Cannot regenerate ICY data packages

[simleo]

I have encountered an error while trying to regenerate data packages from the ICY examples:

% python3 dpkg.py track_processor_ICY_clean.csv  
Configuration file found: cell_track_dpkg.ini
[...]
>>> opening file: track_processor_ICY_clean.csv
>>> header of the file:
trackID,t,x,y,z

>>> rest of the file:
0.0,0.0,129.8153846153846,995.0153846153846,0.0
[...]

Traceback (most recent call last):
  File "dpkg.py", line 38, in <module>
    dict_ = readfile.read_file(f, track_dict)
  File "/Users/simleo/git/cell_track_dpkg/dpkg/readfile.py", line 368, in read_file
    (objects, links) = read_cellprofiler(f, track_dict)
  File "/Users/simleo/git/cell_track_dpkg/dpkg/readfile.py", line 254, in read_cellprofiler
    digits = x.split('_')[2]
IndexError: list index out of range

[simleo]

After merging #19, ICY examples work, but not if run directly on the _clean files, i.e., we have to run python3 create_dpkg.py track_processor_ICY.csv. See #19 (comment)

[pcmasuzzo]

I see the point, but actually ICY does not generate csv files at all. You should instead run:
python3 create_dpkg.py track_processor_ICY.xls (is the xls that is used as a raw file input, as explained here).
Having said that, we most likely need to implement #16 to avoid extra issues.

[simleo]

You should instead run: python3 create_dpkg.py track_processor_ICY.xls

Forgot to mention that I've done that and it also works.

it is the xls that is used as a raw file input

Apologies for misreading your docs :) This is actually good, because for now we have a 1 to 1 relationship between extensions and formats.

[pcmasuzzo]

No problem at all.
And yes, right now we have a 1:1 relationship between extensions and formats 👍