pyproject.toml

[tool.black]
line-length = 88
skip-string-normalization = true
include = 'luigi_pipeline/tests/.*\.py$'

[tool.isort]
include_trailing_comma = 'True'
known_external_package = ['hail_scripts']
line_length = 88
profile = 'black'
sections = ['FUTURE', 'STDLIB', 'THIRDPARTY', 'EXTERNAL_PACKAGE', 'FIRSTPARTY', 'LOCALFOLDER']
skip_glob = ['download_and_create_reference_datasets/*', 'gcloud_dataproc/*', 'hail_scripts/*', 'kubernetes/*']

[tool.ruff]
extend-exclude = [
    'download_and_create_reference_datasets/*',
    'gcloud_dataproc/*',
    'hail_scripts/*',
    'kubernetes/*',
    'luigi_pipeline/lib/*',
    'luigi_pipeline/seqr*.py',
]
ignore = [
    # Individual Rules
    "E501",  # Black is less aggressive here when touching comments and strings, we're going to let those through.
    "G004",  # logging-f-string, these are fine for now

    # Rule Groupings
    "I",     # isort is enabled so this is unnecessary (for now, maybe we want to disable isort)
    "D",     # pydocstyle is for docs... we have none
    "FBT",   # flake-boolean-trap... disallows boolean args to functions... fixing this code will require refactors.
    "ANN",   # flake8-annotations is for typed code
    "DJ",    # django specific
    "T20",   # forbids print, we print quite a bit
    "PYI",   # pyi is typing stub files
    "PT",    # pytest specific
    "PTH",   # pathlib is preferred, but we're not using it yet
    "PD",    # pandas specific
    "NPY",   # numpy specific
]
line-length = 88
select = [
    "ALL"
]
target-version = "py38"

[tool.ruff.flake8-quotes]
inline-quotes = "single"