_path=nx.DataPath("DataContainer/Cell Feature Data/AvgEulerAngles"), feature_phases_array_path=nx.DataPath("DataContainer/Cell Feature Data/Phases"), gbcd_array_name="GBCD", gbcd_resolution=9.0, - surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceAreas"), - surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), - surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceNormals"), + surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceAreas"), + surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), + surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceNormals"), input_triangle_geometry_path=nx.DataPath("TriangleDataContainer") ) nxtest.check_filter_result(nx_filter, result) @@ -49,7 +49,7 @@ cell_attribute_matrix_name="Cell Data", cell_intensity_array_name="MRD", crystal_structures_array_path=nx.DataPath("DataContainer/Cell Ensemble Data/CrystalStructures"), - gbcd_array_path=nx.DataPath("TriangleDataContainer/FaceEnsembleData/GBCD"), + gbcd_array_path=nx.DataPath("TriangleDataContainer/Face Ensemble Data/GBCD"), output_image_geometry_path=nx.DataPath("GBCD Pole Figure [Sigma 3]"), misorientation_rotation=[60.0, 1.0, 1.0, 1.0], output_image_dimension=100, @@ -66,7 +66,7 @@ cell_attribute_matrix_name="Cell Data", cell_intensity_array_name="MRD", crystal_structures_array_path=nx.DataPath("DataContainer/Cell Ensemble Data/CrystalStructures"), - gbcd_array_path=nx.DataPath("TriangleDataContainer/FaceEnsembleData/GBCD"), + gbcd_array_path=nx.DataPath("TriangleDataContainer/Face Ensemble Data/GBCD"), output_image_geometry_path=nx.DataPath("GBCD Pole Figure [Sigma 9]"), misorientation_rotation=[39.0, 1.0, 1.0, 1.0], output_image_dimension=100, @@ -83,7 +83,7 @@ cell_attribute_matrix_name="Cell Data", cell_intensity_array_name="MRD", crystal_structures_array_path=nx.DataPath("DataContainer/Cell Ensemble Data/CrystalStructures"), - gbcd_array_path=nx.DataPath("TriangleDataContainer/FaceEnsembleData/GBCD"), + gbcd_array_path=nx.DataPath("TriangleDataContainer/Face Ensemble Data/GBCD"), output_image_geometry_path=nx.DataPath("GBCD Pole Figure [Sigma 11]"), misorientation_rotation=[50.5, 1.0, 1.0, 1.0], output_image_dimension=100, @@ -98,7 +98,7 @@ result = nx_filter.execute( data_structure=data_structure, crystal_structures_array_path=nx.DataPath("DataContainer/Cell Ensemble Data/CrystalStructures"), - gbcd_array_path=nx.DataPath("TriangleDataContainer/FaceEnsembleData/GBCD"), + gbcd_array_path=nx.DataPath("TriangleDataContainer/Face Ensemble Data/GBCD"), misorientation_rotation=[60.0, 1.0, 1.0, 1.0], output_file="Data/Output/SmallIN100GBCD/SmallIn100GMT_1.dat", phase_of_interest=1 @@ -113,9 +113,9 @@ data_structure=data_structure, feature_euler_angles_array_path=nx.DataPath("DataContainer/Cell Feature Data/AvgEulerAngles"), output_file="Data/Output/SmallIN100GBCD/SmallIn100Triangles.ph", - surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceAreas"), - surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), - surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceNormals") + surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceAreas"), + surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), + surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceNormals") ) nxtest.check_filter_result(nx_filter, result) diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/05_Small_IN100_GBCD_Metric.py b/wrapping/python/examples/pipelines/OrientationAnalysis/05_Small_IN100_GBCD_Metric.py index 32deb04b1d..d022dc510a 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/05_Small_IN100_GBCD_Metric.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/05_Small_IN100_GBCD_Metric.py @@ -13,9 +13,10 @@ # Instantiate Import Data Parameter import_data = nx.Dream3dImportParameter.ImportData() import_data.file_path = str(nxtest.get_data_directory() / "Output/SurfaceMesh/SmallIN100_MeshStats.dream3d") + import_data.data_paths =[ nx.DataPath("DataContainer"), - nx.DataPath("DataContainer/CellData"), + nx.DataPath("DataContainer/Cell Data"), nx.DataPath("DataContainer/Cell Data/Image Quality"), nx.DataPath("DataContainer/Cell Data/Confidence Index"), nx.DataPath("DataContainer/Cell Data/SEM Signal"), @@ -63,14 +64,15 @@ nx.DataPath("TriangleDataContainer/SharedTriList"), nx.DataPath("TriangleDataContainer/SharedVertexList"), nx.DataPath("TriangleDataContainer/FaceData"), - nx.DataPath("TriangleDataContainer/VertexData"), - nx.DataPath("TriangleDataContainer/VertexData/NodeType"), - nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), + nx.DataPath("TriangleDataContainer/Vertex Data"), + nx.DataPath("TriangleDataContainer/Vertex Data/NodeType"), + nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), nx.DataPath("TriangleDataContainer/Edge List"), - nx.DataPath("TriangleDataContainer/FaceData/FaceAreas"), - nx.DataPath("TriangleDataContainer/FaceData/FaceNormals"), - nx.DataPath("TriangleDataContainer/FaceData/FaceDihedralAngles") + nx.DataPath("TriangleDataContainer/Face Data/FaceAreas"), + nx.DataPath("TriangleDataContainer/Face Data/FaceNormals"), + nx.DataPath("TriangleDataContainer/Face Data/FaceDihedralAngles") ] +import_data.data_paths = None # Instantiate Filter nx_filter = nx.ReadDREAM3DFilter() @@ -86,7 +88,7 @@ # Execute Filter with Parameters result = nx_filter.execute( data_structure=data_structure, - face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), + face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), feature_face_ids_array_name="SharedFeatureFaceId", feature_face_labels_array_name="FaceLabels", feature_num_triangles_array_name="NumTriangles", @@ -110,13 +112,13 @@ feature_euler_angles_array_path=nx.DataPath("DataContainer/Cell Feature Data/AvgEulerAngles"), feature_phases_array_path=nx.DataPath("DataContainer/Cell Feature Data/Phases"), misorientation_rotation=[1.0, 1.0, 1.0, 60.0], - node_types_array_path=nx.DataPath("TriangleDataContainer/VertexData/NodeType"), + node_types_array_path=nx.DataPath("TriangleDataContainer/Vertex Data/NodeType"), num_sampl_pts=3000, phase_of_interest=1, save_relative_err=False, - surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceAreas"), - surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), - surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceNormals"), + surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceAreas"), + surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), + surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceNormals"), surface_mesh_feature_face_labels_array_path=nx.DataPath("TriangleDataContainer/SharedFeatureFace/FaceLabels"), input_triangle_geometry_path=nx.DataPath("TriangleDataContainer") ) diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/08_Small_IN100_Full_Reconstruction.py b/wrapping/python/examples/pipelines/OrientationAnalysis/08_Small_IN100_Full_Reconstruction.py index a681544101..fbe8140c78 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/08_Small_IN100_Full_Reconstruction.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/08_Small_IN100_Full_Reconstruction.py @@ -110,7 +110,7 @@ data_structure=data_structure, mask_array_path=nx.DataPath("DataContainer/Cell Data/Mask"), reference_slice=0, - selected_cell_data_path=nx.DataPath("DataContainer/CellData"), + selected_cell_data_path=nx.DataPath("DataContainer/Cell Data"), input_image_geometry_path=nx.DataPath("DataContainer"), use_reference_slice=True, write_alignment_shifts=False diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/APTR12_Analysis.py b/wrapping/python/examples/pipelines/OrientationAnalysis/APTR12_Analysis.py index 7772c3382c..52acacfc4e 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/APTR12_Analysis.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/APTR12_Analysis.py @@ -331,7 +331,7 @@ data_structure=data_structure, cell_feature_attribute_matrix_path=nx.DataPath("fw-ar-IF1-aptr12-corr/Cell Feature Data"), delimiter_index=2, - feature_data_file=nxtest.get_data_directory() / "Output/fw-ar-IF1-aptr12-corr/FeatureData.csv", + feature_data_file=nxtest.get_data_directory() / "Output/fw-ar-IF1-aptr12-corr/Feature_Data.csv", write_neighborlist_data=False, write_num_features_line=True ) diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/AVTR12_Analysis.py b/wrapping/python/examples/pipelines/OrientationAnalysis/AVTR12_Analysis.py index 2717d78d4d..70da3ca3cf 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/AVTR12_Analysis.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/AVTR12_Analysis.py @@ -331,7 +331,7 @@ data_structure=data_structure, cell_feature_attribute_matrix_path=nx.DataPath("fw-ar-IF1-avtr12-corr/Cell Feature Data"), delimiter_index=2, - feature_data_file=nxtest.get_data_directory() / "Output/fw-ar-IF1-avtr12-corr/FeatureData.csv", + feature_data_file=nxtest.get_data_directory() / "Output/fw-ar-IF1-avtr12-corr/Feature_Data.csv", write_neighborlist_data=False, write_num_features_line=True ) diff --git a/wrapping/python/examples/pipelines/OrientationAnalysis/ComputeGBCD-GBPDMetricBased.py b/wrapping/python/examples/pipelines/OrientationAnalysis/ComputeGBCD-GBPDMetricBased.py index 6cd23a21e1..710b77e7bb 100644 --- a/wrapping/python/examples/pipelines/OrientationAnalysis/ComputeGBCD-GBPDMetricBased.py +++ b/wrapping/python/examples/pipelines/OrientationAnalysis/ComputeGBCD-GBPDMetricBased.py @@ -27,11 +27,11 @@ # Execute Filter with Parameters result = nx_filter.execute( data_structure=data_structure, - face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), + face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), feature_face_ids_array_name=("FeatureFaceId"), feature_face_labels_array_name=("FaceLabels"), feature_num_triangles_array_name=("NumTriangles"), - grain_boundary_attribute_matrix_name=("FaceFeatureData"), + grain_boundary_attribute_matrix_name=("Shared Feature Data"), randomize_features=False, input_triangle_geometry_path=nx.DataPath("TriangleDataContainer") ) @@ -52,14 +52,14 @@ feature_euler_angles_array_path=nx.DataPath("DataContainer/Cell Feature Data/AxisEulerAngles"), feature_phases_array_path=nx.DataPath("DataContainer/Cell Feature Data/Phases"), misorientation_rotation=[1.0, 1.0, 1.0, 17.9], - node_types_array_path=nx.DataPath("TriangleDataContainer/VertexData/NodeType"), + node_types_array_path=nx.DataPath("TriangleDataContainer/Vertex Data/NodeType"), num_sampl_pts=3000, phase_of_interest=1, save_relative_err=True, - surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceAreas"), - surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), - surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceNormals"), - surface_mesh_feature_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceFeatureData/FaceLabels"), + surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceAreas"), + surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), + surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceNormals"), + surface_mesh_feature_face_labels_array_path=nx.DataPath("TriangleDataContainer/Shared Feature Data/FaceLabels"), input_triangle_geometry_path=nx.DataPath("TriangleDataContainer") ) nxtest.check_filter_result(nx_filter, result) @@ -78,14 +78,14 @@ feature_euler_angles_array_path=nx.DataPath("DataContainer/Cell Feature Data/AxisEulerAngles"), feature_phases_array_path=nx.DataPath("DataContainer/Cell Feature Data/Phases"), limit_dist=7.0, - node_types_array_path=nx.DataPath("TriangleDataContainer/VertexData/NodeType"), + node_types_array_path=nx.DataPath("TriangleDataContainer/Vertex Data/NodeType"), num_sampl_pts=3000, phase_of_interest=1, save_relative_err=False, - surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceAreas"), - surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceLabels"), - surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/FaceData/FaceNormals"), - surface_mesh_feature_face_labels_array_path=nx.DataPath("TriangleDataContainer/FaceFeatureData/FaceLabels"), + surface_mesh_face_areas_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceAreas"), + surface_mesh_face_labels_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceLabels"), + surface_mesh_face_normals_array_path=nx.DataPath("TriangleDataContainer/Face Data/FaceNormals"), + surface_mesh_feature_face_labels_array_path=nx.DataPath("TriangleDataContainer/Shared Feature Data/FaceLabels"), input_triangle_geometry_path=nx.DataPath("TriangleDataContainer") ) nxtest.check_filter_result(nx_filter, result) diff --git a/wrapping/python/examples/pipelines/Simplnx/ResampleRectGridToImageGeom.py b/wrapping/python/examples/pipelines/Simplnx/ResampleRectGridToImageGeom.py index 7a5c251555..26fbbd58ac 100644 --- a/wrapping/python/examples/pipelines/Simplnx/ResampleRectGridToImageGeom.py +++ b/wrapping/python/examples/pipelines/Simplnx/ResampleRectGridToImageGeom.py @@ -81,7 +81,7 @@ number_comp=1, skip_line_count=0, # n_tuples: List[List[float]] = ..., - output_data_array_path=nx.DataPath("RectGridGeometry/CellData/ConfidenceIndex"), + output_data_array_path=nx.DataPath("RectGridGeometry/Cell Data/ConfidenceIndex"), scalar_type_index=nx.NumericType.float32 ) nxtest.check_filter_result(nx_filter, result) @@ -99,7 +99,7 @@ number_comp=1, skip_line_count=0, # n_tuples: List[List[float]] = ..., - output_data_array_path=nx.DataPath("RectGridGeometry/CellData/ImageQuality"), + output_data_array_path=nx.DataPath("RectGridGeometry/Cell Data/ImageQuality"), scalar_type_index=nx.NumericType.float32 ) nxtest.check_filter_result(nx_filter, result) @@ -118,7 +118,7 @@ number_comp=1, skip_line_count=0, # n_tuples: List[List[float]] = ..., - output_data_array_path=nx.DataPath("RectGridGeometry/CellData/SEM Signal"), + output_data_array_path=nx.DataPath("RectGridGeometry/Cell Data/SEM Signal"), scalar_type_index=nx.NumericType.float32 ) nxtest.check_filter_result(nx_filter, result) @@ -136,7 +136,7 @@ number_comp=1, skip_line_count=0, # n_tuples: List[List[float]] = ..., - output_data_array_path=nx.DataPath("RectGridGeometry/CellData/Fit"), + output_data_array_path=nx.DataPath("RectGridGeometry/Cell Data/Fit"), scalar_type_index=nx.NumericType.float32 ) nxtest.check_filter_result(nx_filter, result) @@ -155,7 +155,7 @@ number_comp=3, skip_line_count=0, # n_tuples: List[List[float]] = ..., - output_data_array_path=nx.DataPath("RectGridGeometry/CellData/EulerAngles"), + output_data_array_path=nx.DataPath("RectGridGeometry/Cell Data/EulerAngles"), scalar_type_index=nx.NumericType.float32 ) nxtest.check_filter_result(nx_filter, result) @@ -173,7 +173,7 @@ number_comp=1, skip_line_count=0, # n_tuples: List[List[float]] = ..., - output_data_array_path=nx.DataPath("RectGridGeometry/CellData/Phases"), + output_data_array_path=nx.DataPath("RectGridGeometry/Cell Data/Phases"), scalar_type_index=nx.NumericType.int32 ) nxtest.check_filter_result(nx_filter, result) @@ -189,12 +189,12 @@ image_geom_cell_attribute_matrix_name="Cell Data", input_image_geometry_path=nx.DataPath("Image Geometry"), rectilinear_grid_path=nx.DataPath("RectGridGeometry"), - input_data_array_paths=[nx.DataPath("RectGridGeometry/CellData/ConfidenceIndex"), - nx.DataPath("RectGridGeometry/CellData/EulerAngles"), - nx.DataPath("RectGridGeometry/CellData/Fit"), - nx.DataPath("RectGridGeometry/CellData/ImageQuality"), - nx.DataPath("RectGridGeometry/CellData/Phases"), - nx.DataPath("RectGridGeometry/CellData/SEM Signal")] + input_data_array_paths=[nx.DataPath("RectGridGeometry/Cell Data/ConfidenceIndex"), + nx.DataPath("RectGridGeometry/Cell Data/EulerAngles"), + nx.DataPath("RectGridGeometry/Cell Data/Fit"), + nx.DataPath("RectGridGeometry/Cell Data/ImageQuality"), + nx.DataPath("RectGridGeometry/Cell Data/Phases"), + nx.DataPath("RectGridGeometry/Cell Data/SEM Signal")] ) nxtest.check_filter_result(nx_filter, result) diff --git a/wrapping/python/plugins/ExamplePlugin/ExampleFilter1.py b/wrapping/python/plugins/ExamplePlugin/ExampleFilter1.py index 6b80a9158b..cca944f0d7 100644 --- a/wrapping/python/plugins/ExamplePlugin/ExampleFilter1.py +++ b/wrapping/python/plugins/ExamplePlugin/ExampleFilter1.py @@ -124,11 +124,11 @@ def parameters(self) -> nx.Parameters: params.insert(nx.CreateColorMapParameter(ExampleFilter1.PARAM16_KEY, "Select Preset...", "Select a preset color scheme to apply to the created array", "Rainbow Desaturated")) dataset1 = nx.ReadHDF5DatasetParameter.DatasetImportInfo() - dataset1.dataset_path = "/DataStructure/DataContainer/CellData/Confidence Index" + dataset1.dataset_path = "/DataStructure/DataContainer/Cell Data/Confidence Index" dataset1.tuple_dims = "117,201,189" dataset1.component_dims = "1" dataset2 = nx.ReadHDF5DatasetParameter.DatasetImportInfo() - dataset2.dataset_path = "/DataStructure/DataContainer/CellData/EulerAngles" + dataset2.dataset_path = "/DataStructure/DataContainer/Cell Data/EulerAngles" dataset2.tuple_dims = "117,201,189" dataset2.component_dims = "3" import_hdf5_param = nx.ReadHDF5DatasetParameter.ValueType()