streamlit_app.py

import streamlit as st
import os

# --- PAGE CONFIG ---
st.set_page_config(
    page_title="Aurora PK/PD",
    page_icon=":sparkles:",
    initial_sidebar_state="auto",
    layout="wide",
)


# --- PAGE SETUP ---
home_page = st.Page("pages/home.py", title="Home", icon=":material/house:")
upload_page = st.Page(
    "pages/compartmental/upload.py", title="Upload Existing Model", icon=":material/upload:"
)
build_page = st.Page(
    "pages/compartmental/build.py", title="Build New Model", icon=":material/build:"
)
edit_page = st.Page("pages/compartmental/edit.py", title="Edit Model Code", icon=":material/code:")
viz_page = st.Page(
    "pages/compartmental/visualize.py", title="Visualize Networks", icon=":material/hub:"
)
simulate_page = st.Page(
    "pages/compartmental/simulate.py", title="Simulate and View Outputs", icon=":material/laps:"
)
fit_page = st.Page(
    "pages/compartmental/fit.py", title="🔜Calibrate Model to Data", icon=":material/model_training:"
)
analyze_page = st.Page(
    "pages/compartmental/analyze.py", title="🔜Analyze Model", icon=":material/analytics:"
)
nca_page = st.Page(
    "pages/noncompartmental/nca.py", title="🔜NCA", icon=":material/query_stats:"
)
pdfit_page = st.Page(
    "pages/pdanalysis/exposureresponse.py",
    title="Exposure-Response",
    icon=":material/elevation:",
)
htprolif_page = st.Page(
    "pages/external/htproliferation.py",
    title="Thunor➡️HT Cell Proliferation",
    icon=":material/bolt:",
)
drugsynergy_page = st.Page(
    "pages/external/drugsynergy.py",
    title="MuSyC➡️Drug Combo Synergy",
    icon=":material/music_note:",
)
support_info_page = st.Page(
    "pages/support/info.py", title="Info", icon=":material/info:"
)




# --- NAVIGATION SETUP [WITH SECTIONS]---
pg = st.navigation(
    {
        " ": [home_page],
        "Compartmental PK/PD": [
            upload_page,
            build_page,
            edit_page,
            viz_page,
            simulate_page,
            fit_page,
            analyze_page,
        ],
        "Non-compartmental PK": [nca_page],
        "PD Analysis": [pdfit_page],
        "Support": [support_info_page],
        "External Tools": [htprolif_page, drugsynergy_page]
    }
)

# --- SHARED ON ALL PAGES ---
st.logo(
    "assets/aurora-pkpd-logo-wide.png",
    link=None,
    icon_image="assets/aurora-pkpd-logo-2.png",
)
st.sidebar.markdown("Aurora PK/PD v0.3.0-alpha")
st.sidebar.markdown("[![DOI](https://zenodo.org/badge/823310494.svg)](https://zenodo.org/doi/10.5281/zenodo.13138374)")
st.sidebar.markdown("A Streamlit web app by [@blakeaw](https://github.com/blakeaw)")
st.sidebar.markdown("[![ko-fi](https://ko-fi.com/img/githubbutton_sm.svg)](https://ko-fi.com/J3J4ZUCVU)")
st.sidebar.markdown("[Borealis BioModeling](https://github.com/Borealis-BioModeling)")


# --- RUN NAVIGATION ---
pg.run()