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Implement neural network parameterization of salty turbulent mixing in the upper ocean #3819

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Implement neural network parameterization of salty turbulent mixing in the upper ocean #3819

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Commits on Jun 24, 2024

  1. working version on CPU

    @xkykai
    xkykai committed Jun 24, 2024
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  2. a working model for GPU!

    @xkykai
    xkykai committed Jun 24, 2024
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Commits on Jun 25, 2024

  1. it actually works on the gpu now!

    @xkykai
    xkykai committed Jun 25, 2024
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  2. build scaling from tuple values

    @xkykai
    xkykai committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. Update XinKaiLocalVerticalDiffusivity with 2 Pr values

    @xkykai
    xkykai committed Jun 26, 2024
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  2. fix function construct_scaling to construct_zeromeanunitvariance_scaling

    @xkykai
    xkykai committed Jun 26, 2024
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  3. update using KernelParameters

    @xkykai
    xkykai committed Jun 26, 2024
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  4. fix nn closure bug

    @xkykai
    xkykai committed Jun 26, 2024
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  5. test script for nn closure

    @xkykai
    xkykai committed Jun 26, 2024
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Commits on Jun 27, 2024

  1. fix N2 average, tracer diffusivity expression for local diffusivity c… 

    …losure with 2 Pr
    @xkykai
    xkykai committed Jun 27, 2024
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Commits on Jun 28, 2024

  1. 2Pr version of local physical closure

    @xkykai
    xkykai committed Jun 28, 2024
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  2. nonlocal physical closure of vertical diffusivity

    @xkykai
    xkykai committed Jun 28, 2024
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  3. 2Pr nonlocal physical closure

    @xkykai
    xkykai committed Jun 28, 2024
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  4. working GPU version of NN closure with scaling and correction

    @xkykai
    xkykai committed Jun 28, 2024
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Commits on Jul 1, 2024

  1. validation script for oceananigans NN implementation

    @xkykai
    xkykai committed Jul 1, 2024
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  2. close file and record video of validation

    @xkykai
    xkykai committed Jul 1, 2024
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Commits on Jul 2, 2024

  1. Update Project.toml with new package dependencies

    @xkykai
    xkykai committed Jul 2, 2024
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  2. Update NN closure model to use a larger neural network

    @xkykai
    xkykai committed Jul 2, 2024
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  3. Remove unused import of StaticArrays

    @xkykai
    xkykai committed Jul 2, 2024
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  4. Add ComponentArrays dependency

    @xkykai
    xkykai committed Jul 2, 2024
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  5. add total_size and KernelParameters dependency

    @xkykai
    xkykai committed Jul 2, 2024
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Commits on Jul 17, 2024

  1. Coarsen LES data for NN closure model

    @xkykai
    xkykai committed Jul 17, 2024
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  2. rename file and compare LES with NN closure

    @xkykai
    xkykai committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. run LES for hald sinusoid cooling

    @xkykai
    xkykai committed Jul 18, 2024
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Commits on Aug 21, 2024

  1. run 3D simulation with limited extent

    @xkykai
    xkykai committed Aug 21, 2024
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  2. add sponge at bottom

    @xkykai
    xkykai committed Aug 21, 2024
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  3. fix metres to meters

    @xkykai
    xkykai committed Aug 21, 2024
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  4. fix temperature flux

    @xkykai
    xkykai committed Aug 21, 2024
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  5. Calculate average velocities and tracers in 3D model LES simulation

    @xkykai
    xkykai committed Aug 21, 2024
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  6. reduce size of model

    @xkykai
    xkykai committed Aug 21, 2024
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Commits on Aug 29, 2024

  1. run double gyre with physical closure

    @xkykai
    xkykai committed Aug 29, 2024
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  2. rename file

    @xkykai
    xkykai committed Aug 29, 2024
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  3. fix S forcing

    @xkykai
    xkykai committed Aug 29, 2024
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  4. use RiBasedVerticalDiffusivity as closure

    @xkykai
    xkykai committed Aug 29, 2024
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  5. fix sign errors in tracer fluxes

    @xkykai
    xkykai committed Aug 29, 2024
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  6. fix boundary conditions, initialize trivial model first

    @xkykai
    xkykai committed Aug 29, 2024
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  7. update boundary conditions, initial state

    @xkykai
    xkykai committed Aug 29, 2024
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  8. fix tyop_buoyancy_flux bug

    @xkykai
    xkykai committed Aug 29, 2024
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  9. fix initial conditions, run for 10 years, set up checkpointing

    @xkykai
    xkykai committed Aug 29, 2024
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Commits on Aug 30, 2024

  1. run double gyre with new physical closure

    @xkykai
    xkykai committed Aug 30, 2024
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Commits on Sep 4, 2024

  1. plotting barotropic streamfunction

    @xkykai
    xkykai committed Sep 4, 2024
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  2. fix plot units

    @xkykai
    xkykai committed Sep 4, 2024
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Commits on Sep 9, 2024

  1. Merge branch 'main' into xk/embed-nn

    @xkykai
    xkykai committed Sep 9, 2024
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  2. run double gyre with CATKE

    @xkykai
    xkykai committed Sep 9, 2024
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  3. Merge branch 'main' into xk/embed-nn

    @xkykai
    xkykai committed Sep 9, 2024
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  4. add TKE tracer for CATKE

    @xkykai
    xkykai committed Sep 9, 2024
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Commits on Sep 10, 2024

  1. fix closure to use only CATKE

    @xkykai
    xkykai committed Sep 10, 2024
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Commits on Sep 17, 2024

  1. update CATKE configuration

    @xkykai
    xkykai committed Sep 17, 2024
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  2. use older dependencies for compatibility with neural networks

    @xkykai
    xkykai committed Sep 17, 2024
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Commits on Sep 19, 2024

  1. add fields to be calculated for CATKE

    @xkykai
    xkykai committed Sep 19, 2024
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  2. local diffusivity for 2step calibration

    @xkykai
    xkykai committed Sep 19, 2024
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  3. new NN closure with nof and base boundary layer criteria

    @xkykai
    xkykai committed Sep 19, 2024
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Commits on Sep 20, 2024

  1. fix bug in NN closure implementation

    @xkykai
    xkykai committed Sep 20, 2024
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Commits on Sep 23, 2024

  1. using Grids.total_size

    @xkykai
    xkykai committed Sep 23, 2024
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  2. add using KernelParameters

    @xkykai
    xkykai committed Sep 23, 2024
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Commits on Sep 24, 2024

  1. update NN model

    @xkykai
    xkykai committed Sep 24, 2024
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  2. use BBL integral metric to compute base of boundary layer

    @xkykai
    xkykai committed Sep 24, 2024
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Commits on Oct 4, 2024

  1. Update xin_kai_vertical_diffusivity.jl 

    Co-authored-by: Gregory L. Wagner <[email protected]>
    @xkykai @glwagner
    xkykai and glwagner authored Oct 4, 2024
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Commits on Oct 6, 2024

  1. remove type piracy TEOS10.s

    @xkykai
    xkykai committed Oct 6, 2024
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  2. NN closure using BBL zone below nonbabkground kappa

    @xkykai
    xkykai committed Oct 6, 2024
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  3. run double gyre with NDE BBLkappazonelast41

    @xkykai
    xkykai committed Oct 6, 2024
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  4. change initialized state to 8day restoration forcing

    @xkykai
    xkykai committed Oct 6, 2024
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  5. run double gyre withj baseclosure initialized

    @xkykai
    xkykai committed Oct 6, 2024
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  6. NN closure for augmenting flux in a zone below MLD

    @xkykai
    xkykai committed Oct 6, 2024
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Commits on Oct 8, 2024

  1. 8 day relaxation double gyre for baseclosure

    @xkykai
    xkykai committed Oct 8, 2024
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  2. uncomment CairoMakie

    @xkykai
    xkykai committed Oct 8, 2024
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  3. NN closure and CATKE with 8 day restoration and warm flush

    @xkykai
    xkykai committed Oct 8, 2024
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  4. fix initial temperature issue

    @xkykai
    xkykai committed Oct 8, 2024
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Commits on Oct 9, 2024

  1. add zonal average calculations to double gyre simulation

    @xkykai
    xkykai committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. run double gyre with seasonal forcing

    @xkykai
    xkykai committed Oct 10, 2024
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Commits on Oct 16, 2024

  1. increase simulation run time

    @xkykai
    xkykai committed Oct 16, 2024
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Commits on Oct 17, 2024

  1. wall restoration to maintain strratification

    @xkykai
    xkykai committed Oct 17, 2024
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  2. baseclosure doublegyre with wallrestoration

    @xkykai
    xkykai committed Oct 17, 2024
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  3. change filenames

    @xkykai
    xkykai committed Oct 17, 2024
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  4. using wider zone for NN closure

    @xkykai
    xkykai committed Oct 17, 2024
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  5. fix variable error

    @xkykai
    xkykai committed Oct 17, 2024
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Commits on Oct 18, 2024

  1. update NN configuration

    @xkykai
    xkykai committed Oct 18, 2024
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  2. NDE double gyre script for seasonal forcing and wall restoration

    @xkykai
    xkykai committed Oct 18, 2024
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Commits on Oct 20, 2024

  1. run NNclosure with Ri nof BBLkappazonelast55

    @xkykai
    xkykai committed Oct 20, 2024
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Commits on Oct 22, 2024

  1. updated NN model with no Ri

    @xkykai
    xkykai committed Oct 22, 2024
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  2. run double gyre with NNclosure with no Ri input kappazonelast55

    @xkykai
    xkykai committed Oct 22, 2024
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Commits on Oct 24, 2024

  1. add fluxes calculations and zonal average

    @xkykai
    xkykai committed Oct 24, 2024
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  2. Merge branch 'main' into xk/embed-nn

    @xkykai
    xkykai committed Oct 24, 2024
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  3. Merge branch 'main' into xk/embed-nn

    @xkykai
    xkykai committed Oct 24, 2024
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  4. using centered second order in z instead of WENO

    @xkykai
    xkykai committed Oct 24, 2024
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  5. remove background vertical scalar diffusivity

    @xkykai
    xkykai committed Oct 24, 2024
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  6. diffusivity fields indexing for base closure

    @xkykai
    xkykai committed Oct 24, 2024
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Commits on Oct 30, 2024

  1. change temperature restoration to 30days

    @xkykai
    xkykai committed Oct 30, 2024
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  2. change vertical advection scheme to WENO5

    @xkykai
    xkykai committed Oct 30, 2024
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  3. update neural network to new weights

    @xkykai
    xkykai committed Oct 30, 2024
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  4. fix file name change

    @xkykai
    xkykai committed Oct 30, 2024
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Commits on Oct 31, 2024

  1. run double gyre with centered second order and wall restoration

    @xkykai
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  2. fix dynamic function invocation that doesn't affect the baseclosure s… 

    …cript somehow
    @xkykai
    xkykai committed Oct 31, 2024
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  3. add y resolution variable

    @xkykai
    xkykai committed Oct 31, 2024
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Commits on Nov 1, 2024

  1. run NN closure recording xz slices

    @xkykai
    xkykai committed Nov 1, 2024
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  2. recording and plotting xz yz slices and fluxes

    @xkykai
    xkykai committed Nov 1, 2024
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  3. change default z advection scheme to weno 5

    @xkykai
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Commits on Nov 6, 2024

  1. run with linear ramp seasonal forcing

    @xkykai
    xkykai committed Nov 6, 2024
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Commits on Nov 7, 2024

  1. fix T_seasonal

    @xkykai
    xkykai committed Nov 7, 2024
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Commits on Nov 8, 2024

  1. fix temperature restoration

    @xkykai
    xkykai committed Nov 8, 2024
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Commits on Nov 21, 2024

  1. implement different NNclosure with Ri zone

    @xkykai
    xkykai committed Nov 21, 2024
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  2. run double gyre on updated closure

    @xkykai
    xkykai committed Nov 21, 2024
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Commits on Nov 22, 2024

  1. new NN closure witth Rifirstzone

    @xkykai
    xkykai committed Nov 22, 2024
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  2. fix NN closure

    @xkykai
    xkykai committed Nov 22, 2024
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  3. fix NN_closure

    @xkykai
    xkykai committed Nov 22, 2024
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Commits on Nov 26, 2024

  1. updated base closure with new calibration

    @xkykai
    xkykai committed Nov 26, 2024
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  2. run base closure and CATKE with mode waters

    @xkykai
    xkykai committed Nov 26, 2024
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  3. fix advection scheme and file name

    @xkykai
    xkykai committed Nov 26, 2024
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  4. new NN closure including Ri

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    xkykai committed Nov 26, 2024
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  5. actual new closure including Ri

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    xkykai committed Nov 26, 2024
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  6. run double gyre with new NN closure

    @xkykai
    xkykai committed Nov 26, 2024
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  7. run CATKE for 10800days

    @xkykai
    xkykai committed Nov 26, 2024
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Commits on Nov 28, 2024

  1. Merge branch 'main' into xk/embed-nn

    @xkykai
    xkykai committed Nov 28, 2024
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Commits on Dec 2, 2024

  1. flush mode water after equilibration

    @xkykai
    xkykai committed Dec 2, 2024
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  2. fix filename

    @xkykai
    xkykai committed Dec 2, 2024
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Commits on Dec 3, 2024

  1. Revert "fix filename" 

    This reverts commit 88e3cf1.
    @xkykai
    xkykai committed Dec 3, 2024
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  2. Revert "flush mode water after equilibration" 

    This reverts commit 35dbad3.
    @xkykai
    xkykai committed Dec 3, 2024
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  3. Revert "Merge branch 'main' into xk/embed-nn" 

    This reverts commit f4f7383, reversing
changes made to 030c890.
    @xkykai
    xkykai committed Dec 3, 2024
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  4. fix script changes for modewater after equilibration

    @xkykai
    xkykai committed Dec 3, 2024
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