From 1da295e32c441684fc8d44146bc2549d7ffb6b0e Mon Sep 17 00:00:00 2001
From: Radhakrishna Sanka <rkrishnasanka@gmail.com>
Date: Mon, 23 Oct 2023 09:32:53 +0000
Subject: [PATCH] * Updated the parchmint dependency to 0.3.5 to ensure that
 valve mapping fixes get propagated.

---
 poetry.lock    | 67 +++-----------------------------------------------
 pyproject.toml |  4 +--
 2 files changed, 6 insertions(+), 65 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 1207319..b4848b7 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
 version = "0.7.13"
 description = "A configurable sidebar-enabled Sphinx theme"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -16,7 +15,6 @@ files = [
 name = "antlr4-python3-runtime"
 version = "4.12.0"
 description = "ANTLR 4.12.0 runtime for Python 3"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -28,7 +26,6 @@ files = [
 name = "argparse"
 version = "1.4.0"
 description = "Python command-line parsing library"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -40,7 +37,6 @@ files = [
 name = "attrs"
 version = "22.2.0"
 description = "Classes Without Boilerplate"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -59,7 +55,6 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy
 name = "babel"
 version = "2.12.1"
 description = "Internationalization utilities"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -74,7 +69,6 @@ pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""}
 name = "black"
 version = "22.3.0"
 description = "The uncompromising code formatter."
-category = "dev"
 optional = false
 python-versions = ">=3.6.2"
 files = [
@@ -121,7 +115,6 @@ uvloop = ["uvloop (>=0.15.2)"]
 name = "certifi"
 version = "2022.12.7"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -133,7 +126,6 @@ files = [
 name = "charset-normalizer"
 version = "3.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "dev"
 optional = false
 python-versions = ">=3.7.0"
 files = [
@@ -218,7 +210,6 @@ files = [
 name = "click"
 version = "8.1.3"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -233,7 +224,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -245,7 +235,6 @@ files = [
 name = "docutils"
 version = "0.16"
 description = "Docutils -- Python Documentation Utilities"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -257,7 +246,6 @@ files = [
 name = "exceptiongroup"
 version = "1.1.1"
 description = "Backport of PEP 654 (exception groups)"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -272,7 +260,6 @@ test = ["pytest (>=6)"]
 name = "flake8"
 version = "3.9.2"
 description = "the modular source code checker: pep8 pyflakes and co"
-category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 files = [
@@ -289,7 +276,6 @@ pyflakes = ">=2.3.0,<2.4.0"
 name = "idna"
 version = "3.4"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -301,7 +287,6 @@ files = [
 name = "imagesize"
 version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -313,7 +298,6 @@ files = [
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -325,7 +309,6 @@ files = [
 name = "install"
 version = "1.3.5"
 description = "Install packages from within code"
-category = "main"
 optional = false
 python-versions = ">=2.7, >=3.5"
 files = [
@@ -337,7 +320,6 @@ files = [
 name = "isort"
 version = "5.12.0"
 description = "A Python utility / library to sort Python imports."
-category = "dev"
 optional = false
 python-versions = ">=3.8.0"
 files = [
@@ -355,7 +337,6 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"]
 name = "jinja2"
 version = "3.1.2"
 description = "A very fast and expressive template engine."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -373,7 +354,6 @@ i18n = ["Babel (>=2.7)"]
 name = "jsonschema"
 version = "3.2.0"
 description = "An implementation of JSON Schema validation for Python"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -395,7 +375,6 @@ format-nongpl = ["idna", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-va
 name = "markupsafe"
 version = "2.1.2"
 description = "Safely add untrusted strings to HTML/XML markup."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -455,7 +434,6 @@ files = [
 name = "mccabe"
 version = "0.6.1"
 description = "McCabe checker, plugin for flake8"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -467,7 +445,6 @@ files = [
 name = "mypy"
 version = "1.1.1"
 description = "Optional static typing for Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -514,7 +491,6 @@ reports = ["lxml"]
 name = "mypy-extensions"
 version = "1.0.0"
 description = "Type system extensions for programs checked with the mypy type checker."
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -526,7 +502,6 @@ files = [
 name = "networkx"
 version = "3.0"
 description = "Python package for creating and manipulating graphs and networks"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -545,7 +520,6 @@ test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
 name = "numpy"
 version = "1.24.4"
 description = "Fundamental package for array computing in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -583,7 +557,6 @@ files = [
 name = "packaging"
 version = "23.0"
 description = "Core utilities for Python packages"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -593,14 +566,13 @@ files = [
 
 [[package]]
 name = "parchmint"
-version = "0.3.4"
+version = "0.3.5"
 description = "Parchmint is data interchange standard for representing microfluidic designs. Check out https://parchmint.org for more information."
-category = "main"
 optional = false
 python-versions = ">=3.8,<3.11"
 files = [
-    {file = "parchmint-0.3.4-py3-none-any.whl", hash = "sha256:70cc744cd4549291d6e687ad703587e1764da9e26881aa09688d5d617a8d9333"},
-    {file = "parchmint-0.3.4.tar.gz", hash = "sha256:d307ba4d16801eaf37f285655d74f0269ac70562277c497eb7ac82cbf83ca42d"},
+    {file = "parchmint-0.3.5-py3-none-any.whl", hash = "sha256:6ed725aa604d74885e7b4921892e61c5ad88dd795b71412f70677860d6fc8d19"},
+    {file = "parchmint-0.3.5.tar.gz", hash = "sha256:306b2c63fabbc98b1bdcb3b13e4ad4b9a150f6d36148b62ebd1b57f4e8e3a223"},
 ]
 
 [package.dependencies]
@@ -614,7 +586,6 @@ tabulate = ">=0.8.9,<0.9.0"
 name = "pathspec"
 version = "0.11.0"
 description = "Utility library for gitignore style pattern matching of file paths."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -626,7 +597,6 @@ files = [
 name = "pip"
 version = "23.0.1"
 description = "The PyPA recommended tool for installing Python packages."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -638,7 +608,6 @@ files = [
 name = "platformdirs"
 version = "3.1.1"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -654,7 +623,6 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest (>=7.2.1)", "pytes
 name = "pluggy"
 version = "1.0.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -670,7 +638,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "pockets"
 version = "0.9.1"
 description = "A collection of helpful Python tools!"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -685,7 +652,6 @@ six = ">=1.5.2"
 name = "pycodestyle"
 version = "2.7.0"
 description = "Python style guide checker"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -697,7 +663,6 @@ files = [
 name = "pyfiglet"
 version = "0.8.post1"
 description = "Pure-python FIGlet implementation"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -709,7 +674,6 @@ files = [
 name = "pyflakes"
 version = "2.3.1"
 description = "passive checker of Python programs"
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -721,7 +685,6 @@ files = [
 name = "pygments"
 version = "2.14.0"
 description = "Pygments is a syntax highlighting package written in Python."
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -736,7 +699,6 @@ plugins = ["importlib-metadata"]
 name = "pygraphviz"
 version = "1.10"
 description = "Python interface to Graphviz"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -747,7 +709,6 @@ files = [
 name = "pyrsistent"
 version = "0.19.3"
 description = "Persistent/Functional/Immutable data structures"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -784,7 +745,6 @@ files = [
 name = "pytest"
 version = "7.2.2"
 description = "pytest: simple powerful testing with Python"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -808,7 +768,6 @@ testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.
 name = "pytz"
 version = "2022.7.1"
 description = "World timezone definitions, modern and historical"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -820,7 +779,6 @@ files = [
 name = "requests"
 version = "2.28.2"
 description = "Python HTTP for Humans."
-category = "dev"
 optional = false
 python-versions = ">=3.7, <4"
 files = [
@@ -842,7 +800,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "rope"
 version = "0.18.0"
 description = "a python refactoring library..."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -856,7 +813,6 @@ dev = ["pytest"]
 name = "setuptools"
 version = "67.6.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -873,7 +829,6 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -885,7 +840,6 @@ files = [
 name = "snowballstemmer"
 version = "2.2.0"
 description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -897,7 +851,6 @@ files = [
 name = "sphinx"
 version = "3.5.4"
 description = "Python documentation generator"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -933,7 +886,6 @@ test = ["cython", "html5lib", "pytest", "pytest-cov", "typed-ast"]
 name = "sphinx-rtd-theme"
 version = "0.5.2"
 description = "Read the Docs theme for Sphinx"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -952,7 +904,6 @@ dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client"]
 name = "sphinxcontrib-applehelp"
 version = "1.0.4"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -968,7 +919,6 @@ test = ["pytest"]
 name = "sphinxcontrib-devhelp"
 version = "1.0.2"
 description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document."
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -984,7 +934,6 @@ test = ["pytest"]
 name = "sphinxcontrib-htmlhelp"
 version = "2.0.1"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
-category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1000,7 +949,6 @@ test = ["html5lib", "pytest"]
 name = "sphinxcontrib-jsmath"
 version = "1.0.1"
 description = "A sphinx extension which renders display math in HTML via JavaScript"
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1015,7 +963,6 @@ test = ["flake8", "mypy", "pytest"]
 name = "sphinxcontrib-napoleon"
 version = "0.7"
 description = "Sphinx \"napoleon\" extension."
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -1031,7 +978,6 @@ six = ">=1.5.2"
 name = "sphinxcontrib-qthelp"
 version = "1.0.3"
 description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document."
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1047,7 +993,6 @@ test = ["pytest"]
 name = "sphinxcontrib-serializinghtml"
 version = "1.1.5"
 description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)."
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1063,7 +1008,6 @@ test = ["pytest"]
 name = "tabulate"
 version = "0.8.10"
 description = "Pretty-print tabular data"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1078,7 +1022,6 @@ widechars = ["wcwidth"]
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1090,7 +1033,6 @@ files = [
 name = "typing-extensions"
 version = "4.5.0"
 description = "Backported and Experimental Type Hints for Python 3.7+"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1102,7 +1044,6 @@ files = [
 name = "urllib3"
 version = "1.26.15"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 files = [
diff --git a/pyproject.toml b/pyproject.toml
index c782d34..3b949fa 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pymint"
-version = "0.3.2"
+version = "0.3.3"
 description = "MINT is a human readable language to describe Microfluidic Hardware Netlists. MINT is the name of the Microfluidic Netlist language used to describe microfluidic devices for Fluigi to place and route. Mint is a flavor of (MHDL) Microfluidic Hardware Description Language that can be used to represent Microfluidic Circuits."
 authors = ["Radhakrishna Sanka <rkrishnasanka@gmail.com>"]
 license = "BSD-3-Clause"
@@ -15,7 +15,7 @@ networkx = "^3.0"
 pygraphviz = "^1.9"
 pyfiglet = "^0.8.post1"
 click = "^8.1.3"
-parchmint = "^0.3.4"
+parchmint = "^0.3.5"
 
 [tool.poetry.dev-dependencies]
 mypy = "^1.1.1"