From 30bc2d541d9f7d8e9287d31acf547947960da950 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 22 Oct 2024 09:21:41 +0200 Subject: [PATCH] Switch to Julia 1.11.1 (#1914) Also updates the Manifest. Bumps minimum required SparseConnectivityTracer version to the latest, which is needed on 1.11. https://julialang.org/blog/2024/10/julia-1.11-highlights/ https://github.com/JuliaLang/julia/blob/v1.11.1/NEWS.md This does not yet start using 1.11 features so it leaves the julia compat on 1.10 for now. --- Manifest.toml | 262 ++++++++++++++++++++++++++++++---------------- Project.toml | 3 + core/Project.toml | 2 +- pixi.toml | 2 +- 4 files changed, 176 insertions(+), 93 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index fe3809ebe..f2ca88832 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.5" +julia_version = "1.11.1" manifest_format = "2.0" project_hash = "0257f2772e4bfed0b6316b6871c4495978c173b4" @@ -61,7 +61,7 @@ version = "2.3.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -123,9 +123,11 @@ version = "2.3.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BasicModelInterface]] git-tree-sha1 = "0e2855d28cc3983a9edf4bee18478b020178a43f" @@ -152,9 +154,9 @@ version = "0.1.6" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" +version = "1.0.8+2" [[deps.CPUSummary]] deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] @@ -204,9 +206,9 @@ version = "0.7.6" [[deps.CodecZstd]] deps = ["TranscodingStreams", "Zstd_jll"] -git-tree-sha1 = "5e41a52bec3b0881a7eb54f5391b779994504186" +git-tree-sha1 = "d0073f473757f0d39ac9707f1eb03b431573cbd8" uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" -version = "0.8.5" +version = "0.8.6" [[deps.CommonSolve]] git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" @@ -376,12 +378,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "ada2a9faba0e365dca3cc456b5eca94cf3887ac3" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "f8eefbb7e910f59087c4bb09ce670f235758ee4a" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.156.1" +version = "6.158.3" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -430,10 +433,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" [[deps.DifferentiationInterface]] -deps = ["ADTypes", "Compat", "LinearAlgebra", "PackageExtensionCompat"] -git-tree-sha1 = "a1cba54a8fb4922d2920d89b0c0ee6b8a37984ec" +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "16611777adf4a818f18c33210895947814180964" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.3" +version = "0.6.16" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -448,6 +451,7 @@ version = "0.6.3" DifferentiationInterfaceReverseDiffExt = "ReverseDiff" DifferentiationInterfaceSparseArraysExt = "SparseArrays" DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" DifferentiationInterfaceSymbolicsExt = "Symbolics" DifferentiationInterfaceTrackerExt = "Tracker" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] @@ -465,6 +469,7 @@ version = "0.6.3" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -477,6 +482,7 @@ version = "0.1.6" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -536,14 +542,36 @@ git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" uuid = "29a986be-02c6-4525-aec4-84b980013641" version = "2.0.4" +[[deps.FastPower]] +git-tree-sha1 = "46aee43f62bc2bc06a74e2d668ffeea0a2689c93" +uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" +version = "1.1.0" + + [deps.FastPower.extensions] + FastPowerEnzymeExt = "Enzyme" + FastPowerForwardDiffExt = "ForwardDiff" + FastPowerMeasurementsExt = "Measurements" + FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerReverseDiffExt = "ReverseDiff" + FastPowerTrackerExt = "Tracker" + + [deps.FastPower.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.3" +version = "1.16.4" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -567,19 +595,21 @@ uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" version = "1.4.1" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"] -git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "b10bdafd1647f57ace3885143936749d61638c3b" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.24.0" +version = "2.26.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" FiniteDiffStaticArraysExt = "StaticArrays" [deps.FiniteDiff.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.ForwardDiff]] @@ -612,6 +642,7 @@ version = "0.4.12" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -632,9 +663,9 @@ version = "1.12.0" [[deps.HiGHS]] deps = ["HiGHS_jll", "MathOptInterface", "PrecompileTools", "SparseArrays"] -git-tree-sha1 = "3a7f13068f77fa54edd9589f762c600a22679bf7" +git-tree-sha1 = "555967d9fbcc5adec5362d6fc953dd11eb910250" uuid = "87dc4568-4c63-4d18-b0c0-bb2238e4078b" -version = "1.9.3" +version = "1.10.0" [[deps.HiGHS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -695,6 +726,7 @@ version = "2024.2.1+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.InverseFunctions]] git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" @@ -734,9 +766,9 @@ version = "0.4.53" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "f389674c99bfcde17dc57454011aa44d5a260a40" +git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.6.0" +version = "1.6.1" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -746,9 +778,9 @@ version = "0.21.4" [[deps.JSON3]] deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] -git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b" +git-tree-sha1 = "1d322381ef7b087548321d3f878cb4c9bd8f8f9b" uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.14.0" +version = "1.14.1" weakdeps = ["ArrowTypes"] [deps.JSON3.extensions] @@ -756,9 +788,9 @@ weakdeps = ["ArrowTypes"] [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] -git-tree-sha1 = "c95f443d4641b128d626a429b51d5185050135b5" +git-tree-sha1 = "c91f872c6150cf1471f9cb279f5e0dc09423bdcf" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.23.2" +version = "1.23.3" [deps.JuMP.extensions] JuMPDimensionalDataExt = "DimensionalData" @@ -780,14 +812,14 @@ version = "0.6.0" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "267dad6b4b7b5d529c76d40ff48d33f7e94cb834" +git-tree-sha1 = "71dd823bf0a5aaa8264e1143b96a0baa631f4ce0" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.6" +version = "0.9.7" [[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" +version = "1.4.0" [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] @@ -816,6 +848,7 @@ version = "2.2.1" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -841,16 +874,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -859,6 +893,17 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" + +[[deps.LineSearch]] +deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] +git-tree-sha1 = "97d502765cc5cf3a722120f50da03c2474efce04" +uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" +version = "0.1.4" +weakdeps = ["LineSearches"] + + [deps.LineSearch.extensions] + LineSearchLineSearchesExt = "LineSearches" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] @@ -869,12 +914,13 @@ version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "8941ad4bdd83768359801982e143008349b1a827" +git-tree-sha1 = "ddb60aabc5efb0670c7ddde5fedf7ab44520a3e6" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.35.0" +version = "2.36.1" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -924,6 +970,7 @@ version = "0.3.28" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -944,9 +991,9 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [[deps.LoweredCodeUtils]] deps = ["JuliaInterpreter"] -git-tree-sha1 = "c2b5e92eaf5101404a58ce9c6083d595472361d6" +git-tree-sha1 = "260dc274c1bc2cb839e758588c63d9c8b5e639d1" uuid = "6f1432cf-f94c-5a45-995e-cdbf5db27b0b" -version = "3.0.2" +version = "3.0.5" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -979,6 +1026,7 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MarkdownTables]] deps = ["ArgCheck", "DisplayAs", "DocStringExtensions", "Tables"] @@ -988,9 +1036,9 @@ version = "1.1.0" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "5b246fca5420ae176d65ed43a2d0ee5897775216" +git-tree-sha1 = "c7fff4fbc415a6833988efbda7621039af2a5f36" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.31.2" +version = "1.32.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1011,7 +1059,7 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.MetaGraphsNext]] deps = ["Graphs", "JLD2", "SimpleTraits"] @@ -1027,6 +1075,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.Mocking]] deps = ["Compat", "ExprTools"] @@ -1036,7 +1085,7 @@ version = "0.8.1" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1045,9 +1094,9 @@ version = "0.2.4" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "3eba928678787843e504c153a9b8e80d7d73ab17" +git-tree-sha1 = "90077f1e79de8c9c7c8a90644494411111f4e07b" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.5.0" +version = "1.5.2" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1066,10 +1115,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "bcd8812e751326ff1d4b2dd50764b93df51f143b" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearch", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "4d8944f32db2b07a2bdf8477e878bcb9c9ea2308" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.14.0" +version = "3.15.1" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -1081,8 +1130,6 @@ version = "3.14.0" NonlinearSolveNLsolveExt = "NLsolve" NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSymbolicsExt = "Symbolics" - NonlinearSolveZygoteExt = "Zygote" [deps.NonlinearSolve.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" @@ -1094,8 +1141,6 @@ version = "3.14.0" NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.OffsetArrays]] git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" @@ -1109,7 +1154,7 @@ weakdeps = ["Adapt"] [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1134,10 +1179,10 @@ uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" version = "1.1.2" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "TruncatedStacktraces"] -git-tree-sha1 = "5595eb94d0dd3cde2f5cf456394a1e0a61237e95" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "TruncatedStacktraces"] +git-tree-sha1 = "1175717a62ab21736a8f5d0d2531d2a6ad3b9e74" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.6.0" +version = "1.9.0" weakdeps = ["EnzymeCore"] [deps.OrdinaryDiffEqCore.extensions] @@ -1181,15 +1226,15 @@ version = "1.1.0" [[deps.OteraEngine]] deps = ["Markdown", "Pkg", "TOML"] -git-tree-sha1 = "f597212cd7e985f68db46f617aaf71b5f89eaa03" +git-tree-sha1 = "fd00935c531394ff30774cf8f7c89618597dd321" uuid = "b2d7f28f-acd6-4007-8b26-bc27716e5513" -version = "0.5.5" +version = "0.5.6" [[deps.PackageCompiler]] deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "48d4429862157ad5500c4f61444db1b8c32e0a2b" +git-tree-sha1 = "f26a9bf5c7fb4bf00d9499f664742675d5e78d3a" uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d" -version = "2.1.17" +version = "2.1.20" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1210,9 +1255,13 @@ uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.8.1" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] @@ -1265,10 +1314,11 @@ version = "2.4.0" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] @@ -1277,12 +1327,14 @@ uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" version = "0.1.4" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1341,9 +1393,9 @@ version = "1.3.0" [[deps.Revise]] deps = ["CodeTracking", "Distributed", "FileWatching", "JuliaInterpreter", "LibGit2", "LoweredCodeUtils", "OrderedCollections", "REPL", "Requires", "UUIDs", "Unicode"] -git-tree-sha1 = "0a20a01fbb3a9531f3325a94b6dcf95c404a1658" +git-tree-sha1 = "7f4228017b83c66bd6aa4fddeb170ce487e53bc7" uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" -version = "3.6.0" +version = "3.6.2" [[deps.Ribasim]] deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "DiffEqBase", "DiffEqCallbacks", "EnumX", "FiniteDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqTsit5", "PreallocationTools", "SQLite", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "StructArrays", "Tables", "TerminalLoggers", "TranscodingStreams"] @@ -1392,10 +1444,10 @@ uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8" version = "3.45.3+0" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "885904799812ed88a607c03b38e9c3a4a5b08853" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "26fea1911818cd480400f1a2b7f6b32c3cc3836a" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.55.0" +version = "2.56.4" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1416,11 +1468,17 @@ version = "2.55.0" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.SciMLJacobianOperators]] +deps = ["ADTypes", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] +git-tree-sha1 = "991d2a8900e687e2c693d587daa739c8fda01366" +uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" +version = "0.1.0" + [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "e39c5f217f9aca640c8e27ab21acf557a3967db5" +git-tree-sha1 = "ef388ca9e4921ec5614ce714f8aa59a5cd33d867" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.10" +version = "0.3.11" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -1447,6 +1505,7 @@ version = "1.4.5" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -1457,6 +1516,7 @@ version = "1.1.1" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] @@ -1489,6 +1549,7 @@ version = "1.1.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SoftGlobalScope]] deps = ["REPL"] @@ -1505,13 +1566,13 @@ version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] -deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "Requires", "SparseArrays"] -git-tree-sha1 = "d60da13a3f752dd5f3cc7f25d03621b243c98614" +deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "6914df6005bab9940e2a96879a97a43e1fb1ce78" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.5" +version = "0.6.8" [deps.SparseConnectivityTracer.extensions] SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" @@ -1528,10 +1589,10 @@ version = "0.6.5" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "7db12cef226aaa8ca730040c9c35e32b86a69b83" +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "b906758c107b049b6b71599b9f928d9b14e5554a" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.22.0" +version = "2.23.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1547,6 +1608,18 @@ version = "2.22.0" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "ccc32032d8f6790ad198c99fb8ef20d8100a0de4" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.4.7" + + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsColorsExt = "Colors" + + [deps.SparseMatrixColorings.weakdeps] + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" @@ -1597,9 +1670,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.3" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] @@ -1632,16 +1710,20 @@ git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.11.0" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "0225f7c62f5f78db35aae6abb2e5cabe38ce578f" +git-tree-sha1 = "4bc96df5d71515b1cb86dd626915f06f4c0d46f5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.31" +version = "0.3.33" [[deps.TOML]] deps = ["Dates"] @@ -1680,6 +1762,7 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TestEnv]] deps = ["Pkg"] @@ -1716,14 +1799,14 @@ weakdeps = ["RecipesBase"] [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" +git-tree-sha1 = "3a6f063d690135f5c1ba351412c82bae4d1402bf" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.24" +version = "0.5.25" [[deps.TranscodingStreams]] -git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.2" +version = "0.11.3" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] @@ -1731,11 +1814,6 @@ git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" version = "0.2.1" -[[deps.Tricks]] -git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.9" - [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" @@ -1745,6 +1823,7 @@ version = "1.4.0" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -1753,6 +1832,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] @@ -1785,9 +1865,9 @@ version = "1.3.0" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] -git-tree-sha1 = "42f97fb27394378591666ab0e9cee369e6d0e1f9" +git-tree-sha1 = "f02ce8f0fda1ed40f4d0d59a2ad05e35e8ac9b0e" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.5+0" +version = "4.3.5+1" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -1814,7 +1894,7 @@ version = "1.0.20+1" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/Project.toml b/Project.toml index ef7bcf793..4e594a1cf 100644 --- a/Project.toml +++ b/Project.toml @@ -62,3 +62,6 @@ TerminalLoggers = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" TestEnv = "1e6cf692-eddd-4d53-88a5-2d735e33781b" TestItemRunner = "f8b46487-2199-4994-9208-9a1283c18c0a" TranscodingStreams = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" + +[sources] +Ribasim = {path = "core"} diff --git a/core/Project.toml b/core/Project.toml index fdf395970..bd85015a6 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -96,7 +96,7 @@ PreallocationTools = "0.4" SQLite = "1.5.1" SciMLBase = "2.36" SparseArrays = "1" -SparseConnectivityTracer = "0.6.3" +SparseConnectivityTracer = "0.6.8" StructArrays = "0.6.13" TOML = "1" Tables = "1" diff --git a/pixi.toml b/pixi.toml index 89afb7452..2d6af6992 100644 --- a/pixi.toml +++ b/pixi.toml @@ -20,7 +20,7 @@ test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=r [feature.dev.tasks] # Installation -install-julia = "juliaup add 1.10.5 && juliaup override unset && juliaup override set 1.10.5" +install-julia = "juliaup add 1.11.1 && juliaup override unset && juliaup override set 1.11.1" install-pre-commit = "pre-commit install" # Note that this has a Windows specific override install-ci = { depends_on = ["install-julia", "update-registry-julia"] }