The RNA-seq data comes from brain samples (CNS) of mouse embryos at day 14 and day 18, done in 2 bioreplicates (1% of the original reads randomly sampled).
The following mouse references are used:
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mm9 genome assembly
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Ensembl v.65 gene annotation ~ long genes only
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Note
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A cheatsheet with basic Linux and Cluster commands is available here. |