diff --git a/.github/workflows/core_compat_helper.yml b/.github/workflows/core_compat_helper.yml index ac35110da..6db7c8918 100644 --- a/.github/workflows/core_compat_helper.yml +++ b/.github/workflows/core_compat_helper.yml @@ -37,7 +37,13 @@ jobs: - name: "Run CompatHelper" run: | import CompatHelper - CompatHelper.main(; subdirs=["core"]) + CompatHelper.main(; subdirs=[ + "core", + "docs", + "build/create_binaries", + "build/libribasim", + "build/ribasim_cli" + ]) shell: julia --color=yes {0} env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/.vscode/settings_template.json b/.vscode/settings_template.json index 852168c6d..bd65da885 100644 --- a/.vscode/settings_template.json +++ b/.vscode/settings_template.json @@ -2,7 +2,6 @@ "[julia]": { "editor.formatOnSave": true }, - "julia.environmentPath": "core", "notebook.formatOnSave.enabled": true, "[python]": { "editor.defaultFormatter": "charliermarsh.ruff", diff --git a/core/Manifest.toml b/Manifest.toml similarity index 84% rename from core/Manifest.toml rename to Manifest.toml index 6dfa5a16b..07619a7ee 100644 --- a/core/Manifest.toml +++ b/Manifest.toml @@ -2,13 +2,18 @@ julia_version = "1.9.3" manifest_format = "2.0" -project_hash = "c63b237aec6a6bf6314284b2b07a94b93a9f0a36" +project_hash = "f38abc22b48e63729fc0df2250576035135df64d" [[deps.ADTypes]] git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" version = "0.2.4" +[[deps.ANSIColoredPrinters]] +git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" +uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" +version = "0.0.1" + [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -36,9 +41,9 @@ version = "0.2.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -56,12 +61,6 @@ version = "7.4.11" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - [[deps.Arrow]] deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "LoggingExtras", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"] git-tree-sha1 = "954666e252835c4cf8819ce4ffaf31073c1b7233" @@ -219,9 +218,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.Configurations]] deps = ["ExproniconLite", "OrderedCollections", "TOML"] @@ -249,6 +248,11 @@ git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" uuid = "adafc99b-e345-5852-983c-f28acb93d879" version = "0.3.1" +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + [[deps.DBInterface]] git-tree-sha1 = "9b0dc525a052b9269ccc5f7f04d5b3639c65bca5" uuid = "a10d1c49-ce27-4219-8d33-6db1a4562965" @@ -260,10 +264,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.15.0" [[deps.DataInterpolations]] -deps = ["LinearAlgebra", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"] -git-tree-sha1 = "5d8ddbe1e7e539d3c2f6ae34d32a770e722eec07" +deps = ["LinearAlgebra", "PrettyTables", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"] +git-tree-sha1 = "97b5c6115165fc9f99908cbdd2ea4c0efda0843e" uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -version = "4.4.0" +version = "4.5.0" [deps.DataInterpolations.extensions] DataInterpolationsChainRulesCoreExt = "ChainRulesCore" @@ -299,14 +303,15 @@ uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.3.25" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "36a590efdbee58b38f903ffc3b378f4a5336bc3f" +deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "de4709e30bd5490435122c4b415b90a812c23fbf" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.134.0" +version = "6.138.1" [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" - DiffEqBaseEnzymeExt = "Enzyme" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -314,9 +319,9 @@ version = "6.134.0" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" @@ -326,7 +331,6 @@ version = "6.134.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] @@ -371,6 +375,18 @@ git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.3" +[[deps.Documenter]] +deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] +git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67" +uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" +version = "0.27.25" + +[[deps.DocumenterMarkdown]] +deps = ["Documenter"] +git-tree-sha1 = "9af057a98652336e30586d8092fac06f8b28ecdc" +uuid = "997ab1e6-3595-5248-9280-8efb232c3433" +version = "0.2.2" + [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" @@ -383,9 +399,9 @@ version = "1.0.4" [[deps.EnzymeCore]] deps = ["Adapt"] -git-tree-sha1 = "d8701002a745c450c03b890f10d53636d1a8a7ea" +git-tree-sha1 = "ab81396e4e7b61f5590db02fa1c17fae4f16d7ab" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.2" +version = "0.6.3" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] @@ -493,6 +509,11 @@ git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" version = "0.5.3" +[[deps.Glob]] +git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" +uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" +version = "1.3.1" + [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" @@ -517,6 +538,12 @@ git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.16" +[[deps.IOCapture]] +deps = ["Logging", "Random"] +git-tree-sha1 = "d75853a0bdbfb1ac815478bacd89cd27b550ace6" +uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" +version = "0.2.3" + [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -575,6 +602,12 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" +[[deps.JSON3]] +deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] +git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3" +uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" +version = "1.13.2" + [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "Printf", "SnoopPrecompile", "SparseArrays"] git-tree-sha1 = "25b2fcda4d455b6f93ac753730d741340ba4a4fe" @@ -599,11 +632,16 @@ git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" version = "0.9.4" +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -660,10 +698,10 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "a563cd835c9ed5295c35a7d140e0bf0a514bb10a" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "84bdad5fb1fe03a6637ad413e0e4b7e48ac22be5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.13.0" +version = "2.16.2" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -717,10 +755,10 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.165" +version = "0.12.166" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -733,6 +771,12 @@ git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" version = "1.9.4+0" +[[deps.MKL]] +deps = ["Artifacts", "Libdl", "LinearAlgebra", "MKL_jll"] +git-tree-sha1 = "100521a1d2181cb39036ee1a6955d6b9686bb363" +uuid = "33e6dc65-8f57-5167-99aa-e5a354878fb2" +version = "0.6.1" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" @@ -756,9 +800,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "13b3d40084d04e609e0509730f05215fb2a2fba4" +git-tree-sha1 = "70ea2892b8bfffecc0387ba1a6a21192814f120c" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.21.0" +version = "1.22.0" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -812,16 +856,18 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "9203b3333c9610664de2e8cbc23cfd726663df7d" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "f400009287afedef175058e64aadf7d41f593fef" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "2.4.0" +version = "2.8.0" [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" @@ -854,9 +900,15 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" +git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.58.0" +version = "6.58.2" + +[[deps.PackageCompiler]] +deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs"] +git-tree-sha1 = "8040d4fce6697d98c679c5477e5257d39cef7623" +uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d" +version = "2.1.12" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -883,9 +935,9 @@ version = "1.9.2" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.8" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -923,6 +975,12 @@ git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.2.8" + [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -980,12 +1038,24 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" +[[deps.Ribasim]] +deps = ["Arrow", "BasicModelInterface", "CodecLz4", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "Dictionaries", "DiffEqCallbacks", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "Logging", "LoggingExtras", "OrdinaryDiffEq", "PreallocationTools", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimeZones", "TimerOutputs", "TranscodingStreams"] +path = "core" +uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" +version = "0.4.0" + [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" @@ -1003,9 +1073,9 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.39" +version = "0.6.42" [[deps.SQLite]] deps = ["DBInterface", "Random", "SQLite_jll", "Serialization", "Tables", "WeakRefStrings"] @@ -1020,12 +1090,13 @@ uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8" version = "3.43.0+0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "1c2a4e245744dd76b2eb677d3535ffad16d8b989" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "8d1bb6b4c0aa7c1bcd3bcd81e2b8c3b4f4b0733e" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.5.0" +version = "2.7.3" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" @@ -1033,6 +1104,7 @@ version = "2.5.0" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" @@ -1047,21 +1119,21 @@ version = "0.1.9" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1077,10 +1149,10 @@ deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.SimpleNonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2" +deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "69b1a53374dd14d7c165d98cb646aeb5f36f8d07" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.23" +version = "0.1.25" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveNNlibExt = "NNlib" @@ -1114,9 +1186,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" +git-tree-sha1 = "e162b74fd1ce6d371ff5c584b53e34538edb9212" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.8.0" +version = "2.11.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1193,12 +1265,24 @@ git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" version = "0.4.17" +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + [[deps.StructArrays]] deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" version = "0.6.16" +[[deps.StructTypes]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" +uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" +version = "1.10.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -1282,9 +1366,9 @@ version = "0.9.13" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" +version = "0.1.20" [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" @@ -1338,17 +1422,29 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.5+0" -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.4" +[[deps.create_binaries]] +deps = ["Artifacts", "LibGit2", "PackageCompiler", "TOML", "TimeZones"] +path = "build/create_binaries" +uuid = "3cfb6a46-05f0-43df-bb16-bf763deb14b4" +version = "0.1.0" + +[[deps.docs]] +deps = ["Configurations", "Dates", "Documenter", "DocumenterMarkdown", "InteractiveUtils", "JSON3", "Legolas", "Logging", "OrderedCollections", "Ribasim"] +path = "docs" +uuid = "8daea9ca-fc6c-4731-aa85-717fa0b706bc" +version = "0.1.0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+0" +[[deps.libribasim]] +deps = ["BasicModelInterface", "Dates", "Ribasim", "TOML"] +path = "build/libribasim" +uuid = "f319f290-633d-4573-adfe-d6d5548b6388" +version = "0.1.0" + [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" @@ -1358,3 +1454,9 @@ version = "1.48.0+0" deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+0" + +[[deps.ribasim_cli]] +deps = ["Dates", "Logging", "Ribasim", "SciMLBase", "TOML", "TerminalLoggers"] +path = "build/ribasim_cli" +uuid = "e45c999e-e944-4589-a8e6-7d0b7a60140a" +version = "0.1.0" diff --git a/Project.toml b/Project.toml new file mode 100644 index 000000000..7f78b211f --- /dev/null +++ b/Project.toml @@ -0,0 +1,10 @@ +name = "root" +authors = ["Deltares and contributors "] +description = "Meta-project used to share the Manifest of Ribasim and its dependents" + +[deps] +Ribasim = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" +create_binaries = "3cfb6a46-05f0-43df-bb16-bf763deb14b4" +docs = "8daea9ca-fc6c-4731-aa85-717fa0b706bc" +libribasim = "f319f290-633d-4573-adfe-d6d5548b6388" +ribasim_cli = "e45c999e-e944-4589-a8e6-7d0b7a60140a" diff --git a/build/create_binaries/Manifest.toml b/build/create_binaries/Manifest.toml deleted file mode 100644 index 737ac860a..000000000 --- a/build/create_binaries/Manifest.toml +++ /dev/null @@ -1,225 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "71b2262fd2a2bd6f9c0ade48d4062e051c3f39eb" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - - [deps.Compat.weakdeps] - Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" - LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.Glob]] -git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" -uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" -version = "1.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.PackageCompiler]] -deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs"] -git-tree-sha1 = "d24f0920777c64c0265e9725eb4a3ec450bc36dd" -uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d" -version = "2.1.10" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - - [deps.TimeZones.weakdeps] - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/build/create_binaries/Project.toml b/build/create_binaries/Project.toml index 92f8e2f7b..f37146fb7 100644 --- a/build/create_binaries/Project.toml +++ b/build/create_binaries/Project.toml @@ -1,3 +1,10 @@ +name = "create_binaries" +uuid = "3cfb6a46-05f0-43df-bb16-bf763deb14b4" +authors = ["Deltares and contributors "] +description = "Build Ribasim binaries with PackageCompiler" +manifest = "../../Manifest.toml" +version = "0.1.0" + [deps] Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" LibGit2 = "76f85450-5226-5b5a-8eaa-529ad045b433" diff --git a/build/create_binaries/add_metadata.jl b/build/create_binaries/add_metadata.jl index 3eb3bad89..27f3585ce 100644 --- a/build/create_binaries/add_metadata.jl +++ b/build/create_binaries/add_metadata.jl @@ -24,7 +24,7 @@ function add_metadata(project_dir, license_file, output_dir, git_repo) ) # the Manifest.toml always gives the exact version of Ribasim that was built cp( - normpath(project_dir, "Manifest.toml"), + normpath(git_repo, "Manifest.toml"), normpath(output_dir, "share/julia/Manifest.toml"); force = true, ) @@ -35,7 +35,7 @@ function add_metadata(project_dir, license_file, output_dir, git_repo) open(normpath(output_dir, "README.md"), "a") do io # since the exact Ribasim version may be hard to find in the Manifest.toml file # we can also extract that information, and add it to the README.md - manifest = TOML.parsefile(normpath(project_dir, "Manifest.toml")) + manifest = TOML.parsefile(normpath(git_repo, "Manifest.toml")) if !haskey(manifest, "manifest_format") error("Manifest.toml is in the old format, run Pkg.upgrade_manifest()") end diff --git a/build/create_binaries/src/create_binaries.jl b/build/create_binaries/src/create_binaries.jl new file mode 100644 index 000000000..12701a5c9 --- /dev/null +++ b/build/create_binaries/src/create_binaries.jl @@ -0,0 +1,4 @@ +__precompile__(false) + +# This is not really a package, but needs to be set up like one so we can run +# `dev build/create_binaries` from the root project. diff --git a/build/libribasim/Manifest.toml b/build/libribasim/Manifest.toml deleted file mode 100644 index 95db712d6..000000000 --- a/build/libribasim/Manifest.toml +++ /dev/null @@ -1,1356 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = 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"49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/build/ribasim_cli/Project.toml b/build/ribasim_cli/Project.toml index ccdb443aa..dedb7e3ef 100644 --- a/build/ribasim_cli/Project.toml +++ b/build/ribasim_cli/Project.toml @@ -1,6 +1,7 @@ name = "ribasim_cli" uuid = "e45c999e-e944-4589-a8e6-7d0b7a60140a" -authors = ["Deltares and contributors"] +authors = ["Deltares and contributors "] +manifest = "../../Manifest.toml" version = "0.1.0" [deps] diff --git a/core/Project.toml b/core/Project.toml index f6870c236..d5e379975 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -1,6 +1,7 @@ name = "Ribasim" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" authors = ["Deltares and contributors "] +manifest = "../Manifest.toml" version = "0.4.0" [deps] diff --git a/docs/Manifest.toml b/docs/Manifest.toml deleted file mode 100644 index 0ea664daa..000000000 --- a/docs/Manifest.toml +++ /dev/null @@ -1,142 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "f9da26c97b8dd21bb861d490428435c07bbfff72" - -[[deps.ANSIColoredPrinters]] -git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" -uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" -version = "0.0.1" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Documenter]] -deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67" -uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.27.25" - -[[deps.DocumenterMarkdown]] -deps = ["Documenter"] -git-tree-sha1 = "9af057a98652336e30586d8092fac06f8b28ecdc" -uuid = "997ab1e6-3595-5248-9280-8efb232c3433" -version = "0.2.2" - -[[deps.IOCapture]] -deps = ["Logging", "Random"] -git-tree-sha1 = "d75853a0bdbfb1ac815478bacd89cd27b550ace6" -uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" -version = "0.2.3" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JSON3]] -deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] -git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3" -uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.13.2" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.StructTypes]] -deps = ["Dates", "UUIDs"] -git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" -uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" -version = "1.10.0" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" diff --git a/docs/Project.toml b/docs/Project.toml index f94700499..1f51098a5 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -1,14 +1,30 @@ +name = "docs" +uuid = "8daea9ca-fc6c-4731-aa85-717fa0b706bc" +authors = ["Deltares and contributors "] +description = "Build Ribasim docs and generate schemas" +manifest = "../Manifest.toml" +version = "0.1.0" + [deps] +Configurations = "5218b696-f38b-4ac9-8b61-a12ec717816d" +Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" DocumenterMarkdown = "997ab1e6-3595-5248-9280-8efb232c3433" InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240" JSON3 = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" +Legolas = "741b9549-f6ed-4911-9fbf-4a1c0c97f0cd" +Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +Ribasim = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" [compat] +Configurations = "0.17" +Dates = "1" Documenter = "0.27" DocumenterMarkdown = "0.2" InteractiveUtils = "1" JSON3 = "1.12" +Legolas = "0.5" +Logging = "1" OrderedCollections = "1.6" julia = "1.9" diff --git a/docs/contribute/core.qmd b/docs/contribute/core.qmd index ce2815dc4..cd611748f 100644 --- a/docs/contribute/core.qmd +++ b/docs/contribute/core.qmd @@ -62,7 +62,7 @@ Before the tests can run, you need to [prepare model input](./python.qmd#prepare With the root of the repository as your working directory you can start the REPL with activated `Ribasim` environment by running the following: ```bash -julia --project=core +julia --project ``` While not technically required, it is advised to import Ribasim first to catch installation issues early on. @@ -73,12 +73,6 @@ julia> using Ribasim Then open the Pkg REPL by typing `]` and execute: -```julia -pkg> test -``` - -If you are in a different environment that depends on Ribasim, you can test Ribasim with the following command: - ```julia pkg> test Ribasim ``` @@ -90,15 +84,10 @@ However, here, you don't have the dependencies available in the `[extras]` secti When you then debug your tests inside the REPL, you can include the `[extras]` dependencies as follows: ```julia -using TestEnv -TestEnv.activate() +using TestEnv, +TestEnv.activate("Ribasim") ``` -:::{.callout-tip} -The Julia VS Code extension allows you to [open a REPL](https://www.julia-vscode.org/docs/stable/userguide/runningcode/#The-Julia-REPL) with the Ribasim environment already activated: `"julia.environmentPath": "Ribasim/core"`. -That way you don't have to type `activate core` every time you open the REPL. -::: - ## Render documentation Example models are created and simulated as part of the rendering of the documentation. @@ -131,7 +120,7 @@ Assuming your working directory is the root of the repository, you can activate this project by entering the Pkg mode of the REPL with `]` and execute: ```julia -pkg> activate core +pkg> activate . pkg> instantiate ``` diff --git a/docs/gen_schema.jl b/docs/gen_schema.jl index 11f45faf3..7cde8ffa5 100644 --- a/docs/gen_schema.jl +++ b/docs/gen_schema.jl @@ -1,11 +1,9 @@ """ Generate JSON schemas for Ribasim input -Run with `julia --project=docs docs/gen_schema.jl` +Runs as part of `pixi run codegen` """ -pushfirst!(LOAD_PATH, normpath(@__DIR__, "../core")) - using Ribasim using JSON3 using Legolas diff --git a/docs/make.jl b/docs/make.jl index b1e4e261e..07942b191 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -1,5 +1,5 @@ cd(@__DIR__) -push!(LOAD_PATH, "../core/") + using Documenter, Ribasim using DocumenterMarkdown diff --git a/docs/src/docs.jl b/docs/src/docs.jl new file mode 100644 index 000000000..12701a5c9 --- /dev/null +++ b/docs/src/docs.jl @@ -0,0 +1,4 @@ +__precompile__(false) + +# This is not really a package, but needs to be set up like one so we can run +# `dev build/create_binaries` from the root project. diff --git a/pixi.toml b/pixi.toml index 46afcf750..4568e3fad 100644 --- a/pixi.toml +++ b/pixi.toml @@ -27,17 +27,10 @@ install-without-pre-commit = { depends_on = [ ] } install = { depends_on = ["install-without-pre-commit", "install-pre-commit"] } # Instantiate -instantiate-julia-core = "julia --project=core --eval='using Pkg; Pkg.instantiate()'" -instantiate-julia-docs = "julia --project=docs --eval='using Pkg; Pkg.instantiate()'" -instantiate-julia-build = "julia --project=build/create_binaries --eval='using Pkg; Pkg.instantiate()'" -instantiate-julia = { depends_on = [ - "instantiate-julia-core", - "instantiate-julia-docs", - "instantiate-julia-build", -] } +instantiate-julia = "julia --project --eval='using Pkg; Pkg.instantiate()'" # Docs build-julia-docs = { cmd = "julia --project=docs docs/make.jl", depends_on = [ - "instantiate-julia-docs", + "instantiate-julia", ] } quartodoc-build = "cd docs && quartodoc build && rm objects.json" quarto-preview = { cmd = "export QUARTO_PYTHON=python && quarto preview docs", depends_on = [ @@ -62,11 +55,11 @@ lint = { depends_on = [ # Build build-ribasim-cli = { cmd = "cd build/create_binaries && julia --project create_app.jl", depends_on = [ "generate-testmodels", - "instantiate-julia-build", + "instantiate-julia", ] } build-libribasim = { cmd = "cd build/create_binaries && julia --project create_lib.jl", depends_on = [ "generate-testmodels", - "instantiate-julia-build", + "instantiate-julia", ] } build = { depends_on = ["build-ribasim-cli", "build-libribasim"] } # Test @@ -74,14 +67,14 @@ test-ribasim-python = "pytest --numprocesses=auto python/ribasim/tests" test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=report.xml python/ribasim_api/tests" test-ribasim-cli = "pytest --numprocesses=auto --basetemp=build/ribasim_cli/tests/temp --junitxml=report.xml build/ribasim_cli/tests" test-ribasim-core = { cmd = "julia --project=core --eval 'using Pkg; Pkg.test()'", depends_on = [ - "instantiate-julia-core", + "instantiate-julia", "generate-testmodels", ] } generate-testmodels = "python utils/generate-testmodels.py" tests = { depends_on = ["lint", "test-ribasim-python", "test-ribasim-core"] } # Codegen generate-schema = { cmd = "julia --project=docs docs/gen_schema.jl", depends_on = [ - "instantiate-julia-docs", + "instantiate-julia", ] } generate-python = """\ datamodel-codegen --use-title-as-name --use-double-quotes --disable-timestamp --use-default --strict-nullable --input-file-type=jsonschema --input docs/schema/root.schema.json --output python/ribasim/ribasim/models.py && \