diff --git a/Manifest.toml b/Manifest.toml index 7cd42485d..985c6306f 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -5,9 +5,14 @@ manifest_format = "2.0" project_hash = "bd4c7b1f5d210b9878847b2e4ee3ae8220c5f1c7" [[deps.ADTypes]] -git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.7" +version = "1.2.1" +weakdeps = ["ChainRulesCore", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" @@ -90,9 +95,9 @@ version = "7.10.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb" +git-tree-sha1 = "29649b61e0313db0a7ad5ecf41210e4e85aea234" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.9.2" +version = "1.9.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -147,9 +152,9 @@ version = "1.0.8+1" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1" +git-tree-sha1 = "585a387a490f1c4bd88be67eea15b93da5e85db7" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.4" +version = "0.2.5" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -225,9 +230,9 @@ version = "1.1.1+0" [[deps.ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "dded0a186977e5a4a12b1f1224f73956e4e8e90a" +git-tree-sha1 = "85d7d0c192e8eec909799737fe590f7d7ff0a6eb" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.11" +version = "0.15.13" [deps.ComponentArrays.extensions] ComponentArraysAdaptExt = "Adapt" @@ -367,11 +372,12 @@ version = "0.4.2" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "c8b0bdee28a1addddb7ab939365fe6543d7d2d0d" +git-tree-sha1 = "03b9555f4c3a7c2f530bb1ae13e85719c632f74e" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.149.2" +version = "6.151.1" [deps.DiffEqBase.extensions] + DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] @@ -384,6 +390,7 @@ version = "6.149.2" DiffEqBaseUnitfulExt = "Unitful" [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" @@ -443,9 +450,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "1bc328eec34ffd80357f84a84bb30e4374e9bd60" +git-tree-sha1 = "18394bc78ac2814ff38fe5e0c9dc2cd171e2810c" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.6" +version = "0.7.2" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -463,9 +470,9 @@ uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" [[deps.ExproniconLite]] -git-tree-sha1 = "5552cf384e4577c5dd2db57d7086a4a41747dbb9" +git-tree-sha1 = "6091a6fc0f16639f43d7f78fee225ba365712612" uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.6" +version = "0.10.8" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] @@ -682,10 +689,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "5ea6acdd53a51d897672edb694e3cc2912f3f8a7" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] +git-tree-sha1 = "bdbe8222d2f5703ad6a7019277d149ec6d78c301" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.46" +version = "0.4.48" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -711,9 +718,9 @@ weakdeps = ["ArrowTypes"] [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] -git-tree-sha1 = "07385c772da34d91fc55d6c704b6224302082ba0" +git-tree-sha1 = "28f9313ba6603e0d2850fc3eae617e769c99bf83" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.21.1" +version = "1.22.1" [deps.JuMP.extensions] JuMPDimensionalDataExt = "DimensionalData" @@ -815,9 +822,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "c55172df0d19b34db93c410cfcd79dbc3e52ba6f" +git-tree-sha1 = "efd815eaa56c0ffdf86581df5aaefb7e901323a0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.29.1" +version = "2.30.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -888,9 +895,9 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 = "31e27f0b0bf0df3e3e951bfcc43fe8c730a219f6" +git-tree-sha1 = "c6a36b22d2cca0e1a903f00f600991f97bf5f426" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" -version = "2.4.5" +version = "2.4.6" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1008,9 +1015,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "4891b745bd621f88aac661f2504d014931b443ba" +git-tree-sha1 = "3939ebffebff79db0442103b6d3a5e8c50cbf43c" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.10.0" +version = "3.12.0" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -1069,10 +1076,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "cd8c4fb1cc88e65e27f92c7e714afc430cd1debc" +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "b2cd04c49e8c7c6f705b527898fc843c3aa90605" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.75.0" +version = "6.78.0" [[deps.OteraEngine]] deps = ["Markdown", "Pkg", "TOML"] @@ -1111,9 +1118,9 @@ version = "1.10.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "2ba5f33cbb51a85ef58a850749492b08f9bf2193" +git-tree-sha1 = "b3e2bae88cf07baf0a051fe09666b8ef97aefe93" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.13" +version = "0.7.14" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1181,9 +1188,9 @@ uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.ReTestItems]] deps = ["Dates", "Logging", "LoggingExtras", "Pkg", "Serialization", "Sockets", "Test", "TestEnv"] -git-tree-sha1 = "32138ef9f7205330693b0e8e366370c470b2285d" +git-tree-sha1 = "276cb2fc9c4de5ea62fd50150d9089ab5a40781f" uuid = "817f1d60-ba6b-4fd5-9520-3cf149f6a823" -version = "1.23.1" +version = "1.24.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1193,9 +1200,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" +git-tree-sha1 = "758bc86b90e9fee2edc4af2a750b0d3f2d5c02c5" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.16.0" +version = "3.19.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1279,15 +1286,15 @@ version = "1.6.0" [[deps.SQLite_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "75e28667a36b5650b5cc4baa266c5760c3672275" +git-tree-sha1 = "004fffbe2711abdc7263a980bbb1af9620781dd9" uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8" -version = "3.45.0+0" +version = "3.45.3+0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" +git-tree-sha1 = "265f1a7a804d8093fa0b17e33e45373a77e56ca5" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.36.1" +version = "2.38.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1315,9 +1322,9 @@ uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" [[deps.SciMLStructures]] -git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +git-tree-sha1 = "d778a74df2f64059c38453b34abad1953b2b8722" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.1.0" +version = "1.2.0" [[deps.Scratch]] deps = ["Dates"] @@ -1327,9 +1334,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" +git-tree-sha1 = "90b4f68892337554d31cdcdbe19e48989f26c7e6" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.1" +version = "1.4.3" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1399,9 +1406,9 @@ version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477" +git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.18.0" +version = "2.19.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1452,9 +1459,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" +git-tree-sha1 = "9ae599cd7529cfce7fea36cf00a62cfc56f0f37c" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.3" +version = "1.9.4" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1579,9 +1586,9 @@ weakdeps = ["RecipesBase"] [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" +git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" +version = "0.5.24" [[deps.TranscodingStreams]] git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" @@ -1645,10 +1652,10 @@ uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "1.4.2" [[deps.ZMQ]] -deps = ["FileWatching", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "356d2bdcc0bce90aabee1d1c0f6d6f301eda8f77" +deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] +git-tree-sha1 = "8ac0d6e982660047f4ec5ae462acf4b92260f4b3" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.2.2" +version = "1.2.3" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"]