Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #17

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Run time

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Job	Run time
test-R-notebooks (PM1)	12m 32s
test-R-notebooks (PM2)	16m 33s
test-R-notebooks (PM3)	16m 15s
test-R-notebooks (PM4)	16m 33s
test-R-notebooks (PM5)	14m 19s
test-R-notebooks (CM1)	11m 12s
test-R-notebooks (CM2)	7m 15s
test-R-notebooks (CM3)	16m 32s
test-R-notebooks (AC1)	11m 8s
test-R-notebooks (AC2)	16m 33s
test-R-notebooks (T)	16m 30s
	2h 35m 22s