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b/content/linkml/data_test/AnVILBioCoreFake - AnVILBioSample.tsv @@ -0,0 +1,7 @@ +biosample_id anatomical_site apriori_cell_type biosample_type disease donor_age_at_collection_unit donor_age_at_collection_lower_bound donor_age_at_collection_upper_bound donor_id_fk +1 Brain Neuron Tissue Dementia years 10 28 1 +2 Heart Cardiomyocyte Tissue CAD years 56 71 1 +3 Liver Hepatocyte Tissue Cirrhosis years 66 84 1 +4 Lung Alveolar cell Tissue COPD years 62 87 2 +5 Kidney Nephron Tissue CKD years 77 97 2 +6 Skin Keratinocyte Tissue Psoriasis years 91 97 2 \ No newline at end of file diff --git a/content/linkml/data_test/AnVILBioCoreFake - AnVILDonor.tsv b/content/linkml/data_test/AnVILBioCoreFake - AnVILDonor.tsv new file mode 100644 index 0000000..7422ba6 --- /dev/null +++ b/content/linkml/data_test/AnVILBioCoreFake - AnVILDonor.tsv @@ -0,0 +1,3 @@ +donor_id organism_type phenotypic_sex reported_ethnicity genetic_ancestry human_phenotype +1 Homo sapiens male Caucasian European HP:0001250 +2 Homo sapiens female Asian East Asian HP:0004322 \ No newline at end of file diff --git a/content/linkml/data_test/AnVILBioCoreFake - AnVILFile.tsv b/content/linkml/data_test/AnVILBioCoreFake - AnVILFile.tsv new file mode 100644 index 0000000..fae56c4 --- /dev/null +++ b/content/linkml/data_test/AnVILBioCoreFake - AnVILFile.tsv @@ -0,0 +1,7 @@ +file_id data_modality file_format file_size file_md5sum file_name file_ref reference_assembly biosample_id_fk +1 Genomic FASTQ 2 GB d41d8cd98f00b204e9800998ecf8427e file1.fastq hg19 GRCh37 1 +2 Transcriptomic BAM 1.5 GB 098f6bcd4621d373cade4e832627b4f6 file2.bam hg38 GRCh38 2 +3 Epigenomic BED 500 MB 5d41402abc4b2a76b9719d911017c592 file3.bed hg19 GRCh37 3 +4 Genomic VCF 3 GB a4b7b34a0d4a8b3a0f5b4f5a5c87b788 file4.vcf hg38 GRCh38 4 +5 Transcriptomic GTF 1 GB 8277e0910d750195b448797616e091ad file5.gtf hg19 GRCh37 5 +6 Epigenomic BIGWIG 2.5 GB 6dcd4ce23d88e2ee95838f7b014b628e file6.bigwig hg38 GRCh38 6 \ No newline at end of file