fix: install ELBOW manually

CCBR · Apr 17, 2024 · f093244 · f093244
1 parent 7ff6150
commit f093244
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/docker/carlisle_r/Dockerfile b/docker/carlisle_r/Dockerfile
@@ -16,6 +16,9 @@ RUN mamba install \
     --file /data2/packages.txt
 ENV PATH="/opt2/conda/bin:$PATH"
 ENV R_LIBS_USER=/opt2/conda/lib/R/library/
+# install ELBOW manually, fails with mamba
+RUN wget https://bioconductor.riken.jp/packages/3.4/bioc/src/contrib/ELBOW_1.10.0.tar.gz && \
+    R -e 'install.packages("ELBOW_1.10.0.tar.gz", repos = NULL, type="source", INSTALL_opts = "--no-lock")'
 
 # Save Dockerfile in the docker
 COPY Dockerfile /opt2/Dockerfile_${REPONAME}.${BUILD_TAG}