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31 Open 133 Closed
31 Open 133 Closed
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Issues list

Add Google Colab links to readme enhancement New feature or request
#293 opened Mar 5, 2025 by ayush9pandey
Generate list of available mechanisms, components, and mixtures in user-friendly format enhancement New feature or request
#292 opened Feb 27, 2025 by ayush9pandey
Option to show compartments with CRN pretty print enhancement New feature or request
#291 opened Feb 24, 2025 by ayush9pandey
Option to suppress the warning about parameter units
#290 opened Feb 24, 2025 by ayush9pandey
Compartments in BioCRNpyler: updates required
#288 opened Feb 12, 2025 by ayush9pandey
A changed compartment of species is not reflected through when compiling the CRN
#287 opened Jan 30, 2025 by zjuradoq
How to modify k_forward after model built?
#283 opened Sep 26, 2024 by wupeng1998
2
Seaborn dependency?
#282 opened Aug 19, 2024 by ayush9pandey
Colab: 'biocrnpyler' is not defined, 'CRN.simulate_with_bioscrape_via_sbml()' returns 'NoneType' object
#280 opened Jul 5, 2024 by HengyuWangWHY
2
Fix coverage upload to codecov bug Something isn't working
#279 opened Jun 20, 2024 by ayush9pandey
@ayush9pandey
GeneralPropensity saves parameter names differently than other propensities
#274 opened Dec 29, 2022 by WilliamIX
Species representation adds "_" between characters in species.attributes
#273 opened Dec 13, 2022 by WilliamIX
Degradation spelled incorrectly in function names
#271 opened Jun 10, 2022 by ayush9pandey
Bug in deterministic model
#270 opened May 5, 2022 by bad-ants-fleet
SBML file does not have initial conditions set correctly
#268 opened Mar 31, 2022 by ayush9pandey
Adding Attributes to a DNA_construct results in a warning
#263 opened Dec 22, 2021 by WilliamIX
DNA_construct equality compares __repr__ instead of object instance
#237 opened May 14, 2021 by dr3y
_create_global_parameter in sbmlutil does not do SBML uniqueness checks
#236 opened May 14, 2021 by ayush9pandey
1
Example Notebook 2: Example 5 Typo
#233 opened Feb 23, 2021 by WilliamIX
@WilliamIX
DNAAssembly with OneStepGeneExpression breaks when used with a default Mixture
#230 opened Feb 13, 2021 by sclamons
3
Global Mechanism feedback
#228 opened Feb 13, 2021 by WilliamIX
"degradation" is misspelled in the names of two global mechanisms. good first issue Good for newcomers
#226 opened Feb 12, 2021 by sclamons
5
Fancy CRN and ODE Text Output
#223 opened Jan 27, 2021 by WilliamIX Low Priority
remaining issues with Sphinx
#218 opened Dec 19, 2020 by zoltuz
1 of 5 tasks
Low Priority
convenient way to handle parameters during reaction building
#213 opened Dec 18, 2020 by zoltuz Low Priority
1
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