diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml index 8e9d4bc..b2a3251 100644 --- a/.github/workflows/build.yaml +++ b/.github/workflows/build.yaml @@ -6,10 +6,10 @@ on: - main paths: - 'apt.txt' - - 'conda-linux-64.lock' - - 'environment.yml' - - 'start' + - 'conda-lock.yml' + - 'environment-cryocloud.yml' - 'postBuild' + - 'start' # Trigger rebuilds if the build process changes - '.github/workflows/build.yaml' diff --git a/.github/workflows/conda-lock-command.yml b/.github/workflows/conda-lock-command.yml index 587f32a..6808e90 100644 --- a/.github/workflows/conda-lock-command.yml +++ b/.github/workflows/conda-lock-command.yml @@ -44,12 +44,12 @@ jobs: # HACK: Temporarily pin urllib3<2 to resolve incompatibilities: # https://github.com/ionrock/cachecontrol/issues/292 - name: Install conda-lock - run: 'pip install conda-lock "urllib3<2"' + run: 'pip install "conda-lock>=2.1.0" "urllib3<2"' # Run "conda-lock" for linux-64 only - name: Run conda-lock run: | - conda-lock lock --mamba --kind explicit --file environment.yml --platform linux-64 + conda-lock lock --mamba --file environment-cryocloud.yml --platform linux-64 # Commit the change to the PR branch if any changes - name: Commit condalock files to PR diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml index 9c80518..fe2ad4d 100644 --- a/.github/workflows/test.yaml +++ b/.github/workflows/test.yaml @@ -4,8 +4,8 @@ on: pull_request: paths: - 'apt.txt' - - 'conda-linux-64.lock' - - 'environment.yml' + - 'conda-lock.yml' + - 'environment-cryocloud.yml' - 'postBuild' - 'start' # Trigger rebuilds if the test process changes diff --git a/README.md b/README.md index fc9a170..088e57f 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ doc](https://repo2docker.readthedocs.io/en/latest/config_files.html#config-files You can add or update packages on the cryointhecloud hub by making pull requests to this repository. Follow these steps: -1. Edit either the [`environment.yml`](https://github.com/CryoInTheCloud/hub-image/edit/main/environment.yml) +1. Edit either the [`environment-cryocloud.yml`](https://github.com/CryoInTheCloud/hub-image/edit/main/environment-cryocloud.yml) file (for most packages) or [`apt.txt`](https://github.com/CryoInTheCloud/hub-image/edit/main/apt.txt) file (for packages that need to be used in the Linux Desktop environment in the cloud). 2. 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Manually bump it when you want to upgrade # jupyterlab version - - jupyterlab>=3.0,<4.0 + - jupyterlab>=3.5,<4.0 # This provides memory usage stats on JupyterLab and classic notebook - jupyter-resource-usage==0.7.1 # https://syncthing.net/ provides a dropbox-like interface for syncing directories across users, diff --git a/postBuild b/postBuild old mode 100755 new mode 100644 index eea666a..6df81fc --- a/postBuild +++ b/postBuild @@ -7,3 +7,6 @@ set -euo pipefail # used in the JupyterHub. cp custom_jupyter_server_config.json ${NB_PYTHON_PREFIX}/etc/jupyter/jupyter_server_config.d/ cp custom_jupyter_server_config.json ${NB_PYTHON_PREFIX}/etc/jupyter/jupyter_notebook_config.d/ + +pip install --no-cache conda-lock>=2.1.0 +conda-lock install --mamba --name notebook conda-lock.yml