diff --git a/workflow/Snakefile b/workflow/Snakefile index 3ba0135..92dd60a 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -173,8 +173,8 @@ elif not paired_end: # FastQ Screen expand(join(workpath,"FQscreen","{name}.R1.trim_screen.txt"),name=samples), expand(join(workpath,"FQscreen","{name}.R1.trim_screen.png"),name=samples), - expand(join(workpath,"FQscreen2","{name}.R1.trim_screen.txt"),name=samples), - expand(join(workpath,"FQscreen2","{name}.R1.trim_screen.png"),name=samples), + expand(join(workpath,"FQscreen2","{name}.R1_2.trim_screen.txt"),name=samples), + expand(join(workpath,"FQscreen2","{name}.R1_2.trim_screen.png"),name=samples), # Kraken + Krona expand(join(workpath,kraken_dir,"{name}.trim.kraken_bacteria.taxa.txt"),name=samples),