Fetched main to spiros-dev | Fixed pre-commit

NiChart_DLMUSE/SegmentImage.py

@@ -2,8 +2,6 @@
 import os
 import shutil
 from typing import Any
-import DLMUSE 
-import DLICV
 
 
 def run_dlicv(

NiChart_DLMUSE/__init__.py

@@ -1 +1 @@
-from .dlmuse_pipeline import run_pipeline, run_dlicv, run_dlmuse
+from .dlmuse_pipeline import run_dlicv, run_dlmuse, run_pipeline

NiChart_DLMUSE/dlmuse_pipeline.py

@@ -1,5 +1,6 @@
 import logging
 import os
+from typing import Any
 
 import pkg_resources  # type: ignore
 
@@ -39,10 +40,10 @@ def run_pipeline(
     in_data: str,
     out_dir: str,
     device: str,
-    dlmuse_extra_args: str = '',
-    dlicv_extra_args: str = '',
+    dlmuse_extra_args: str = "",
+    dlicv_extra_args: str = "",
     sub_fldr: int = 1,
-    progress_bar = None,
+    progress_bar: Any = None,
 ) -> None:
     """
     NiChart pipeline

NiChart_DLMUSE/utils.py

@@ -65,7 +65,9 @@ def remove_common_suffix(list_files: list) -> list:
 
     bnames = list_files
     if len(list_files) == 1:
-        if list_files[0].endswith('_T1'): # If there is a single image with suffix _T1, remove it
+        if list_files[0].endswith(
+            "_T1"
+        ):  # If there is a single image with suffix _T1, remove it
             bnames = [x[0:-3] for x in bnames]
         return bnames