Topological analysis of drosophila neurons

Setup

Create a virtual environment, activate it and install the PIP requirements.

python -m venv venv
source venv/bin/activate
pip install -r requirements.txt

To execute the entire pipeline, do:

python __init__.py

This will download all necessary assets, do the preprocessing and compute the best NN.

To compute the preprocessing of the input images, do:

python preprocessing.py

To work directly on the model:

python model.py

This will download the input folder (if needed), and compute the dataset in output/dataset.csv.