fq_to_replicate_composition_info.py

#!/usr/bin/env python
# coding: utf-8

"""
Created on Feb. 4 2022

@author: James.Pettengill
"""

import sys

# print(sys.argv[0])
# print(len(sys.argv))
infile = sys.argv[1]
print(infile)

var_1 = infile.split("_")[0]
prop_1 = infile.split("_")[1]
var_2 = infile.split("_")[2]
prop_2 = infile.split("_")[3]
var_3 = infile.split("_")[4]
prop_3 = infile.split("_")[5]
var_4 = infile.split("_")[6]
prop_4 = infile.split("_")[7]
var_5 = infile.split("_")[8]
prop_5 = infile.split("_")[9].replace("art", "")

with open(infile.replace("art_out1.fq", "composition_info.tsv"), "w") as outfile:
    outfile.write(
        var_1
        + "\t"
        + prop_1
        + "\n"
        + var_2
        + "\t"
        + prop_2
        + "\n"
        + var_3
        + "\t"
        + prop_3
        + "\n"
        + var_4
        + "\t"
        + prop_4
        + "\n"
        + var_5
        + "\t"
        + prop_5
    )