add age at death

DataBiosphere · May 14, 2024 · 9fec8b7 · 9fec8b7
1 parent 118e17c
commit 9fec8b7
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Showing 2 changed files with 9 additions and 1 deletion.
diff --git a/content/linkml/AnVILBioCoreMinimal.linkml.yaml b/content/linkml/AnVILBioCoreMinimal.linkml.yaml
@@ -32,6 +32,7 @@ classes:
       - reported_ethnicity
       - genetic_ancestry
       - human_phenotype
+      - age_at_death
   AnVILFile:
     description: Information for files associated with the study.
     slots:
@@ -144,6 +145,12 @@ slots: ## ids are unique identifiers for each entity or explicitly defined forei
     aliases: usesReferenceAssembly
     description: A reference to the collection of sequences taken as the standard for a given organism. May be defined by https://www.ncbi.nlm.nih.gov/grc.
     multivalued: true
+  age_at_death:
+    aliases: hasAgeAtDeath
+    description: A reference to the Age of the Donor at time of death. The units are assumed to be years.
+    slot_uri: https://datamodel.terra.bio/TerraCore#hasAgeAtDeath
+    multivalued: false
+    datatype: integer
 
   # fields for enumerations
   human_phenotype:

diff --git a/content/linkml/BioCoreFields.yaml b/content/linkml/BioCoreFields.yaml
@@ -31,9 +31,10 @@ slots:
     multivalued: true
   age_at_death:
     aliases: hasAgeAtDeath
-    description: A reference to the Age of the Donor at time of death.
+    description: A reference to the Age of the Donor at time of death. The units are assumed to be years.
     slot_uri: https://datamodel.terra.bio/TerraCore#hasAgeAtDeath
     multivalued: false
+    datatype: integer
   age_at_diagnosis:
     aliases: hasAgeAtDiagnosis
     description: A reference to the Age of the Donor at the point in time that diagnosis was made.