Dockerfile

FROM qnib/slurmd

# Install dependencies
RUN dnf install -y openmpi-devel libmlx4 qperf infiniband-diags
# Application libs
RUN dnf install -y gsl libgomp
# bc
RUN dnf install -y bc

RUN echo "source /etc/profile" >> /etc/bashrc
RUN echo "module load mpi" >> /etc/bashrc

# Stress
#RUN yum install -y stress

# ADD source code
ADD opt/qnib/src/hello_mpi.c /opt/qnib/src/

ADD opt/qnib/jobscripts/ /opt/qnib/jobscripts/
ADD opt/qnib/bin/gemm_block_mpi_50ms /opt/qnib/bin/
ADD opt/qnib/bin/gemm_block_mpi_250ms /opt/qnib/bin/
ADD opt/qnib/bin/gemm_block_mpi_500ms /opt/qnib/bin/
ADD opt/qnib/bin/generate_work.sh /opt/qnib/bin/generate_work.sh

RUN pip install clustershell
RUN echo "su -l -c 'sbatch -N2 /opt/qnib/jobscripts/gemm.sh 16384 500' alice" >> /root/.bash_history && \
    echo "su -l -c 'sbatch -N4 /opt/qnib/jobscripts/ping_pong.sh' bob" >> /root/.bash_history && \
    echo "/opt/qnib/bin/generate_work.sh 10 3 compute5" >> /root/.bash_history
ADD etc/sensu/conf.d/check_ib.json /etc/sensu/conf.d/
ADD opt/qnib/sensu/bin/check_ib.py /opt/qnib/sensu/bin/check_ib.py
ENV SENSU_CHECK_IB=false