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Plot holes if any within annotations #43

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merged 2 commits into from
Nov 7, 2023
Merged

Plot holes if any within annotations #43

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53045d8
plot holes if any within annotations
tsikup Nov 7, 2023
9c766cf
moved hole plotting in polygon if statement
tsikup Nov 7, 2023
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3 changes: 3 additions & 0 deletions wholeslidedata/visualization/plotting.py
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Original file line number Diff line number Diff line change
Expand Up @@ -69,6 +69,9 @@ def plot_annotations(
ax.scatter(*coordinates, color=color)
elif isinstance(annotation, PolygonAnnotation):
ax.plot(*list(zip(*coordinates)), color=color, linewidth=2)
holes = [np.array(hole) * scale for hole in annotation.holes]
for hole in holes:
ax.plot(*list(zip(*hole)), color=color, linewidth=2)
else:
raise ValueError(f"invalid annotation {type(annotation)}")

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