Fix CI tests

CovertLab · Dec 8, 2024 · e28883a · e28883a
1 parent 2308bdf
commit e28883a
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/docs_deploy.yml b/.github/workflows/docs_deploy.yml
@@ -18,7 +18,7 @@ jobs:
       - name: Build documentation
         run: |
           cd doc
-          make html
+          uv run make html
       - name: Deploy documentation to GitHub pages
         run: |
           cd doc/_build/html

diff --git a/.github/workflows/docs_test.yml b/.github/workflows/docs_test.yml
@@ -20,4 +20,4 @@ jobs:
       - name: Build documentation
         run: |
           cd doc
-          make html
+          uv run make html
diff --git a/.github/workflows/pr_tests.yml b/.github/workflows/pr_tests.yml
@@ -16,7 +16,7 @@ jobs:
     - name: Install uv
       run: curl -LsSf https://astral.sh/uv/install.sh | sh
     - name: Install model
-      run: uv sync --frozen
+      run: USE_CYTHON=1 uv sync --frozen
     - name: Test ParCa reproducibility
       run: |
         uv run --env-file .env runscripts/parca.py --config ecoli/composites/ecoli_configs/run_parca.json \

diff --git a/ecoli/analysis/single/mass_fraction_summary.py b/ecoli/analysis/single/mass_fraction_summary.py
@@ -1,5 +1,5 @@
 import os
-from typing import Any, cast
+from typing import Any
 
 from duckdb import DuckDBPyConnection
 import polars as pl
@@ -50,7 +50,7 @@ def plot(
     )
 
     fractions = {
-        k: (mass_data[v] / mass_data["listeners__mass__dry_mass"]).mean()
+        k: float((mass_data[v] / mass_data["listeners__mass__dry_mass"]).mean())
         for k, v in mass_columns.items()
     }
     new_columns = {