.dockstore.yml

version: 1.2
workflows:
   - subclass: WDL
     primaryDescriptorPath: /variant-caller/variant-caller-wdl/topmed_freeze3_calling.wdl
     testParameterFiles:
         - /variant-caller/variant-caller-wdl/topmed_freeze3_calling.json
     name: UM_variant_caller_wdl
   - subclass: WDL
     primaryDescriptorPath: /aligner/u_of_michigan_aligner/u_of_michigan_aligner.wdl
     testParameterFiles:
         - /aligner/u_of_michigan_aligner/u_of_michigan_aligner.json
         - /aligner/u_of_michigan_aligner/u_of_michigan_aligner_gs_urls.json
     name: UM_aligner_wdl
   - subclass: WDL
     primaryDescriptorPath: /aligner/functional-equivalence-wdl/FunctionalEquivalence.wdl
     testParameterFiles:
         - /aligner/functional-equivalence-wdl/FunctionalEquivalence.json
     name: CCDG_aligner_functional_equivalent_wdl
   - subclass: CWL
     primaryDescriptorPath: /aligner/sbg-alignment-cwl/topmed-alignment.cwl
     testParameterFiles:
         - /aligner/sbg-alignment-cwl/topmed-alignment.sample.json
     name: UM_aligner_cwl
   - subclass: CWL
     primaryDescriptorPath: /aligner/topmed-cwl/workflow/alignment_workflow.cwl
     name: CCDG_aligner_functional_equivalent_cwl
   - subclass: CWL
     primaryDescriptorPath: /variant-caller/sbg-variant-caller-cwl/topmed_freeze3_calling.json
     testParameterFiles:
         - /variant-caller/sbg-variant-caller-cwl/topmed_freeze3_calling.json
     name: UM_variant_caller_cwl
   - subclass: CWL
     primaryDescriptorPath: /vcf-comparator/ConcordanceTestWorkflow.cwl
     name: gatk-vcf-comparator