Solve some Singularity issues. Updates. DSL2 Migration.#57

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vinjana wants to merge 8 commits intomasterfrom DSL2

+366-191

Commits on Mar 7, 2024

Updated Nextflow for the tests. Found a way to combine process options from different profiles.
vinjana
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Commits on Mar 8, 2024

Updated Dockerfile and Singularity.def. Moved test/run.sh to integration-testsd/run.sh.
vinjana
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Changed order of integration-test/run.sh parameters.
vinjana
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