Citrus relatives exhibit natural variation in perception and response magnitude to microbial features

Jessica Trinh^1*, Tianrun Li^1*, Jessica Franco^1*, Tania Toruño^1*, Danielle M. Stevens^1,3*, Shree Thapa¹, Justin Wong¹, Rebeca Pineda², Emmanuel Ávila de Dios², Tracy L. Kahn², Danelle K. Seymour², Chandrika Ramadugu², Gitta Coaker#¹

¹Department of Plant Pathology, University of California, Davis, USA
² Department of Botany and Plant Sciences, University of California, Riverside, CA, US A
³Integrative Genetics and Genomics Graduate Program, University of California, Davis, USA

# Corresponding author
* These authors contributed equally to the work.

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Purpose:

The scripts in this repository are for processing and ploting ROS data collected from diverse citrus species and relative after treatment with different MAMPs and mining, analyzing, and plotting chitin perceving LYK5 and CERK1 homologs.

There is one main script that controls several scripts in this repository. To run each script, open Master_Script.R and run through each script (numbered 01 through 10) as well as the command line operations.

To make final figure:

For the figures made here, some minor asthetic changes were made in a vector based software. These changes are noted in the scripts which make the preliminary 'final' figure and such figure can be found in the Final_Figures folder.

Any questions, feel free to contact me (Danielle Stevens) at [email protected].