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Charlotte's journal.rtf
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Charlotte's journal.rtf
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\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li5040\lin5040 }{\listlevel\levelnfc23\levelnfcn23\leveljc0
\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li5760\lin5760 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1
\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li6480\lin6480 }{\listname ;}\listid1836651252}{\list\listtemplateid-1020214230\listhybrid{\listlevel\levelnfc23\levelnfcn23
\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li720\lin720 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1
\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li1440\lin1440 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext
\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li2160\lin2160 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689
\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li2880\lin2880 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0
\fi-360\li3600\lin3600 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li4320\lin4320 }{\listlevel
\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li5040\lin5040 }{\listlevel\levelnfc23\levelnfcn23\leveljc0
\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li5760\lin5760 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1
\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li6480\lin6480 }{\listname ;}\listid1875729049}{\list\listtemplateid173546610\listhybrid{\listlevel\levelnfc23\levelnfcn23\leveljc0
\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li720\lin720 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0
\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li1440\lin1440 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext
\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li2160\lin2160 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689
\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li2880\lin2880 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0
\fi-360\li3600\lin3600 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li4320\lin4320 }{\listlevel
\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li5040\lin5040 }{\listlevel\levelnfc23\levelnfcn23\leveljc0
\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li5760\lin5760 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1
\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li6480\lin6480 }{\listname ;}\listid1882134068}{\list\listtemplateid260882982\listhybrid{\listlevel\levelnfc23\levelnfcn23\leveljc0
\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li720\lin720 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0
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\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li2160\lin2160 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689
\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li2880\lin2880 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0
\fi-360\li3600\lin3600 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li4320\lin4320 }{\listlevel
\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li5040\lin5040 }{\listlevel\levelnfc23\levelnfcn23\leveljc0
\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li5760\lin5760 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1
\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li6480\lin6480 }{\listname ;}\listid2113276651}{\list\listtemplateid-153348298\listhybrid{\listlevel\levelnfc23\levelnfcn23
\leveljc0\leveljcn0\levelfollow0\levelstartat1\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li720\lin720 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1
\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li1440\lin1440 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0
{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li2160\lin2160 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689
\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li2880\lin2880 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0
\fi-360\li3600\lin3600 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li4320\lin4320 }{\listlevel
\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698689\'01\u-3913 ?;}{\levelnumbers;}\f3\fbias0 \fi-360\li5040\lin5040 }{\listlevel\levelnfc23\levelnfcn23\leveljc0
\leveljcn0\levelfollow0\levelstartat1\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698691\'01o;}{\levelnumbers;}\f2\fbias0 \fi-360\li5760\lin5760 }{\listlevel\levelnfc23\levelnfcn23\leveljc0\leveljcn0\levelfollow0\levelstartat1
\lvltentative\levelspace0\levelindent0{\leveltext\leveltemplateid67698693\'01\u-3929 ?;}{\levelnumbers;}\f10\fbias0 \fi-360\li6480\lin6480 }{\listname ;}\listid2122142604}}{\*\listoverridetable{\listoverride\listid811171715\listoverridecount0\ls1}
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\listoverridecount0\ls24}{\listoverride\listid1059551229\listoverridecount0\ls25}}{\*\rsidtbl \rsid92495\rsid344921\rsid590140\rsid884068\rsid996618\rsid1193842\rsid2190281\rsid2430266\rsid2513443\rsid2718437\rsid2782476\rsid2784689\rsid2884371
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{\author Charlotte}{\operator David Ayeke}{\creatim\yr2015\mo6\dy20\hr16\min15}{\revtim\yr2015\mo6\dy20\hr16\min15}{\version2}{\edmins0}{\nofpages1}{\nofwords2961}{\nofchars16881}{\nofcharsws19803}{\vern57439}}{\*\xmlnstbl {\xmlns1 http://schemas.microsof
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{\*\wgrffmtfilter 2450}\nofeaturethrottle1\ilfomacatclnup0\ltrpar \sectd \ltrsect\linex0\endnhere\sectlinegrid360\sectdefaultcl\sftnbj {\*\pnseclvl1\pnucrm\pnstart1\pnindent720\pnhang {\pntxta .}}{\*\pnseclvl2\pnucltr\pnstart1\pnindent720\pnhang
{\pntxta .}}{\*\pnseclvl3\pndec\pnstart1\pnindent720\pnhang {\pntxta .}}{\*\pnseclvl4\pnlcltr\pnstart1\pnindent720\pnhang {\pntxta )}}{\*\pnseclvl5\pndec\pnstart1\pnindent720\pnhang {\pntxtb (}{\pntxta )}}{\*\pnseclvl6\pnlcltr\pnstart1\pnindent720\pnhang
{\pntxtb (}{\pntxta )}}{\*\pnseclvl7\pnlcrm\pnstart1\pnindent720\pnhang {\pntxtb (}{\pntxta )}}{\*\pnseclvl8\pnlcltr\pnstart1\pnindent720\pnhang {\pntxtb (}{\pntxta )}}{\*\pnseclvl9\pnlcrm\pnstart1\pnindent720\pnhang {\pntxtb (}{\pntxta )}}
\pard\plain \ltrpar\qc \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2782476 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid2782476\charrsid5784579 Charlotte Bourg iGEM Journal}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9591986\charrsid5784579
\par }\pard \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2782476 {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid2782476\charrsid5784579 6/1/15
\par }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 Fill in from journal}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid2782476\charrsid5784579
\par }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 6/2/15
\par Make 1.5 liters of Luria-Bertani (LB) agar and 1.5 liters of LB media}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579 (in Zhang lab)}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 :
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid7687704\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls1\adjustright\rin0\lin720\itap0\pararsid7687704\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid7687704\charrsid5784579 Recipe for 1 liter of total volume of LB:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7687704\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls1\ilvl1\adjustright\rin0\lin1440\itap0\pararsid7687704\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 5}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 g of yeast extract
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7687704\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}10}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid7687704\charrsid5784579 g of NaCl
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7687704\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}10}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid7687704\charrsid5784579 g of tryptone
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7687704\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}15}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid7687704\charrsid5784579 g of agar (for LB agar only)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid7687704\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls1\adjustright\rin0\lin720\itap0\pararsid7687704\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 add 2}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 L of water to a flask with 15}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 g yeast extract, 30}{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 g NaCl, and 30}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid7687704\charrsid5784579 g tryptone
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid7687704\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}stir until dissolved
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid7687704\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}add 500 mL of the dissolved solution to each of 3 bottles with 7.5}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 mL of agar
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid7687704\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}divide the remaining solution between 2 1-L bottles
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid7687704\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}autoclave the bottles:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7687704\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls1\ilvl1\adjustright\rin0\lin1440\itap0\pararsid7687704\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579 loosen the lid of the bottles slightly
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7687704\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}put autoclave tape crossing from the bottle onto the lid\emdash can move to the lid later
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7687704\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls1\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7687704\charrsid5784579
place sensor in a flask of water (would leave sensor in holder for hard goods)}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid8345116 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579 Make overnight cultures from frozen stock to make electrocompetent cells the next day (in Moon lab):
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid8345116\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls2\adjustright\rin0\lin720\itap0\pararsid8345116\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid8345116\charrsid5784579 strains: JM109 and MG1655
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid8345116\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}from glycerol stock, }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
set up two 50mL cultures in 250-}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579 mL flasks
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid8345116\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}grow }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579
overnight}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid8345116 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579 6/3/15
\par Electrocompetent prep of JM109 and MG1655 (in Moon lab):
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid8345116\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\adjustright\rin0\lin720\itap0\pararsid8345116\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid8345116\charrsid5784579 add 25}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579 mL of each culture (JM109 and MG1655) into 500 mL of LB in a 2}{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579 L flask
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid8345116\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}grow at 37}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579
\'b0C and 250 rpm for ~1 hour}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8345116\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 started at ~10:33}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 am, taken out at ~11:35}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 am}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid8345116\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\adjustright\rin0\lin720\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 add a 10x dilution into cuvettes}{\rtlch\fcs1
\af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8345116\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 900}{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 L of H}{\rtlch\fcs1 \af1 \ltrch\fcs0
\sub\chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 2}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 0 and 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 L of JM109}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8345116\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 900}{\rtlch\fcs1
\ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 L of H}{\rtlch\fcs1 \af1 \ltrch\fcs0
\sub\chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 2}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 0 and 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 L of MG1655}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid8345116\charrsid5784579 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl2\adjustright\rin0\lin2160\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 Mix each with the pipetter}{\rtlch\fcs1
\af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8345116\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 blank cuvette: 1}{\rtlch\fcs1 \ab\af1
\ltrch\fcs0 \cf1\chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 mL of water}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid8345116\charrsid5784579 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl2\adjustright\rin0\lin2160\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 avoid touching the bottom area of the cuvettes}
{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid8345116\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\adjustright\rin0\lin720\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 take the OD}{\rtlch\fcs1 \af1 \ltrch\fcs0
\sub\chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 600}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 :}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8345116\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 open i-control application and use file \'93
cuvette 600\'94}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid8345116\charrsid5784579 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl2\adjustright\rin0\lin2160\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 specific to Moon lab}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5340816\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5340816\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579 click \'93apply blanking\'94
and start blanking, then take measurements of other 2 cuvettes}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8345116\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 JM109 has OD .287}{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8345116\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8345116\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8345116\charrsid5784579 MG1655 has OD .390}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid8345116\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5340816\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579
Desired range: 0.35 to 0.4}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid5340816\charrsid5784579 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl2\adjustright\rin0\lin2160\itap0\pararsid5340816\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579
Put JM109 flask back in incubator for ~15 minutes starting at 11:56}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579
am to try to increase OD}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid5340816\charrsid5784579 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579
Leave MG1655 on bench top (growing more slowly)}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5340816\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5340816\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579 Second measurement of OD of JM109: 0.375
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid5340816\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\adjustright\rin0\lin720\itap0\pararsid5340816\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579 In cold (4}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579 \'b0C) room, evenly distribute each culture into 2 centrifuge bottles (total of 4 bottles) and place in an ice bucket. Wait for 15-30 minutes.}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5340816\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5340816\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579 Placed on ice at ~12:30}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579 pm}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid5340816\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\adjustright\rin0\lin720\itap0\pararsid5340816\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579 Keep on ice and bring bottles to centrifuge. Set at 4
\'b0C and 3000}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579 rpm for 25 minutes}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid5340816\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579
Return to cold room and discard supernatant by pouring quickly and gently }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid5340816\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579
Suspend with total 500 mL of water (125}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579
mL each bottle) and swirl until pellet disappears}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5340816\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid5340816\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls3\adjustright\rin0\lin720\itap0\pararsid344921\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5340816\charrsid5784579 Centrifuge at 4\'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 and 3000 rpm for 25 minutes}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579
In cold room, discard liquid and suspend pellet gently (by swirling) with total 220 mL of 10% glycerol (55 mL each bottle) until you do not see pellet}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579
Aliquot contents of each bottle into 4 15-mL conical tubes (16 tubes total)}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 Centrifuge at 4
\'b0C and 3000 rpm for 25 minutes}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 In cold room, po
ur off the liquid and pipette out the remaining liquid}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579
Resuspend pellets in 1 mL glycerol in each tube, then combine into 1 tube per strain}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 Centrifuge at 4
\'b0C and 3000 rpm for 25 minutes}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579
In cold room pour out liquid and pipette of remaining liquid}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579
Add 1.5 mL of 10% glycerol to each tube and resuspend}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 Aliquot 40 }{
\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579
L each into small labeled vials and place in a labeled box in the -80\'b0C freezer}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid344921 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579 Transformation (in Moon lab):
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\adjustright\rin0\lin720\itap0\pararsid344921\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid344921\charrsid5784579 Take MG1655 and WM1788 electrocompetent cells out of -80}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 \'b0C and place on ice}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 Take
PSL2397 (plasmid) out of -80\'b0C and place on ice}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid344921\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 Add 2 }{
\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579 L of PSL2397 directly into MG1655 tube}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid344921\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\ilvl1\adjustright\rin0\lin1440\itap0\pararsid344921\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid344921\charrsid5784579
Just add; do not draw back up and down with pipette}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid7235815\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\adjustright\rin0\lin720\itap0\pararsid7235815\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579 Set pipette over 40 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579 L and draw up the MG1655 and PSL2397 mixture and place into electroporation cuvette }{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7235815\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid7235815\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579 Tap
cuvette to ensure cells are at bottom of cuvette\emdash should check to see that there are no gaps\emdash and place into electroporator; turn on}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7235815\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid7235815\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579
Immediately add 500 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579
L of LB into the cuvette then pour into culture tube}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7235815\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid7235815\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579
Place culture tube into incubator for 1 hour }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7235815\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7235815\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\ilvl1\adjustright\rin0\lin1440\itap0\pararsid7235815\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579 MG16
55 placed into incubator at 4:58 pm and had time constant of 5.5 ms}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7235815\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid7235815\charrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\adjustright\rin0\lin720\itap0\pararsid7235815\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579 Repeat with WM1788}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid7235815\charrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid7235815\charrsid5784579 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls4\ilvl1\adjustright\rin0\lin1440\itap0\pararsid7235815\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid7235815\charrsid5784579
Placed into incubator at 5:04 pm and had time constant of 5.3 ms}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7235815\charrsid5784579
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid7235815 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid344921\charrsid5784579
\par }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid7235815\charrsid5784579 6/4/15
\par }\pard \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488 Isolate plasmid (Zhang lab):
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid9129488\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid9129488 Work within 30 cm of flame and flame lip of glass flask at opening and closing
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 50 mL of LB to conical 50 ml tube
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 50 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid9129488\charrsid5784579 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488\charrsid5784579 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 of chloramphenicol and mix }{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Pour into 125 mL flask}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488
Add 1.5 mL of PA2C-TesA (cells with plasmid to be isolated) with a 1000 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid9129488\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid9129488\charrsid5784579 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 pipette}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488
Place flask on shaker in warm room at 250 rpm (200 to 250 rpm in standard for E. coli)}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Placed on shaker at 9:20 am \endash
leave there until ~ 2 or 3 pm}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Took out of warm room/off shaker at 2:12pm}{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Pour into a 50 mL conical tube}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488
Centrifuge until supernatant is clear and then pour off supernatant}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Add 2.5 mL of resuspension bu
ffer and pipette in and out to resuspend until no pellet remains}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488
Add 2.75 mL of lysis buffer and invert a few times to mix}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Solution is now viscous}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Add 4 mL of neutralization buffer and invert a few times to mix}{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Solution is cloudy}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Centrifuge at 4700 rpm for 15 minutes}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488
Supernatant not completely clear after centrifuging, but that is fine because it will be filtered}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488
Filter into a new conical tube using a syringe with a cotton ball in it}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Filtered liquid is clear}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488 Add 2.5 times the volume of the liquid of cold pure ethanol (~10 mL }{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid9129488 {\field{\*\fldinst SYMBOL 224 \\f "Wingdings" \\s 11}{\fldrslt\f10\fs22}}}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488 ~35 mL total volume
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Put in -20}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488\charrsid5784579 \'b0C}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 for 20 minutes}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Put in at ~4:00 pm}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid9129488 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Taken out at ~4:22 pm}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid9129488 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid9129488\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 Centrifuge for 25 minutes at 4}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid9129488\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid9129488 at 4700 rpm, then check for a pellet}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9129488\charrsid9129488
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Pour off supernatant}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid9129488\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid15993217 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid15993217\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Can tap the top of the tube against a paper towel to
remove more ethanol}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid15993217\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217
Add at least 20 mL of 70% EtOH and shake to break up the pellet, then fortex}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Centrifuge at 3000 rpm for 7 minutes at 4}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 \'b0C}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Pour off the supernatant}{\rtlch\fcs1
\af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Resuspend in 500 }{\rtlch\fcs1 \ab\af1
\ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217
of TE RNAse A (20 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 g/mL)}{\rtlch\fcs1 \af31507 \ltrch\fcs0
\insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217
Add 5 times that volume (2.5 mL) of BNL buffer (from old miniprep kit) and pipette in and out to mix}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Add 750 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217
of the solution to a spin mini column and collection tube}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217
Balance centrifuge and spin for 1 minute at 12500 rpm; discard flow-through}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217 Repeat with additional 750 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217
until all of the solution has run through the column (centrifuge each time on the same settings and in the same column)}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217
Spin down for 2 minutes at 12500 rpm to get rid of the rest of ethanol}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid15993217 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\ilvl1\adjustright\rin0\lin1440\itap0\pararsid15993217\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Optional step that was not performed: can put in 50}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 room for a few minutes to evaporate the rest of the ethanol}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid15993217\charrsid15993217
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid15993217 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls7\adjustright\rin0\lin720\itap0\pararsid15993217\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217 Add 750 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15993217\charrsid5784579 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470
of wash buffer; spin and discard the flow-through}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid15993217\charrsid4154470
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid4154470 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470 Repeat with additional 750 }{\rtlch\fcs1
\ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid4154470\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470\charrsid5784579 L}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid4154470 of wash buffer}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid4154470\charrsid4154470
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid4154470 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470
Place column into a new Eppendorf tube and place 40 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid4154470\charrsid5784579 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470\charrsid5784579 L}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470 off eluent (in this case, water) directly onto the bottom of the column without touching it with the pipette tip}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid4154470\charrsid4154470
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid4154470 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470 Wait ~3 minutes}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid4154470\charrsid4154470
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid4154470 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470
Centrifuge at 13000 rpm for 2 minutes and label flow-through vial}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid4154470\charrsid4154470
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid4154470 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid4154470
Take measurement on nanodrop and label the vial with the concentration}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid4154470
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1
\af31507 \ltrch\fcs0 \insrsid5784579 Use SnapGene to design primers for the 14 sequences to be overexpressed:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid5784579 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid5784579\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid5784579 Check for EcoRI and XhoI restriction sit}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936 es within each of the sequences}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5784579
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid4467404\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936 Check for directionality on the plasmid: direct or complementary}{\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid4467404
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid5784579\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936 If a restriction enzyme does not have sites within the
sequence, add a site for that restriction enzyme to the appropriate primer and add 6 adenines beyond the site on the primer so that the restriction enzyme will work properly
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}If the restriction enzyme does have a site within the sequence, end the primer at
the end of the sequence to be amplified to leave the ends blunt
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}If direct, add EcoRI to the 5\rquote end and XhoI to the 3\rquote end as appropriate
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}If complementary, add XhoI to the 5\rquote end and EcoRI to the 3\rquote end as appropriate
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid6375002\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936 Maintain a T}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \sub\insrsid10373936\charrsid10373936 m }{
\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936 for each primer above 60}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10373936\charrsid10373936 \'b0}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10373936
C and approximately match the }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10373936\charrsid10373936 T}{\rtlch\fcs1 \af1 \ltrch\fcs0 \sub\chshdng0\chcfpat0\chcbpat8\insrsid10373936\charrsid10373936 m}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid10373936 of paired primers}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936\charrsid10373936
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936\charrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls5\adjustright\rin0\lin720\itap0\pararsid10373936\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936\charrsid10373936 Ensure that}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936
there is only 1 binding site on the plasmid for each primer
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1
\af31507 \ltrch\fcs0 \insrsid5784579 6/5/15
\par Continue designing primers as on 6/4 and check for c}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936 orrect amplification and for suggested annealing temperatures on amplifX:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls6\adjustright\rin0\lin720\itap0\pararsid10373936\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid10373936 Add the primers designed in SnapGene to the primers list of AmplifX
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add the full sequence of the plasmid to the sequence portion of AmplifX
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Select the primers in pairs as they should be used and select the full sequence; then click \'93PCR\'94 > \'93Run PCR
\'94
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid10373936 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Click on the amplicon in the window at the bottom to display information on it, then see the \'93Infos\'94
tab for details
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid10373936 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls6\ilvl1\adjustright\rin0\lin1440\itap0\pararsid10373936\contextualspace {\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid10373936
Check for expected annealing of primers, correct amplicon (length and portion of plasmid), and take note of information especially suggested annealing temperature
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1
\af31507 \ltrch\fcs0 \insrsid10373936 Order primers}{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid5784579
\par }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid9857289
\par 6/8/15
\par Waiting for primers\emdash no wet lab work
\par
\par 6/9/15
\par Group the 14 amplicons to be overexpressed by size so that similarly sized fragments can be run through PCR together }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid2718437
\par }{\rtlch\fcs1 \af31507 \ltrch\fcs0 \insrsid6375002 Primers arrive
\par Resuspend the dry primers in Tris-EDTA (TE) solution:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af31507\afs22 \ltrch\fcs0 \f3\fs22\insrsid6375002 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls8\adjustright\rin0\lin720\itap0\pararsid6375002\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af31507
\ltrch\fcs0 \insrsid6375002 Add TE in }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid6375002\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002\charrsid6375002
L 10 times the number of nmoles of primer that there are in each vial}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002 \emdash just add the solution; do not pipette in and out
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid6375002 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Place the vials in the thermomixer at 65}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid6375002\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002 for ~10 minutes
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid6375002 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002 Make a 10x dilution of the concentrated primer solution:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid6375002 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid6375002\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid6375002 To labeled vials, add:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid6375002 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid6375002\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002 90 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid6375002\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002 of H}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \sub\chshdng0\chcfpat0\chcbpat8\insrsid6375002 2}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002 0 MQft
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid6375002 \hich\af2\dbch\af31506\loch\f2 o\tab}10 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid6375002\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002 of primer solution
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid15891047 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033
{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 Picked one of the groupings of amplicons made earlier to run PCR at the same settings: today, doing hesA, nifB, and nifV. Run 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 PCR tubes
\par Calculate volumes of solutions to add for 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 tube, then make 320 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 of solution, without adding primers or polymerase, then complete the PCR solutions in
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2718437 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid2718437\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2718437 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 recipe:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2718437\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 29.9 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 water
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}20 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 Phusion buffer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}16 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 dNTP solution
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \ab\af2\afs22 \ltrch\fcs0 \f2\fs22\cf1\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437 2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 forward primer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 reverse primer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 22.74 ng/}{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437
PSL2397 (plasmid as DNA template)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}7.5 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 DMSO
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}20 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 betaine
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}.6 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 Phusion polymerase
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2718437 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid2718437\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 Make }{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid590140 PCR master mix for }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 320 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437
of solution without primers or polymerase, adding:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2718437\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 95.68 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 water
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}64 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 buffer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}51.2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 dNTP solution
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}6.4 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 template DNA
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}24 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 DMSO
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}64 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 betaine
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2718437 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid2718437\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 Add 95.4 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437
of that solution to each }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 of 3 labeled PCR tubes, then add the following to complete the reaction mixtures}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437
:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2718437\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 }{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168 of 10x diluted }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 appropriate forward primer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168 of 10x diluted}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437
appropriate reverse primer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2718437 \hich\af2\dbch\af31506\loch\f2 o\tab}.6 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2718437 polymerase
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid2718437\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Run the 3 PCR tubes under the following conditions:}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6375002
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid10506450 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid10506450\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 98}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 for 2 minutes initially
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid10506450 \hich\af2\dbch\af31506\loch\f2 o\tab}Cycle the following 35 times:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid10506450 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl2\adjustright\rin0\lin2160\itap0\pararsid10506450\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 98}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 for 25 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid10506450 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}56}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 for 35 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid10506450 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}72}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 for 45 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid10506450 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid10506450\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Hold at 10}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid10506450 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033
{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Prepare a gel:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls10\adjustright\rin0\lin720\itap0\pararsid10506450\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Add ~50 mL of 1% agarose (in tris acetic acid EDTA or TAE buffer) to a flask in the ethidium bromide (EtBr) area of the lab
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 4 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid6375002 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 of EtBr to the flask and swirl to mix
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Pour the mixture into the gel plate, with a plastic piece inserted to form 3 large wells and a small one on the side
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid10506450 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls10\ilvl1\adjustright\rin0\lin1440\itap0\pararsid10506450\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Try to remove bubbles\emdash
can chase them out with a pipette tip
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls10\adjustright\rin0\lin720\itap0\pararsid10506450\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Allow the gel to set
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Pour additional TAE buffer into the plate as necessary
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Pipette in and out of wells to clear them of any agarose\emdash want clean wells in the gel
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid10506450 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033
{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Take samples out of PCR thermocycler and run them in the gel:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls11\adjustright\rin0\lin720\itap0\pararsid10506450\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 Add 15 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid10506450\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid10506450 of 10x DNA loading dye to each and pipette in and out to mix to homogeneity
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add each mixture to one of the wells in the gel
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 1 kb ladder to the small well
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Run the gel at ~82 V for ~20 minutes until 2 different shades of blue bands appear
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid10506450 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Run the gel at ~120 V for an additional ~20 minutes
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid590140 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140
\par 6/10/15
\par }\pard \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\tx4020\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid590140 {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 Run PCR for the remaining amplicons\tab }
{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid590140
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid590140 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid590140\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid590140 Make PCR master mix for 1200 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 of solution without primers or polymerase, adding:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid590140 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid590140\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 358.8 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 water (add 359 }{
\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid590140 with a P1000)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid590140 \hich\af2\dbch\af31506\loch\f2 o\tab}240 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 buffer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid590140 \hich\af2\dbch\af31506\loch\f2 o\tab}192 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 dNTP solution
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid590140 \hich\af2\dbch\af31506\loch\f2 o\tab}24 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 22.74 ng/}{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140
PSL2397 (plasmid as DNA template)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid590140 \hich\af2\dbch\af31506\loch\f2 o\tab}90 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 DMSO
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid590140 \hich\af2\dbch\af31506\loch\f2 o\tab}240 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 betaine
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid590140 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid590140\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140 Add 95.4 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid590140
of master mix to each of 11 labeled PCR tubes
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid3040168 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid3040168\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168 Add 95.4 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168
of that solution to each of 11 labeled PCR tubes, then add the following to complete the reaction mixtures:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid3040168 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid3040168\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168 2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168
of 10x diluted appropriate forward primer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid3040168 \hich\af2\dbch\af31506\loch\f2 o\tab}2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168 of 10x diluted appropriate reverse primer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid3040168 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168 .6 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid3040168 polymerase}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2884371 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 Thermocycler conditions for largest size group (nifHDK and nifEN):
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 98}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for 2 minutes initially
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}Cycle the following 35 times:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid2884371 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl2\adjustright\rin0\lin2160\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 98}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for 25 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid2884371 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}56}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for 35 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid2884371 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}72}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for 2 minutes and 30 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 72}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for 10 minutes (final extension time)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}Hold at 10\'b0C
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2884371 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\adjustright\rin0\lin720\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 Thermocycler conditions for smallest size group:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 98}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for 2 minutes initially
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}Cycle the following 35 times:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid2884371 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl2\adjustright\rin0\lin2160\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 98}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266 for 20}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid2430266 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266 55}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266 for 25}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 seconds
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid2884371 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}72}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266 25 seconds}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls9\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 72}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid5784579 \'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 for 10 minutes (final extension time)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2884371 \hich\af2\dbch\af31506\loch\f2 o\tab}Hold at 10\'b0C
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2430266 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266 Prepare gels for PCR products with 1% agarose
\par Dilute concentrated DNA ladder (.5 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266 g/}{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid6375002 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid6375002 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266 1kb plus):
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2430266 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls13\adjustright\rin0\lin720\itap0\pararsid2430266\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2430266 Combine:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2430266\charrsid2430266 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls13\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2430266\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 40 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 L DNA}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2430266\charrsid2430266 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 40 }{\rtlch\fcs1
\ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 L water}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2430266
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2430266\charrsid2430266 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 40 }{\rtlch\fcs1
\ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 L DNA loading dye }{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2430266
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2430266\charrsid2430266 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls13\adjustright\rin0\lin720\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2430266\charrsid2430266 Pipette in and out to mix}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2784689 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689 Add 12 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689 of DNA loading dye to each 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689
PCR reaction tube
\par Run gels, cut out bands
\par Purify the PCR product, using a kit:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls23\adjustright\rin0\lin720\itap0\pararsid2784689\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2784689 Spin down the bands in vials
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add BNL buffer to cover the gel
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Place on thermomixer at 65\'b0C for about 10 minutes until the agarose is no longer solid
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Split into 2 tubes per PCR product
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 150 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689 of isopropanol and invert to mix
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Place one spin column in a collection tube for each DNA gel mixture
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 750 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689
of DNA mixture to the column and centrifuge at 13000 rpm for 1 minute; discard the flow-through and place back in same collection tube
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Repeat the previous step with addition DNA mix until all the mix has run through the column
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 700 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689
of washing buffer to the column and spin at 13000 rpm for 1 minute; discard the flow through and replace in collection tube
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Repeat previous step with additional 700 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689
of washing buffer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Centrifuge for 2 minutes at 13,000 rpm
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Place columns in thermomixer for ~3 minutes
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Place columns into a clean 1.5 mL microcentrifuge tube and apply 30 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689
of water to the center of the column to elute
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Incubate at room temperature for 1 minute
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Centrifuge for 1 minute at 13,000 rpm
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2784689 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls23\adjustright\rin0\lin720\itap0\pararsid2884371\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689 Measure concentrations on nanodrop with 1.5 }{\rtlch\fcs1 \ab\af1
\ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2784689
of each sample}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371\charrsid2784689
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid2884371 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2884371 6/11/15
\par }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 Perform a restriction enzyme digest of PCR products and of the plasmid backbone using 20 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 reactions:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid8921509 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls14\adjustright\rin0\lin720\itap0\pararsid8921509\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid8921509 Recipe specifications:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8921509 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls14\ilvl1\adjustright\rin0\lin1440\itap0\pararsid8921509\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 Use 2 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509
10x buffer with dye
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8921509 \hich\af2\dbch\af31506\loch\f2 o\tab}Enough volume of PCR product to provide 500 ng if possible (300 is enough if the concentration is too low)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8921509 \hich\af2\dbch\af31506\loch\f2 o\tab}1 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 of each restriction enzyme (XhoI and EcoRI as appropriate)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8921509 \hich\af2\dbch\af31506\loch\f2 o\tab}Water to reach 20 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266
\'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 total volume
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid8921509 \hich\af2\dbch\af31506\loch\f2 o\tab}Order of addition: water, buffer, DNA, enzyme
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid8921509 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls14\adjustright\rin0\lin720\itap0\pararsid8921509\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 Centrifuge for 1 minute; incubate at 37\'b0C for ~3 hours
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid8921509 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 Redo PCR for the gene that did not have a band, using the same recipe and conditions as previously used
\par Prepare two gels:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid8921509 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls15\adjustright\rin0\lin720\itap0\pararsid8921509\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid8921509 1 for restriction digest products with 1% agarose
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid13704892 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls15\ilvl1\adjustright\rin0\lin1440\itap0\pararsid13704892\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892 Add ladder and plasmid digest
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid13704892 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls15\ilvl2\adjustright\rin0\lin2160\itap0\pararsid13704892\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892 Can differentiate between digested
and undigested (or linearized) plasmid, but other products have too small of a difference between digested and undigested to tell
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid8921509 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls15\adjustright\rin0\lin720\itap0\pararsid8921509\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid8921509 1 for PCR products of the small gene for which PCR is being redone
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid15010177 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls15\ilvl1\adjustright\rin0\lin1440\itap0\pararsid15010177\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15010177 Make 2% agarose (helpful for smaller bands):
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid15010177 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}}\pard \ltrpar\s15\ql \fi-360\li2160\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls15\ilvl2\adjustright\rin0\lin2160\itap0\pararsid15010177\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid15010177 Weigh 1 g agarose
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid15010177 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}Add 50 mL TAE buffer
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f10\fs22\insrsid15010177 \loch\af10\dbch\af31506\hich\f10 \'a7\tab}Microwave until all agarose is dissolved
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid8921509 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892 Purify the DNA fragments from the other digests (non-plasmid) using the small kit to elute at higher concentration:}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid8921509
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid13704892 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls16\adjustright\rin0\lin720\itap0\pararsid13704892\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892 Add 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid13704892\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid13704892\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892 of DNA binding buffer to each sample
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid13704892 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls16\ilvl1\adjustright\rin0\lin1440\itap0\pararsid13704892\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892 20 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid13704892\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892 }{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753 digest reaction x 5 (multiplier for DNA fragments, according to kit) = 10 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266
\'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753 to add}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid13704892
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid14615753 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls16\adjustright\rin0\lin720\itap0\pararsid14615753\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753 Pipette in and out to mix
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid14615753 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Transfer mixture to a spin column in a labeled collection tube
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid14615753 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Centrifuge for 30 seconds; discard the flow-through
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid14615753 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 200 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753 of DNA wash buffer to the column. Centrifuge for 30 seconds. Repeat the wash step
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid14615753 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Add 10 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266 \'ec}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753 water to the column matrix and incubate at room temperature for ~2 minutes
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid14615753 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Transfer the column to a 1.5 mL microcentrifuge tube and centrifuge for 30 seconds to elute the DNA
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid14615753 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033
{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753 Quantify the eluate with the nanodrop using 1 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266 \'ec}{\rtlch\fcs1 \af1
\ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid14615753 of each sample
\par }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5314342 Run gels for plasmid}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 digest}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5314342
and PCR product
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid5314342 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls17\adjustright\rin0\lin720\itap0\pararsid5314342\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid5314342 Plasmid:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5314342 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls17\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5314342\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5314342
saw bands for fragment, backbone with fragment cut out, and linearized fragment (hoped to see only the first two)
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5314342 \hich\af2\dbch\af31506\loch\f2 o\tab}cut out only the band of the backbone with fragment cut out and purified
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5314342 \hich\af2\dbch\af31506\loch\f2 o\tab}took concentration on nanodrop
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid5314342 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls17\adjustright\rin0\lin720\itap0\pararsid5314342\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5314342 PCR product:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5314342 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls17\ilvl1\adjustright\rin0\lin1440\itap0\pararsid5314342\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5314342 Cut and purified band
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid5314342 \hich\af2\dbch\af31506\loch\f2 o\tab}Took concentration on nanodrop
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid5314342 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 Purify the DNA fragments from non-plasmid digests using a kid for high concentration:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls19\adjustright\rin0\lin720\itap0\pararsid2190281\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2190281 Add 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2430266 L}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 of DNA binding buffer to each sample
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls19\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2190281\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 20 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
sample x 5 (multiplier for DNA fragments, according to kit) = 100 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls19\adjustright\rin0\lin720\itap0\pararsid2190281\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 Pipette }{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 in and out to mix}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281\charrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281
Transfer the mixture to a spin column in a labeled collection tube}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281\charrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281
Centrifuge for 30 seconds; discard the flow-through}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281\charrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 Add 200 }{
\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281
L of DNA wash buffer to the column. Centrifuge for 30 seconds}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Repeat }{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 the wash step}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281\charrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 Ad}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 d}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 10 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 L water to the column matrix and incubate at room temperature for ~2 minutes}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281\charrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281
Transfer the column to a 1.5 mL microcentrifuge tube and centrifuge for 30 seconds to elute the DNA}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281\charrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281
Quantify concentrations with the nanodrop\emdash 1 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281
L of each sample}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281\charrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 Store at }{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 -20\'b0C}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281
\par }\pard\plain \ltrpar\ql \li0\ri0\sa160\sl259\slmult1\widctlpar\wrapdefault\aspalpha\aspnum\faauto\adjustright\rin0\lin0\itap0\pararsid5314342 \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid5314342 Set up 7 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid5314342\charrsid2430266 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid5314342\charrsid2430266 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 ligation reactions for the}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6761215
digestion products that were digested by both enzymes:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard\plain \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls18\adjustright\rin0\lin720\itap0\pararsid6761215\contextualspace \rtlch\fcs1 \af31507\afs22\alang1025 \ltrch\fcs0 \f31506\fs22\lang1033\langfe1033\cgrid\langnp1033\langfenp1033 {\rtlch\fcs1 \af1 \ltrch\fcs0
\chshdng0\chcfpat0\chcbpat8\insrsid2190281 Recipe conditions:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls18\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2190281\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 .7 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 buffer}{
\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid6761215
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 1 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0
\f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 \'ec}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 enzyme
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}.7 }{\rtlch\fcs1 \ab\af1 \ltrch\fcs0 \f31571\cf1\chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 \'ec}{\rtlch\fcs1
\af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281\charrsid2190281 L}{\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 digested plasmid
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}5x more insert DNA than plasmid DNA
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}Water to final volume
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}}\pard \ltrpar\s15\ql \fi-360\li720\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls18\adjustright\rin0\lin720\itap0\pararsid6761215\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 Order of addition: water, DNA, buffer, enzyme
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Set up an additional ligation reaction for negative control: see if the plasmid will ligate to itself with no enzyme
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af1\afs22 \ltrch\fcs0 \f3\fs22\insrsid2190281 \loch\af3\dbch\af31506\hich\f3 \'b7\tab}Cyclic ligation conditions:
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}}\pard \ltrpar\s15\ql \fi-360\li1440\ri0\sa160\sl259\slmult1
\widctlpar\wrapdefault\aspalpha\aspnum\faauto\ls18\ilvl1\adjustright\rin0\lin1440\itap0\pararsid2190281\contextualspace {\rtlch\fcs1 \af1 \ltrch\fcs0 \chshdng0\chcfpat0\chcbpat8\insrsid2190281 37\'b0C for 3 minutes
\par {\listtext\pard\plain\ltrpar \s15 \rtlch\fcs1 \af2\afs22 \ltrch\fcs0 \f2\fs22\insrsid2190281 \hich\af2\dbch\af31506\loch\f2 o\tab}22\'b0C for 3 minutes