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C2SM · Feb 8, 2024 · cda2574 · cda2574
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diff --git a/pr-preview/pr-62/.buildinfo b/pr-preview/pr-62/.buildinfo
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+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 1aeaaa61ffdae84808dc072253a78bd0
+tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/pr-preview/pr-62/.doctrees/code-structure.doctree b/pr-preview/pr-62/.doctrees/code-structure.doctree
diff --git a/pr-preview/pr-62/.doctrees/config.doctree b/pr-preview/pr-62/.doctrees/config.doctree
diff --git a/pr-preview/pr-62/.doctrees/environment.doctree b/pr-preview/pr-62/.doctrees/environment.doctree
diff --git a/pr-preview/pr-62/.doctrees/environment.pickle b/pr-preview/pr-62/.doctrees/environment.pickle
diff --git a/pr-preview/pr-62/.doctrees/features.doctree b/pr-preview/pr-62/.doctrees/features.doctree
diff --git a/pr-preview/pr-62/.doctrees/functions.doctree b/pr-preview/pr-62/.doctrees/functions.doctree
diff --git a/pr-preview/pr-62/.doctrees/howtorun.doctree b/pr-preview/pr-62/.doctrees/howtorun.doctree
diff --git a/pr-preview/pr-62/.doctrees/index.doctree b/pr-preview/pr-62/.doctrees/index.doctree
diff --git a/pr-preview/pr-62/.doctrees/jobs.doctree b/pr-preview/pr-62/.doctrees/jobs.doctree
diff --git a/pr-preview/pr-62/.doctrees/namelists.doctree b/pr-preview/pr-62/.doctrees/namelists.doctree
diff --git a/pr-preview/pr-62/_images/processing_chain_workflow_icon_art.png b/pr-preview/pr-62/_images/processing_chain_workflow_icon_art.png
diff --git a/pr-preview/pr-62/_modules/index.html b/pr-preview/pr-62/_modules/index.html
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+<!DOCTYPE html>
+<html class="writer-html5" lang="en">
+<head>
+  <meta charset="utf-8" />
+  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+  <title>Overview: module code &mdash; Processing Chain v3.1 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
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+      <link rel="stylesheet" type="text/css" href="../_static/custom.css?v=09616d5f" />
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+
+    <link rel="shortcut icon" href="../_static/processing-chain-favicon.ico"/>
+  <!--[if lt IE 9]>
+    <script src="../_static/js/html5shiv.min.js"></script>
+  <![endif]-->
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+        <script src="../_static/jquery.js?v=5d32c60e"></script>
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+        <script src="../_static/copybutton.js?v=a5fa425f"></script>
+    <script src="../_static/js/theme.js"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" /> 
+</head>
+
+<body class="wy-body-for-nav"> 
+  <div class="wy-grid-for-nav">
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search"  style="background: #5d6d7e" >
+
+
+
+          <a href="../index.html">
+
+              <img src="../_static/processing-chain-logo-small.png" class="logo" alt="Logo"/>
+          </a>
+              <div class="version">
+                v3.1
+              </div>
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+        </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+              <p class="caption" role="heading"><span class="caption-text">Getting Started</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../features.html">Feature Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../environment.html">Conda Environment</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../environment.html#install-miniconda">1. Install Miniconda</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../environment.html#create-the-conda-environment">2. Create the Conda Environment</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../environment.html#store-user-specific-data">3. Store user-specific data</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../howtorun.html">How to Run</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../howtorun.html#starting-the-chain">Starting the Chain</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../howtorun.html#what-it-does">What it Does</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../howtorun.html#test-cases">Test Cases</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../howtorun.html#directory-structure">Directory Structure</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">Configuration</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../code-structure.html">Code Structure</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../config.html">Configuration File</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../config.html#configuration-variables">Configuration Variables</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../config.html#variables-to-set-in-config-yaml">Variables to Set in <code class="docutils literal notranslate"><span class="pre">config.yaml</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../namelists.html">Namelist and Runscript Templates</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../namelists.html#jobs.tools.write_int2lm_input_art.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.write_int2lm_input_art.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../namelists.html#jobs.tools.write_cosmo_input_ghg.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.write_cosmo_input_ghg.main()</span></code></a></li>
+</ul>
+</li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">Jobs &amp; Workflows</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../jobs.html">Overview</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../jobs.html#adding-new-jobs">Adding New Jobs</a></li>
+</ul>
+<p class="caption" role="heading"><span class="caption-text">API</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../functions.html">Jobs</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.biofluxes.main"><code class="docutils literal notranslate"><span class="pre">jobs.biofluxes.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.check_output.main"><code class="docutils literal notranslate"><span class="pre">jobs.check_output.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.cosmo.main"><code class="docutils literal notranslate"><span class="pre">jobs.cosmo.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.emissions.main"><code class="docutils literal notranslate"><span class="pre">jobs.emissions.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.icon.main"><code class="docutils literal notranslate"><span class="pre">jobs.icon.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.icontools.main"><code class="docutils literal notranslate"><span class="pre">jobs.icontools.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.int2lm.main"><code class="docutils literal notranslate"><span class="pre">jobs.int2lm.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.obs_nudging.main"><code class="docutils literal notranslate"><span class="pre">jobs.obs_nudging.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.octe.main"><code class="docutils literal notranslate"><span class="pre">jobs.octe.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.oem.main"><code class="docutils literal notranslate"><span class="pre">jobs.oem.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.online_vprm.main"><code class="docutils literal notranslate"><span class="pre">jobs.online_vprm.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.photo_rate.main"><code class="docutils literal notranslate"><span class="pre">jobs.photo_rate.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.post_cosmo.main"><code class="docutils literal notranslate"><span class="pre">jobs.post_cosmo.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.post_int2lm.main"><code class="docutils literal notranslate"><span class="pre">jobs.post_int2lm.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.prepare_cosmo.main"><code class="docutils literal notranslate"><span class="pre">jobs.prepare_cosmo.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.prepare_icon.main"><code class="docutils literal notranslate"><span class="pre">jobs.prepare_icon.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.reduce_output.main"><code class="docutils literal notranslate"><span class="pre">jobs.reduce_output.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.verify_chain.main"><code class="docutils literal notranslate"><span class="pre">jobs.verify_chain.main()</span></code></a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../functions.html#tools">Tools</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.cams4int2cosmo.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.cams4int2cosmo.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.check_model.check_model"><code class="docutils literal notranslate"><span class="pre">jobs.tools.check_model.check_model()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.comp_nc.datasets_equal"><code class="docutils literal notranslate"><span class="pre">jobs.tools.comp_nc.datasets_equal()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.ctnoaa4int2cosmo.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.ctnoaa4int2cosmo.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.mozart2int2lm.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.mozart2int2lm.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.reduce_output_start_end.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.reduce_output_start_end.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.string2char.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.string2char.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.vprmsplit.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.vprmsplit.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.write_cosmo_input_ghg.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.write_cosmo_input_ghg.main()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html#jobs.tools.write_int2lm_input_art.main"><code class="docutils literal notranslate"><span class="pre">jobs.tools.write_int2lm_input_art.main()</span></code></a></li>
+</ul>
+</li>
+</ul>
+
+        </div>
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu"  style="background: #5d6d7e" >
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="../index.html">Processing Chain</a>
+      </nav>
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+        <div class="rst-content">
+          <div role="navigation" aria-label="Page navigation">
+  <ul class="wy-breadcrumbs">
+      <li><a href="../index.html" class="icon icon-home" aria-label="Home"></a></li>
+      <li class="breadcrumb-item active">Overview: module code</li>
+      <li class="wy-breadcrumbs-aside">
+      </li>
+  </ul>
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+
+  <h1>All modules for which code is available</h1>
+<ul><li><a href="jobs/biofluxes.html">jobs.biofluxes</a></li>
+<li><a href="jobs/check_output.html">jobs.check_output</a></li>
+<li><a href="jobs/cosmo.html">jobs.cosmo</a></li>
+<li><a href="jobs/emissions.html">jobs.emissions</a></li>
+<li><a href="jobs/icon.html">jobs.icon</a></li>
+<li><a href="jobs/icontools.html">jobs.icontools</a></li>
+<li><a href="jobs/int2lm.html">jobs.int2lm</a></li>
+<li><a href="jobs/obs_nudging.html">jobs.obs_nudging</a></li>
+<li><a href="jobs/octe.html">jobs.octe</a></li>
+<li><a href="jobs/oem.html">jobs.oem</a></li>
+<li><a href="jobs/online_vprm.html">jobs.online_vprm</a></li>
+<li><a href="jobs/photo_rate.html">jobs.photo_rate</a></li>
+<li><a href="jobs/post_cosmo.html">jobs.post_cosmo</a></li>
+<li><a href="jobs/post_int2lm.html">jobs.post_int2lm</a></li>
+<li><a href="jobs/prepare_cosmo.html">jobs.prepare_cosmo</a></li>
+<li><a href="jobs/prepare_icon.html">jobs.prepare_icon</a></li>
+<li><a href="jobs/reduce_output.html">jobs.reduce_output</a></li>
+<li><a href="jobs/tools/cams4int2cosmo.html">jobs.tools.cams4int2cosmo</a></li>
+<li><a href="jobs/tools/check_model.html">jobs.tools.check_model</a></li>
+<li><a href="jobs/tools/comp_nc.html">jobs.tools.comp_nc</a></li>
+<li><a href="jobs/tools/ctnoaa4int2cosmo.html">jobs.tools.ctnoaa4int2cosmo</a></li>
+<li><a href="jobs/tools/mozart2int2lm.html">jobs.tools.mozart2int2lm</a></li>
+<li><a href="jobs/tools/reduce_output_start_end.html">jobs.tools.reduce_output_start_end</a></li>
+<li><a href="jobs/tools/string2char.html">jobs.tools.string2char</a></li>
+<li><a href="jobs/tools/vprmsplit.html">jobs.tools.vprmsplit</a></li>
+<li><a href="jobs/tools/write_cosmo_input_ghg.html">jobs.tools.write_cosmo_input_ghg</a></li>
+<li><a href="jobs/tools/write_int2lm_input_art.html">jobs.tools.write_int2lm_input_art</a></li>
+<li><a href="jobs/verify_chain.html">jobs.verify_chain</a></li>
+</ul>
+
+           </div>
+          </div>
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+    <p>&#169; Copyright 2018-2024, C2SM.</p>
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