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Some error was reported by the same command #950

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YIGUIz opened this issue Aug 5, 2024 · 0 comments
Open

Some error was reported by the same command #950

YIGUIz opened this issue Aug 5, 2024 · 0 comments

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@YIGUIz
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YIGUIz commented Aug 5, 2024

Hi,

[bulk mode] salmon 1.10.3
the error was reported in partial jobs when I used salmon to quantify the LR-RNA-seq data (It works normally on some samples).

singularity exec /public/home/b20223040336/Workspace/long_read_rna/02code/singularity_images/salmon:1.10.3--h6dccd9a_2 salmon quant --ont -p 10 -t /public/home/b20223040336/Workspace/long_read_rna/01data/references/GCF_002263795.3_ARS-UCD2.0_rna.fna -l U -a mammary.cistern_4_tran.all.bam -o /public/home/b20223040336/Workspace/long_read_rna/03Results/mammary.cistern/LR/mammary.cistern_4/02_expression/UCD_based

image

I don't know how to solve this problem. I tried to install salmon using different methods, But it still doesn't work.

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