renderDT() and DTOutput() functions not found

[scrameri]

Dear Damaris and Christian,

I've just run the ODMAP shiny app and apparently the functions renderDT() and DTOutput() cannot be found using my shiny package version 1.5 in R version 4.0.2, there seems to be a conflict between the DT and shiny packages, or some function names have been changed in new shiny package versions:

> shiny::runApp('~/Downloads/ODMAP-master')
Loading required package: shiny

Listening on http://127.0.0.1:7369
Need Shiny help? I'm available for consulting:
	https://attalitech.com

Attaching package: ‘shinyjs’

The following object is masked from ‘package:shiny’:

    runExample

The following object is masked from ‘package:raster’:

    click

The following object is masked from ‘package:sp’:

    show

The following objects are masked from ‘package:methods’:

    removeClass, show


Attaching package: ‘shinyWidgets’

The following object is masked from ‘package:shinyjs’:

    alert


Attaching package: ‘shinydashboard’

The following object is masked from ‘package:graphics’:

    box


Attaching package: ‘DT’

The following objects are masked from ‘package:shiny’:

    dataTableOutput, renderDataTable

── Attaching packages ─────────────────────────────────────────────────────────────────── tidyverse 1.3.0 ──
✓ tibble  3.0.4     ✓ dplyr   1.0.2
✓ tidyr   1.1.2     ✓ stringr 1.4.0
✓ readr   1.4.0     ✓ forcats 0.5.0
✓ purrr   0.3.4     
── Conflicts ────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
x tidyr::extract() masks raster::extract()
x dplyr::filter()  masks stats::filter()
x dplyr::lag()     masks stats::lag()
x dplyr::select()  masks raster::select()
Type, vignette("rmm_directory") for an overview of functions

  vignette("rmm_vignette") for using the functions 

  vignette("rmm_workflow") for incorporating rmm in a range modeling workflow, or

  vignette("rmm_Multispeices") for including multiple species in a single rmm object
Warning: Error in : 'renderDT' is not an exported object from 'namespace:DT'
  50: stop
  49: getExportedValue
  48: ::
  47: server [/Users/crameri/Downloads/ODMAP-master/server.R#643]
Error : 'renderDT' is not an exported object from 'namespace:DT'
Warning: Error in DTOutput: could not find function "DTOutput"
  99: dots_list
  98: div
  97: render_authors [/Users/crameri/Downloads/ODMAP-master/server.R#22]
  96: renderUI [/Users/crameri/Downloads/ODMAP-master/server.R#90]
  95: func
  82: origRenderFunc
  81: output$Overview_UI
   1: shiny::runApp

Here is my session info:

>sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] rangeModelMetadata_0.1.3 forcats_0.5.0            stringr_1.4.0           
 [4] dplyr_1.0.2              purrr_0.3.4              readr_1.4.0             
 [7] tidyr_1.1.2              tibble_3.0.4             ggplot2_3.3.2           
[10] tidyverse_1.3.0          DT_0.2.10                shinydashboard_0.7.1    
[13] shinythemes_1.1.2        shinyWidgets_0.5.4       shinyjs_2.0.0           
[16] shiny_1.5.0             

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5        lubridate_1.7.9.2 assertthat_0.2.1  digest_0.6.27     mime_0.9         
 [6] R6_2.5.0          cellranger_1.1.0  backports_1.2.1   reprex_0.3.0      evaluate_0.14    
[11] httr_1.4.2        pillar_1.4.7      rlang_0.4.9       readxl_1.3.1      rstudioapi_0.13  
[16] rmarkdown_2.5     htmlwidgets_1.5.3 munsell_0.5.0     broom_0.7.2       compiler_4.0.2   
[21] httpuv_1.5.4      modelr_0.1.8      xfun_0.19         pkgconfig_2.0.3   htmltools_0.5.0  
[26] tidyselect_1.1.0  fansi_0.4.1       crayon_1.3.4      dbplyr_2.0.0      withr_2.3.0      
[31] later_1.1.0.1     grid_4.0.2        jsonlite_1.7.2    xtable_1.8-4      gtable_0.3.0     
[36] lifecycle_0.2.0   DBI_1.1.0         magrittr_2.0.1    scales_1.1.1      cli_2.2.0        
[41] stringi_1.5.3     fs_1.5.0          promises_1.1.1    xml2_1.3.2        ellipsis_0.3.1   
[46] generics_0.1.0    vctrs_0.3.5       tools_4.0.2       glue_1.4.2        hms_0.5.3        
[51] fastmap_1.0.1     yaml_2.2.1        colorspace_2.0-0  rvest_0.3.6       knitr_1.30       
[56] haven_2.3.1  

However, if I replace the five renderDT() with renderDataTable(), and the two DTOutput() with dataTableOutput() in the server.R script, it all works fine.

Have a nice weekend,
Simon

[ChrKoenig]

Thanks @scrameri, we'll take that into account with the next update.

[KianBabanezhad]

Thanks for your help. I did the replacement, then the application worked on the web.
But I have faced another problem. The editable table I had on the app disappeared once running on the web. How can I get it back?

[ChrKoenig]

Hi Kian, this repo is now maintained under https://github.com/UP-macroecology/ODMAP. Please install this version of ODMAP, the issue might be solved already. If not, please post over there.

[KianBabanezhad]

How can I install it? I tried < install_github("ODMAP-master") > , but I have an error.
Error in parse_repo_spec(repo) :
Invalid git repo specification: 'ODMAP-master'