DESCRIPTION

Package: acorde
Type: Package
Title: Isoform co-usage networks from single-cell RNA-seq data
Version: 0.1.0
Authors@R: person("Ángeles", "Arzalluz-Luque", email = "angeles.arzalluz@gmail.com",
    role = c("aut", "cre"))
Description: acorde is an R package containing the code used in Arzalluz-Luque et al.
    2021, namely functions to perform single-cell RNA-seq isoform analysis. These include
    tools for multiple-cell type Differential Expression (DE) analysis, percentile correlation
    computation, dynamic isoform clustering and co-Differential Isoform Usage analysis.
Depends: R (>= 4.0)
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.1.2
Imports:
    car,
    dplyr,
    dynamicTreeCut,
    dismay,
    furrr,
    ggplot2,
    MASS,
    purrr,
    plotrix,
    Rdpack,
    SingleCellExperiment,
    stats,
    stringr,
    tidyr,
    tibble,
    utils
Suggests:
    knitr,
    BiocParallel,
    BiocStyle,
    DESeq2,
    edgeR,
    SummarizedExperiment,
    zinbwave,
    rmarkdown
Remotes:
    github::skinnider/dismay
RdMacros:
    Rdpack
VignetteBuilder: knitr