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Tip for running on other HPC
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thalassemia committed Nov 29, 2024
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Expand Up @@ -554,6 +554,15 @@ be absolute because Nextflow does not resolve environment variables like
2 hours to run should be excluded from workflow configurations and manually
run using :py:mod:`runscripts.analysis` afterwards.

.. tip::
If you have access to a different HPC cluster that also uses the SLURM
scheduler, you can use vEcoli on that cluster by simply changing
the ``process.queue`` option in ``runscripts/nextflow/config.template``
to the correct SLURM queue. If your HPC cluster uses a different scheduler,
you will have to change many options in the ``sherlock`` configuration
profile starting with ``process.executor``. Refer to the Nextflow
`executor documentation<https://www.nextflow.io/docs/latest/executor.html>`_.

.. _progress:

--------
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