From 14b904ae291728ca12780fcf8205212b9681dad0 Mon Sep 17 00:00:00 2001
From: e-sollier <etienne.sollier@gmail.com>
Date: Wed, 20 Nov 2024 12:17:52 +0100
Subject: [PATCH] fix ase in case no DNA data is provided

---
 figeno/ase.py           | 3 ++-
 figeno/cli/cli.py       | 2 +-
 figeno/gui/package.json | 2 +-
 pyproject.toml          | 2 +-
 4 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/figeno/ase.py b/figeno/ase.py
index abfdde1..92a8e69 100644
--- a/figeno/ase.py
+++ b/figeno/ase.py
@@ -32,7 +32,8 @@ def read_SNPs_RNA(ase_file,gene=None,chr=None,start=None,end=None,exons=None,min
     if "refCount_DNA" in df.columns: variables_selected+=["refCount_DNA","altCount_DNA"]
     df = df[variables_selected]
     df["VAF"] = [min(df.loc[i,"refCount"],df.loc[i,"altCount"]) / (df.loc[i,"refCount"]+df.loc[i,"altCount"]) for i in df.index]
-    df["VAF_DNA"] = [min(df.loc[i,"refCount_DNA"],df.loc[i,"altCount_DNA"]) / (df.loc[i,"refCount_DNA"]+df.loc[i,"altCount_DNA"]) for i in df.index]
+    if "refCount_DNA" in df.columns:
+        df["VAF_DNA"] = [min(df.loc[i,"refCount_DNA"],df.loc[i,"altCount_DNA"]) / (df.loc[i,"refCount_DNA"]+df.loc[i,"altCount_DNA"]) for i in df.index]
     in_exons=[]
     if exons is not None:
         for i in df.index:
diff --git a/figeno/cli/cli.py b/figeno/cli/cli.py
index c7b79f7..998bfa0 100644
--- a/figeno/cli/cli.py
+++ b/figeno/cli/cli.py
@@ -2,7 +2,7 @@
 
 from figeno.cli import gui, init,make
 
-__version__ = "1.6.3"
+__version__ = "1.6.4"
 
 def main():
     parser = ArgumentParser("figeno",formatter_class=ArgumentDefaultsHelpFormatter)
diff --git a/figeno/gui/package.json b/figeno/gui/package.json
index aa291c5..6d72fec 100644
--- a/figeno/gui/package.json
+++ b/figeno/gui/package.json
@@ -1,6 +1,6 @@
 {
   "name": "figeno",
-  "version": "1.6.3",
+  "version": "1.6.4",
   "private": true,
   "homepage": "./",
   "dependencies": {
diff --git a/pyproject.toml b/pyproject.toml
index 81f4f00..171147a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -9,7 +9,7 @@ packages = ["figeno", "figeno.data", "figeno.cli", "figeno.gui"]
 
 [project]
 name = 'figeno'
-version = "1.6.3"
+version = "1.6.4"
 description = 'Package for generating genomics figures.'
 readme = 'README.md'
 authors = [