From 9ed8062304a67dae86053dafe099a54567502515 Mon Sep 17 00:00:00 2001
From: Matthias De Smet <matthias.desmet@ugent.be>
Date: Wed, 21 Apr 2021 11:46:09 +0200
Subject: [PATCH] drop sam support

---
 README.md | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index c7d874a..150a8e0 100755
--- a/README.md
+++ b/README.md
@@ -56,11 +56,11 @@ There are three main stages (converting, reference creating and predicting) when
         observe additional improvement concerning normalization.  
 - Predict copy number alterations (using the reference file and test .npz cases of interest)  
 
-### Stage (1) Convert aligned reads (sam/bam/cram) to .npz
+### Stage (1) Convert aligned reads (bam/cram) to .npz
 
 ```bash
 
-WisecondorX convert input.sam/bam/cram output.npz [--optional arguments]
+WisecondorX convert input.bam/cram output.npz [--optional arguments]
 ```
 
 <br>Optional argument <br><br> | Function