From 345979b9f04801354e1b70fde1b6fdfaaa7344a3 Mon Sep 17 00:00:00 2001
From: vsyrgkanis <bsyrganis@gmail.com>
Date: Sun, 21 Jul 2024 23:30:34 -0700
Subject: [PATCH] Testing stripping

---
 .github/workflows/strip-python-notebooks.yml | 20 +++++++++++++-----
 PM1/python-linear-model-overfitting.ipynb    | 22 +++++++++++++++++---
 PM1/r-linear-model-overfitting.irnb          |  4 +++-
 3 files changed, 37 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/strip-python-notebooks.yml b/.github/workflows/strip-python-notebooks.yml
index cc9c63cb..b50100ef 100644
--- a/.github/workflows/strip-python-notebooks.yml
+++ b/.github/workflows/strip-python-notebooks.yml
@@ -1,14 +1,14 @@
-name: Strip Python Jupyter Notebooks from Outputs
+name: Strip Python and R Notebooks from Outputs
 
 on:
   push:
 
 concurrency:
-  group: strip-python-notebooks-${{ github.ref }}
+  group: strip-notebooks-${{ github.ref }}
   cancel-in-progress: true
 
 jobs:
-  strip-python-notebooks:
+  strip-notebooks:
     runs-on: ubuntu-latest
 
     steps:
@@ -43,6 +43,16 @@ jobs:
                     nbstripout "$notebook"
                 fi
             done
+            for notebook in "$dir"/*.irnb; do
+                # Check if there are any .irnb files
+                if [ -e "$notebook" ]; then                    
+                    echo "Stripping output from notebook: $notebook"
+                    ipynb_notebook="${notebook%.irnb}.ipynb"
+                    mv "$notebook" "$ipynb_notebook"
+                    nbstripout "$ipynb_notebook"
+                    mv "$ipynb_notebook" "$notebook"
+                fi
+            done
         else
             echo "Directory $dir does not exist."
         fi
@@ -56,7 +66,7 @@ jobs:
             # Check if directory exists
             if [ -d "$dir" ]; then
                 echo "Processing directory: $dir"
-                if git diff --quiet "$dir"/*.ipynb; then
+                if git diff --quiet "$dir"/*.ipynb "$dir"/*.irnb; then
                     echo "changed=true" >> $GITHUB_OUTPUT
                     break 1
                 fi
@@ -75,7 +85,7 @@ jobs:
             # Check if directory exists
             if [ -d "$dir" ]; then
                 echo "Adding changed files from directory: $dir"
-                git add "$dir"/*.ipynb
+                git add "$dir"/*.ipynb "$dir"/*.irnb
             else
                 echo "Directory $dir does not exist."
             fi
diff --git a/PM1/python-linear-model-overfitting.ipynb b/PM1/python-linear-model-overfitting.ipynb
index 424560c0..050258b2 100644
--- a/PM1/python-linear-model-overfitting.ipynb
+++ b/PM1/python-linear-model-overfitting.ipynb
@@ -21,7 +21,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 5,
    "metadata": {
     "id": "YTaOmenI7TfT"
    },
@@ -44,7 +44,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 6,
    "metadata": {
     "id": "C57WYtYM7OL0",
     "papermill": {
@@ -56,7 +56,23 @@
     },
     "tags": []
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "p/n is: 1.0\n",
+      "R^2 is 1.0\n",
+      "Adjusted R^2 is nan\n",
+      "p/n is: 0.5\n",
+      "R^2 is 0.5232392347513539\n",
+      "Adjusted R^2 is 0.04647846950270784\n",
+      "p/n is: 0.05\n",
+      "R^2 is 0.05610356497156044\n",
+      "Adjusted R^2 is 0.006424805233221531\n"
+     ]
+    }
+   ],
    "source": [
     "regression_stats(1000, 1000)\n",
     "regression_stats(1000, 500)\n",
diff --git a/PM1/r-linear-model-overfitting.irnb b/PM1/r-linear-model-overfitting.irnb
index 60d7aafc..5385e5f8 100644
--- a/PM1/r-linear-model-overfitting.irnb
+++ b/PM1/r-linear-model-overfitting.irnb
@@ -65,7 +65,9 @@
      "languageId": "r"
     }
    },
-   "outputs": [],
+   "outputs": [
+     "text": ["asdfas\n"]
+   ],
    "source": [
     "\n",
     "set.seed(123)\n",