From 040afee0b2bfb3851790a0608371f733fb3a9ac4 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 21 Mar 2024 11:48:02 +0100 Subject: [PATCH 001/158] Treat `UserDemand` return flow as a source (#1226) Fixes https://github.com/Deltares/Ribasim/issues/1212. --- core/src/allocation_init.jl | 89 ++++++------------- core/src/allocation_optim.jl | 46 ++++++++++ core/src/util.jl | 24 ----- core/test/allocation_test.jl | 28 ++++-- docs/core/allocation.qmd | 56 +++--------- docs/core/usage.qmd | 2 +- .../ribasim_testmodels/allocation.py | 4 +- 7 files changed, 107 insertions(+), 142 deletions(-) diff --git a/core/src/allocation_init.jl b/core/src/allocation_init.jl index 6ef809bd8..6fd3ddbd5 100644 --- a/core/src/allocation_init.jl +++ b/core/src/allocation_init.jl @@ -295,30 +295,6 @@ end const allocation_source_nodetypes = Set{NodeType.T}([NodeType.LevelBoundary, NodeType.FlowBoundary]) -""" -Remove allocation UserDemand return flow edges that are upstream of the UserDemand itself. -""" -function avoid_using_own_returnflow!(p::Parameters, allocation_network_id::Int32)::Nothing - (; graph) = p - node_ids = graph[].node_ids[allocation_network_id] - edge_ids = graph[].edge_ids[allocation_network_id] - node_ids_user_demand = - [node_id for node_id in node_ids if node_id.type == NodeType.UserDemand] - - for node_id_user_demand in node_ids_user_demand - node_id_return_flow = only(outflow_ids_allocation(graph, node_id_user_demand)) - if allocation_path_exists_in_graph(graph, node_id_return_flow, node_id_user_demand) - edge_metadata = graph[node_id_user_demand, node_id_return_flow] - graph[node_id_user_demand, node_id_return_flow] = - @set edge_metadata.allocation_flow = false - empty!(edge_metadata.node_ids) - delete!(edge_ids, (node_id_user_demand, node_id_return_flow)) - @debug "The outflow of $node_id_user_demand is upstream of the UserDemand itself and thus ignored in allocation solves." - end - end - return nothing -end - """ Add the edges connecting the main network work to a subnetwork to both the main network and subnetwork allocation network. @@ -359,9 +335,6 @@ function allocation_graph( error("Errors in sources in allocation network.") end - # Discard UserDemand return flow in allocation if this leads to a closed loop of flow - avoid_using_own_returnflow!(p, allocation_network_id) - return capacity end @@ -512,6 +485,31 @@ function add_constraints_capacity!( return nothing end +""" +Add capacity constraints to the outflow edge of UserDemand nodes. +The constraint indices are the UserDemand node IDs. + +Constraint: +flow over UserDemand edge outflow edge <= cumulative return flow from previous priorities +""" +function add_constraints_user_source!( + problem::JuMP.Model, + p::Parameters, + allocation_network_id::Int32, +)::Nothing + (; graph) = p + F = problem[:F] + node_ids = graph[].node_ids[allocation_network_id] + node_ids_user = [node_id for node_id in node_ids if node_id.type == NodeType.UserDemand] + + problem[:source_user] = JuMP.@constraint( + problem, + [node_id = node_ids_user], + F[(node_id, outflow_id(graph, node_id))] <= 0.0 + ) + return nothing +end + """ Add the source constraints to the allocation problem. The actual threshold values will be set before each allocation solve. @@ -693,41 +691,6 @@ function add_constraints_conservation_basin!( return nothing end -""" -Add the UserDemand returnflow constraints to the allocation problem. -The constraint indices are UserDemand node IDs. -Constraint: -outflow from user_demand <= return factor * inflow to user_demand -""" -function add_constraints_user_demand_returnflow!( - problem::JuMP.Model, - p::Parameters, - allocation_network_id::Int32, -)::Nothing - (; graph, user_demand) = p - F = problem[:F] - - node_ids = graph[].node_ids[allocation_network_id] - node_ids_user_demand_with_returnflow = [ - node_id for node_id in node_ids if node_id.type == NodeType.UserDemand && - !isempty(outflow_ids_allocation(graph, node_id)) - ] - problem[:return_flow] = JuMP.@constraint( - problem, - [node_id_user_demand = node_ids_user_demand_with_returnflow], - F[( - node_id_user_demand, - only(outflow_ids_allocation(graph, node_id_user_demand)), - )] <= - user_demand.return_factor[findsorted(user_demand.node_id, node_id_user_demand)] * F[( - only(inflow_ids_allocation(graph, node_id_user_demand)), - node_id_user_demand, - )], - base_name = "return_flow", - ) - return nothing -end - """ Minimizing |expr| can be achieved by introducing a new variable expr_abs and posing the following constraints: @@ -971,7 +934,7 @@ function allocation_problem( add_constraints_capacity!(problem, capacity, p, allocation_network_id) add_constraints_source!(problem, p, allocation_network_id) - add_constraints_user_demand_returnflow!(problem, p, allocation_network_id) + add_constraints_user_source!(problem, p, allocation_network_id) add_constraints_fractional_flow!(problem, p, allocation_network_id) add_constraints_basin_flow!(problem) add_constraints_flow_demand_outflow!(problem, p, allocation_network_id) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 09fad5d3d..17e9eab37 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -424,6 +424,48 @@ function adjust_capacities_basin!( return nothing end +""" +Set the initial capacities of the UserDemand return flow sources to 0. +""" +function set_initial_capacities_returnflow!(allocation_model::AllocationModel)::Nothing + (; problem) = allocation_model + constraints_outflow = problem[:source_user] + + for node_id in only(constraints_outflow.axes) + constraint = constraints_outflow[node_id] + capacity = 0.0 + JuMP.set_normalized_rhs(constraint, capacity) + end + return nothing +end + +""" +Add the return flow fraction of the inflow to the UserDemand nodes +to the capacity of the outflow source. +""" +function adjust_capacities_returnflow!( + allocation_model::AllocationModel, + p::Parameters, +)::Nothing + (; graph, user_demand) = p + (; problem) = allocation_model + constraints_outflow = problem[:source_user] + F = problem[:F] + + for node_id in only(constraints_outflow.axes) + constraint = constraints_outflow[node_id] + user_idx = findsorted(user_demand.node_id, node_id) + capacity = + JuMP.normalized_rhs(constraint) + + user_demand.return_factor[user_idx] * + JuMP.value(F[(inflow_id(graph, node_id), node_id)]) + + JuMP.set_normalized_rhs(constraint, capacity) + end + + return nothing +end + """ Set the demand of the flow demand nodes. 2 cases: - Before the first allocation solve, set the demands to their full value; @@ -728,6 +770,8 @@ function allocate_priority!( priorities[priority_idx], collect_demands, ) + + adjust_capacities_returnflow!(allocation_model, p) return nothing end @@ -756,6 +800,8 @@ function allocate!( end end + set_initial_capacities_returnflow!(allocation_model) + for priority_idx in eachindex(priorities) allocate_priority!(allocation_model, u, p, t, priority_idx; collect_demands) end diff --git a/core/src/util.jl b/core/src/util.jl index 25dfbdee1..3b2131d1e 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -588,30 +588,6 @@ is_flow_constraining(node::AbstractParameterNode) = hasfield(typeof(node), :max_ is_flow_direction_constraining(node::AbstractParameterNode) = (nameof(typeof(node)) ∈ [:Pump, :Outlet, :TabulatedRatingCurve, :FractionalFlow]) -"""Find out whether a path exists between a start node and end node in the given allocation network.""" -function allocation_path_exists_in_graph( - graph::MetaGraph, - start_node_id::NodeID, - end_node_id::NodeID, -)::Bool - node_ids_visited = Set{NodeID}() - stack = [start_node_id] - - while !isempty(stack) - current_node_id = pop!(stack) - if current_node_id == end_node_id - return true - end - if !(current_node_id in node_ids_visited) - push!(node_ids_visited, current_node_id) - for outneighbor_node_id in outflow_ids_allocation(graph, current_node_id) - push!(stack, outneighbor_node_id) - end - end - end - return false -end - function has_main_network(allocation::Allocation)::Bool if !is_active(allocation) false diff --git a/core/test/allocation_test.jl b/core/test/allocation_test.jl index 4d503e92e..996e4ed83 100644 --- a/core/test/allocation_test.jl +++ b/core/test/allocation_test.jl @@ -29,18 +29,19 @@ u = ComponentVector(; storage = zeros(length(p.basin.node_id))) Ribasim.allocate!(p, allocation_model, 0.0, u) + # Last priority (= 2) flows F = allocation_model.problem[:F] @test JuMP.value(F[(NodeID(:Basin, 2), NodeID(:Basin, 6))]) ≈ 0.0 @test JuMP.value(F[(NodeID(:Basin, 2), NodeID(:UserDemand, 10))]) ≈ 0.5 - @test JuMP.value(F[(NodeID(:Basin, 8), NodeID(:UserDemand, 12))]) ≈ 0.0 - @test JuMP.value(F[(NodeID(:Basin, 6), NodeID(:Basin, 8))]) ≈ 0.0 + @test JuMP.value(F[(NodeID(:Basin, 8), NodeID(:UserDemand, 12))]) ≈ 2.0 + @test JuMP.value(F[(NodeID(:Basin, 6), NodeID(:Basin, 8))]) ≈ 2.0 @test JuMP.value(F[(NodeID(:FlowBoundary, 1), NodeID(:Basin, 2))]) ≈ 0.5 @test JuMP.value(F[(NodeID(:Basin, 6), NodeID(:UserDemand, 11))]) ≈ 0.0 allocated = p.user_demand.allocated @test allocated[1] ≈ [0.0, 0.5] @test allocated[2] ≈ [4.0, 0.0] - @test allocated[3] ≈ [0.0, 0.0] + @test allocated[3] ≈ [0.0, 2.0] # Test getting and setting UserDemand demands (; user_demand) = p @@ -226,7 +227,7 @@ end @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [4.0, 4.0, 0.0] @test subnetwork_demands[(NodeID(:Basin, 6), NodeID(:Pump, 24))] ≈ [0.004, 0.0, 0.0] @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))] ≈ - [0.001, 0.002, 0.002] + [0.001, 0.002, 0.0011] # Solving for the main network, containing subnetworks as UserDemands allocation_model = allocation_models[1] @@ -331,7 +332,7 @@ end @test ispath(toml_path) model = Ribasim.Model(toml_path) (; p) = model.integrator - (; graph, allocation, flow_demand) = p + (; graph, allocation, flow_demand, user_demand, level_boundary) = p # Test has_external_demand @test !any( @@ -373,14 +374,14 @@ end t = 0.0 - # Priority 1 + ## Priority 1 Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 1) objective = JuMP.objective_function(problem) @test F_abs_flow_demand[node_id_with_flow_demand] in keys(objective.terms) @test flow_demand.demand[1] == flow_demand.demand_itp[1](t) @test JuMP.normalized_rhs(constraint_flow_out) == Inf - # Priority 2 + ## Priority 2 Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 2) # The flow at priority 1 through the node with a flow demand at priority 2 # is subtracted from this flow demand @@ -389,7 +390,7 @@ end Ribasim.get_user_demand(p, NodeID(NodeType.UserDemand, 6), 1) @test JuMP.normalized_rhs(constraint_flow_out) == 0.0 - # Priority 3 + ## Priority 3 Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 3) @test JuMP.normalized_rhs(constraint_flow_out) == Inf # The flow from the source is used up in previous priorities @@ -397,6 +398,17 @@ end # So flow from the flow buffer is used for UserDemand #4 @test JuMP.value(F_flow_buffer_out[node_id_with_flow_demand]) == Ribasim.get_user_demand(p, NodeID(NodeType.UserDemand, 4), 3) + # Flow taken from buffer + @test JuMP.value(only(F_flow_buffer_out)) == user_demand.demand_itp[1][3](t) + # No flow coming from level boundary + @test JuMP.value(F[(only(level_boundary.node_id), node_id_with_flow_demand)]) == 0 + + ## Priority 4 + Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 4) + # Get demand from buffers + d = user_demand.demand_itp[3][4](t) + @assert JuMP.value(F[(NodeID(NodeType.UserDemand, 4), NodeID(NodeType.Basin, 7))]) + + JuMP.value(F[(NodeID(NodeType.UserDemand, 6), NodeID(NodeType.Basin, 7))]) == d end @testitem "flow_demand_with_max_flow_rate" begin diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index 92fa67ca1..dabf834f4 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -122,8 +122,9 @@ The capacities are determined in different ways: There are also capacities for special edges: -- $C^B_S \in \mathbb{R}^b_{\ge 0}$ where $b = \# B_S$ is the number of basins, for the flow supplied by basins. +- $C^{LD}_S \in \mathbb{R}^b_{\ge 0}$ where $b = \# B_S$ is the number of basins, for the flow supplied by basins based on level demand (this capacity is 0 for basins that have no level demand). - $C^{FD}_S \in \mathbb{R}^c_{\ge 0}$ where $c = \# FD_S$ is the number of nodes with a flow demand, for the flow supplied by flow buffers at these nodes with a flow demand. +- $C^{UD}_S \in \mathbb{R}^f_{\ge 0}$ where $f = \# U_S$, for the flow supplied by the user demand outflow source whose capacity is given by return flows. # The optimization problem @@ -198,25 +199,23 @@ $$ When performing subnetwork demand collection, these capacities are set to $\infty$ for edges which connect the main network to a subnetwork. ::: -Similar constraints hold for the flow out of basins and flow demand buffers: +Similar constraints hold for the flow out of basins, flow demand buffers and user demand outflow sources: $$ -F^\text{basin out}_{i} \le (C^B_S)_i, \quad \forall i \in B_S, +F^\text{basin out}_{i} \le (C^{FD}_S)_i, \quad \forall i \in B_S, $$ $$ -F^\text{buffer out}_{i} \le (C^FD_S)_i, \quad \forall i \in FD_S. +F^\text{buffer out}_{i} \le (C^{FD}_S)_i, \quad \forall i \in FD_S, $$ - -- `UserDemand` outflow: The outflow of the UserDemand is dictated by the inflow and the return factor: $$ - F_{ik} = r_k \cdot F_{kj} \quad - \quad \forall k \in U_S, \quad - V^{\text{in}}_S(k) = \{i\},\; - V^{\text{out}}_S(k) = \{j\}. -$$ {#eq-returnflowconstraint} -Here we use that each UserDemand node in the allocation network has a unique in-edge and out-edge. -- User demand: UserDemand demand constraints are discussed in [the next section](allocation.qmd#sec-solving-allocation). +F_{ij} \le (C^{UD}_S)_i, \quad \forall i \in U_S, \quad V_S^{\text{out}}(i) = \{j\}. +$$ +Here we use that each UserDemand node in the allocation network has a unique outflow edge. The user outflow source capacities are increased after each optimization solve by the return fraction: +$$ + r_i \cdot F_{ki}, \quad V_S^{\text{in}}(i) = \{k\}. +$$ + - Fractional flow: Let $L_S \subset V_S$ be the set of nodes in the max flow graph with fractional flow outneighbors, and $f_j$ the flow fraction associated with fractional flow node $j \in V_S$. Then $$ F_{ij} \le f_j \sum_{k\in V^\text{in}_S(i)} F_{ki} \qquad @@ -226,37 +225,6 @@ $$ {#eq-fractionalflowconstraint} - Flow sign: Furthermore there are the non-negativity constraints for the flows and allocations, see [The optimization variables](allocation.qmd#the-optimization-variables). -## Final notes on the allocation problem - -### UserDemands using their own return flow - -If not explicitly avoided, UserDemands can use their own return flow in this allocation problem formulation. -Therefore, return flow of UserDemand is only taken into account by allocation if that return flow is downstream of the UserDemand where it comes from. That is, if there is no path in the directed allocation network from the UserDemand outflow node back to the UserDemand. - -# Solving the allocation problem {#sec-solving-allocation} - -The allocation problem for an allocation network at time $t$ is solved per priority, as follows: - -1. Define a capacity matrix with capacities as described above, that will be updated for each priority: -$$ - C_S^p \leftarrow C_S; -$$ -2. Set the capacities of the edges that end in a UserDemand to their priority 1 demands: -$$ - (C_S^p)_{i,j} \leftarrow d_j^1(t) \quad\text{ for all } (i,j) \in U_S; -$$ -3. Maximize the objective function given the constraints; -4. Subtract the used flows from the edge capacities: -$$ - C_S^p \leftarrow C_S^p - F; -$$ -5. Repeat steps 2-4 for the remaining priorities up to $p_{\max}$. - -:::{.callout-note} -In the future there will be 2 more optimization solves: -- One before optimizing for demands, taking the demand/supply from basins into account; -- One after optimizing for demands, taking preferences over sources into account. -::: ## Example diff --git a/docs/core/usage.qmd b/docs/core/usage.qmd index 243e0d9f2..e3da5d330 100644 --- a/docs/core/usage.qmd +++ b/docs/core/usage.qmd @@ -501,7 +501,7 @@ min_level | Float64 | $m$ | - max_level | Float64 | $m$ | - priority | Int32 | - | positive -# FlowDemand {#sec-level_demand} +# FlowDemand {#sec-flow_demand} A `FlowDemand` node associates a non-consuming flow demand to a connector node (e.g. `Pump`, `TabulatedRatingCurve`) for one single priority. FlowDemand nodes can set a flow demand only for a single connector node. diff --git a/python/ribasim_testmodels/ribasim_testmodels/allocation.py b/python/ribasim_testmodels/ribasim_testmodels/allocation.py index 3509ead1f..2ff7bac8b 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/allocation.py +++ b/python/ribasim_testmodels/ribasim_testmodels/allocation.py @@ -121,7 +121,7 @@ def subnetwork_model() -> Model: Node(11, Point(3, 3), subnetwork_id=2), [ user_demand.Static( - demand=[5.0], return_factor=0.9, min_level=0.9, priority=1 + demand=[5.0], return_factor=0.5, min_level=0.9, priority=1 ) ], ) @@ -939,7 +939,7 @@ def flow_demand_model() -> Model: Node(8, Point(3, -2), subnetwork_id=2), [ user_demand.Static( - priority=[4], demand=1e-3, return_factor=1.0, min_level=0.2 + priority=[4], demand=2e-3, return_factor=1.0, min_level=0.2 ) ], ) From 21600cf70a8dc8625afcf49c104f4b2c753dea70 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Fri, 22 Mar 2024 09:44:32 +0100 Subject: [PATCH 002/158] Unpin OteraEngine, switch to latest 0.5.1 (#1301) Fixes #1240 It was not a breaking change but a regression, which I reported and then swiftly got fixed. --- Manifest.toml | 6 +++--- Project.toml | 3 --- 2 files changed, 3 insertions(+), 6 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index d596926b1..1fac1ddbd 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.0" manifest_format = "2.0" -project_hash = "a66ce8b152bba81b582cbf6d8a2e07a88d016add" +project_hash = "22708fb864a341d70b001d75765852e92f1f5399" [[deps.ADTypes]] git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" @@ -1075,9 +1075,9 @@ version = "6.74.0" [[deps.OteraEngine]] deps = ["Markdown", "Pkg", "TOML"] -git-tree-sha1 = "0d57df750e20a4534a117398dc04eb237d86ea70" +git-tree-sha1 = "69e36fecf524a1da7d76a8ae3e70a221d86d2867" uuid = "b2d7f28f-acd6-4007-8b26-bc27716e5513" -version = "0.4.1" +version = "0.5.1" [[deps.PackageCompiler]] deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs", "p7zip_jll"] diff --git a/Project.toml b/Project.toml index 3919b75a2..c6c2b70ef 100644 --- a/Project.toml +++ b/Project.toml @@ -56,6 +56,3 @@ TestEnv = "1e6cf692-eddd-4d53-88a5-2d735e33781b" TimeZones = "f269a46b-ccf7-5d73-abea-4c690281aa53" TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" TranscodingStreams = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" - -[compat] -OteraEngine = "0.4" From 1fe87c26c0512b9ffd56cd1b991ff71b0af4d080 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Fri, 22 Mar 2024 10:37:02 +0100 Subject: [PATCH 003/158] Update version numbers (#1303) In order to prepare for release --- Manifest.toml | 2 +- core/Project.toml | 2 +- core/test/data/config_test.toml | 2 +- core/test/data/logging_test_loglevel_debug.toml | 2 +- core/test/data/logging_test_no_loglevel.toml | 2 +- core/test/docs.toml | 2 +- pixi.toml | 2 +- python/ribasim/ribasim/__init__.py | 2 +- python/ribasim_api/ribasim_api/__init__.py | 2 +- ribasim_qgis/metadata.txt | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 1fac1ddbd..42d87b52e 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1247,7 +1247,7 @@ version = "3.5.14" deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "Dictionaries", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimeZones", "TimerOutputs", "TranscodingStreams"] path = "core" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" -version = "2024.4.0" +version = "2024.5.0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] diff --git a/core/Project.toml b/core/Project.toml index b8c4ff255..2ea2db8cd 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -2,7 +2,7 @@ name = "Ribasim" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" authors = ["Deltares and contributors "] manifest = "../Manifest.toml" -version = "2024.4.0" +version = "2024.5.0" [deps] Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" diff --git a/core/test/data/config_test.toml b/core/test/data/config_test.toml index 9c7390dd3..dbf0469ac 100644 --- a/core/test/data/config_test.toml +++ b/core/test/data/config_test.toml @@ -2,7 +2,7 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "../../generated_testmodels/lhm" results_dir = "../../generated_testmodels/lhm" -ribasim_version = "2024.4.0" +ribasim_version = "2024.5.0" [basin] time = "basin/time.arrow" diff --git a/core/test/data/logging_test_loglevel_debug.toml b/core/test/data/logging_test_loglevel_debug.toml index a8c077906..e25e35415 100644 --- a/core/test/data/logging_test_loglevel_debug.toml +++ b/core/test/data/logging_test_loglevel_debug.toml @@ -2,7 +2,7 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "." results_dir = "results" -ribasim_version = "2024.4.0" +ribasim_version = "2024.5.0" [logging] verbosity = "debug" diff --git a/core/test/data/logging_test_no_loglevel.toml b/core/test/data/logging_test_no_loglevel.toml index 7e0c9514b..560b8742e 100644 --- a/core/test/data/logging_test_no_loglevel.toml +++ b/core/test/data/logging_test_no_loglevel.toml @@ -2,4 +2,4 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "." results_dir = "results" -ribasim_version = "2024.4.0" +ribasim_version = "2024.5.0" diff --git a/core/test/docs.toml b/core/test/docs.toml index a7f35121a..9bc838934 100644 --- a/core/test/docs.toml +++ b/core/test/docs.toml @@ -7,7 +7,7 @@ endtime = 2021-01-01 # required input_dir = "." # required results_dir = "results" # required -ribasim_version = "2024.4.0" # required +ribasim_version = "2024.5.0" # required # Specific tables can also go into Arrow files rather than the database. # For large tables this can benefit from better compressed file sizes. diff --git a/pixi.toml b/pixi.toml index 220657e16..d538096ab 100644 --- a/pixi.toml +++ b/pixi.toml @@ -1,6 +1,6 @@ [project] name = "Ribasim" -version = "2024.4.0" +version = "2024.5.0" description = "Water resources modeling" authors = ["Deltares and contributors "] channels = ["conda-forge"] diff --git a/python/ribasim/ribasim/__init__.py b/python/ribasim/ribasim/__init__.py index 799569fe8..e388d3398 100644 --- a/python/ribasim/ribasim/__init__.py +++ b/python/ribasim/ribasim/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.4.0" +__version__ = "2024.5.0" from ribasim.config import Allocation, Logging, Node, Solver diff --git a/python/ribasim_api/ribasim_api/__init__.py b/python/ribasim_api/ribasim_api/__init__.py index a8d68a239..bbabe0560 100644 --- a/python/ribasim_api/ribasim_api/__init__.py +++ b/python/ribasim_api/ribasim_api/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.4.0" +__version__ = "2024.5.0" from ribasim_api.ribasim_api import RibasimApi diff --git a/ribasim_qgis/metadata.txt b/ribasim_qgis/metadata.txt index f35eeeada..65dc4da3e 100644 --- a/ribasim_qgis/metadata.txt +++ b/ribasim_qgis/metadata.txt @@ -7,7 +7,7 @@ name=Ribasim-QGIS qgisMinimumVersion=3.0 description=QGIS plugin to setup Ribasim models -version=2024.4.0 +version=2024.5.0 author=Deltares and contributors email=ribasim.info@deltares.nl From f43010bb1b0521a27fcda9d93f60ac4d364bfb45 Mon Sep 17 00:00:00 2001 From: Huite Date: Fri, 22 Mar 2024 12:07:26 +0100 Subject: [PATCH 004/158] Add support for indexing into TableModel, except Edge (#1304) --- python/ribasim/ribasim/config.py | 15 +++++++++--- python/ribasim/ribasim/geometry/edge.py | 3 +++ python/ribasim/ribasim/input_base.py | 15 ++++++++++++ python/ribasim/tests/test_edge.py | 5 ++++ python/ribasim/tests/test_model.py | 32 +++++++++++++++++++++++++ 5 files changed, 67 insertions(+), 3 deletions(-) diff --git a/python/ribasim/ribasim/config.py b/python/ribasim/ribasim/config.py index d68d3f710..4f4d45fa4 100644 --- a/python/ribasim/ribasim/config.py +++ b/python/ribasim/ribasim/config.py @@ -1,3 +1,4 @@ +import numbers from collections.abc import Sequence from enum import Enum from typing import Any @@ -144,10 +145,18 @@ def add(self, node: Node, tables: Sequence[TableModel[Any]] | None = None) -> No else pd.concat([self.node.df, node_table]) ) - def __getitem__(self, index): - row = self.node.df[self.node.df["node_id"] == index].iloc[0] + def __getitem__(self, index: int) -> NodeData: + # Unlike TableModel, support only indexing single rows. + if not isinstance(index, numbers.Integral): + node_model_name = type(self).__name__ + indextype = type(index).__name__ + raise TypeError( + f"{node_model_name} index must be an integer, not {indextype}" + ) + + row = self.node[index].iloc[0] return NodeData( - node_id=index, node_type=row["node_type"], geometry=row["geometry"] + node_id=int(index), node_type=row["node_type"], geometry=row["geometry"] ) diff --git a/python/ribasim/ribasim/geometry/edge.py b/python/ribasim/ribasim/geometry/edge.py index c71f47aa5..ba92a824a 100644 --- a/python/ribasim/ribasim/geometry/edge.py +++ b/python/ribasim/ribasim/geometry/edge.py @@ -159,3 +159,6 @@ def plot(self, **kwargs) -> Axes: ) return ax + + def __getitem__(self, _): + raise NotImplementedError diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index cf5373fc9..3b6ec99b6 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -14,6 +14,7 @@ ) import geopandas as gpd +import numpy as np import pandas as pd import pandera as pa from pandera.typing import DataFrame @@ -337,6 +338,20 @@ def _repr_html_(self): else: return f"
{self.tablename()}
" + self.df._repr_html_() + def __getitem__(self, index) -> pd.DataFrame | gpd.GeoDataFrame: + tablename = self.tablename() + if self.df is None: + raise ValueError(f"Cannot index into {tablename}: it contains no data.") + + # Allow for indexing with multiple values. + np_index = np.atleast_1d(index) + missing = np.setdiff1d(np_index, self.df["node_id"].unique()) + if missing.size > 0: + raise IndexError(f"{tablename} does not contain node_id: {missing}") + + # Index with .loc[..., :] to always return a DataFrame. + return self.df.loc[self.df["node_id"].isin(np_index), :] + class SpatialTableModel(TableModel[TableT], Generic[TableT]): df: GeoDataFrame[TableT] | None = Field(default=None, exclude=True, repr=False) diff --git a/python/ribasim/tests/test_edge.py b/python/ribasim/tests/test_edge.py index 045f11645..ce1acd501 100644 --- a/python/ribasim/tests/test_edge.py +++ b/python/ribasim/tests/test_edge.py @@ -32,3 +32,8 @@ def test_validation(edge): def test_edge_plot(edge): edge.plot() + + +def test_edge_indexing(edge): + with pytest.raises(NotImplementedError): + edge[1] diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index eefc87e9c..d5f3b4207 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -6,6 +6,7 @@ import pytest from pydantic import ValidationError from ribasim.config import Solver +from ribasim.geometry.edge import NodeData from ribasim.input_base import esc_id from ribasim.model import Model from shapely import Point @@ -182,3 +183,34 @@ def test_node_table(basic): assert df.geometry.is_unique assert df.node_type.iloc[0] == "Basin" assert df.node_type.iloc[-1] == "Terminal" + + +def test_indexing(basic): + model = basic + + result = model.basin[1] + assert isinstance(result, NodeData) + + # Also test with a numpy type + result = model.basin[np.int32(1)] + assert isinstance(result, NodeData) + + with pytest.raises(TypeError, match="Basin index must be an integer, not list"): + model.basin[[1, 3, 6]] + + result = model.basin.static[1] + assert isinstance(result, pd.DataFrame) + + result = model.basin.static[[1, 3, 6]] + assert isinstance(result, pd.DataFrame) + + with pytest.raises( + IndexError, match=re.escape("Basin / static does not contain node_id: [2]") + ): + model.basin.static[2] + + with pytest.raises( + ValueError, + match=re.escape("Cannot index into Basin / time: it contains no data."), + ): + model.basin.time[1] From 0acbbedfeab7973ca52b1c83da19229f6b2326e4 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Mon, 25 Mar 2024 13:38:37 +0100 Subject: [PATCH 005/158] Parallelize generate testmodels (#1309) Fixes #1302 On my machine, that reduces the runtime of `pixi run generate-testmodels` from 1m50s to 42s --- utils/generate-testmodels.py | 21 +++++++++++++++++---- 1 file changed, 17 insertions(+), 4 deletions(-) diff --git a/utils/generate-testmodels.py b/utils/generate-testmodels.py index 2394efe30..516ef2281 100644 --- a/utils/generate-testmodels.py +++ b/utils/generate-testmodels.py @@ -1,8 +1,18 @@ +import multiprocessing import shutil +from functools import partial from pathlib import Path import ribasim_testmodels + +def generate_model(args, datadir): + model_name, model_constructor = args + model = model_constructor() + model.write(datadir / model_name / "ribasim.toml") + return model_name + + if __name__ == "__main__": datadir = Path("generated_testmodels") if datadir.is_dir(): @@ -18,7 +28,10 @@ Don't put important stuff in here, it will be emptied for every run.""" ) - for model_name, model_constructor in ribasim_testmodels.constructors.items(): - print(f"Generating {model_name}") - model = model_constructor() - model.write(datadir / model_name / "ribasim.toml") + generate_model_partial = partial(generate_model, datadir=datadir) + + with multiprocessing.Pool(processes=4) as p: + for model_name in p.imap_unordered( + generate_model_partial, ribasim_testmodels.constructors.items() + ): + print(f"Generated {model_name}") From bee3d395666169339ec20d61e44f068a014c4aa7 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Mon, 25 Mar 2024 14:42:22 +0100 Subject: [PATCH 006/158] Error early on non globally unique node IDs (#1311) Alleviates https://github.com/Deltares/Ribasim/issues/1262 This code will need to be removed again when that is fixed. --- core/src/model.jl | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/core/src/model.jl b/core/src/model.jl index 009cd80c2..afa24347e 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -85,6 +85,13 @@ function Model(config::Config)::Model state = load_structvector(db, config, BasinStateV1) n = length(get_ids(db, "Basin")) + sql = "SELECT node_id FROM Node ORDER BY node_id" + node_id = only(execute(columntable, db, sql)) + if !allunique(node_id) + error( + "Node IDs need to be globally unique until https://github.com/Deltares/Ribasim/issues/1262 is fixed.", + ) + end finally # always close the database, also in case of an error close(db) From fe57d38b8ea878e3efcdcb4ae531242a08692750 Mon Sep 17 00:00:00 2001 From: hofer_jn Date: Mon, 25 Mar 2024 15:32:23 +0100 Subject: [PATCH 007/158] TeamCity change in 'Ribasim' project: commit current project settings --- .../buildTypes/Ribasim_GenerateTestmodels.xml | 7 ++--- .../Ribasim_GitHubIntegrationTemplate.xml | 4 +-- .../Ribasim_Ribasim_MakeGitHubRelease.xml | 6 ++-- .../Ribasim_Ribasim_MakeQgisPlugin.xml | 10 ------- .teamcity/Ribasim/project-config.xml | 28 +++++++++---------- .../Ribasim/vcsRoots/Ribasim_Ribasim.xml | 6 ++-- .../Ribasim_Linux_BuildLibribasim.xml | 2 +- .../Ribasim_Linux_BuildRibasimCli.xml | 2 +- .../Ribasim_Linux_TestRibasimApi.xml | 2 +- .../Ribasim_Linux_TestRibasimCli.xml | 2 +- .teamcity/Ribasim_Linux/project-config.xml | 4 +-- .../Ribasim_Windows_BuildLibribasim.xml | 2 +- .../Ribasim_Windows_BuildRibasimCli.xml | 2 +- .../Ribasim_Windows_TestRibasimApi.xml | 2 +- .../Ribasim_Windows_TestRibasimCli.xml | 2 +- .teamcity/Ribasim_Windows/project-config.xml | 2 -- 16 files changed, 33 insertions(+), 50 deletions(-) diff --git a/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml b/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml index 6ec728832..f385960e6 100644 --- a/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml +++ b/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml @@ -39,13 +39,10 @@ pixi run generate-testmodels]]> - - - - - + + diff --git a/.teamcity/Ribasim/buildTypes/Ribasim_GitHubIntegrationTemplate.xml b/.teamcity/Ribasim/buildTypes/Ribasim_GitHubIntegrationTemplate.xml index 4b62b639d..53d47f3cd 100644 --- a/.teamcity/Ribasim/buildTypes/Ribasim_GitHubIntegrationTemplate.xml +++ b/.teamcity/Ribasim/buildTypes/Ribasim_GitHubIntegrationTemplate.xml @@ -6,7 +6,7 @@ - + @@ -17,7 +17,7 @@ - + diff --git a/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeGitHubRelease.xml b/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeGitHubRelease.xml index 341866805..68ecd2777 100644 --- a/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeGitHubRelease.xml +++ b/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeGitHubRelease.xml @@ -4,7 +4,7 @@ - + @@ -14,8 +14,7 @@ set -euxo pipefail . /usr/share/Modules/init/bash module load pixi -pixi run github-release -]]> +pixi run github-release]]> @@ -112,3 +111,4 @@ pixi run github-release + diff --git a/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeQgisPlugin.xml b/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeQgisPlugin.xml index 61df7b30f..a436879c0 100644 --- a/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeQgisPlugin.xml +++ b/.teamcity/Ribasim/buildTypes/Ribasim_Ribasim_MakeQgisPlugin.xml @@ -34,16 +34,6 @@ zip -r ribasim_qgis.zip ribasim_qgis]]> - - - - - - diff --git a/.teamcity/Ribasim/project-config.xml b/.teamcity/Ribasim/project-config.xml index 48a3307fa..731bb803b 100644 --- a/.teamcity/Ribasim/project-config.xml +++ b/.teamcity/Ribasim/project-config.xml @@ -3,6 +3,20 @@ Ribasim + + + + + + + + + + + + + + @@ -46,20 +60,6 @@ - - - - - - - - - - - - - - diff --git a/.teamcity/Ribasim/vcsRoots/Ribasim_Ribasim.xml b/.teamcity/Ribasim/vcsRoots/Ribasim_Ribasim.xml index 6d2362381..754676e5a 100644 --- a/.teamcity/Ribasim/vcsRoots/Ribasim_Ribasim.xml +++ b/.teamcity/Ribasim/vcsRoots/Ribasim_Ribasim.xml @@ -3,18 +3,18 @@ Ribasim - + + - - + diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml index 646583b20..6b59a4f78 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml @@ -56,7 +56,7 @@ pixi run build-libribasim]]> - + diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml index b5f19d98f..cd465d479 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml @@ -63,7 +63,7 @@ pixi run build-ribasim-cli]]> - + diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml index 9a3c252da..dd059e9da 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml @@ -79,7 +79,7 @@ pixi run test-ribasim-api]]> - + diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml index c376f147d..8859f967b 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml @@ -79,7 +79,7 @@ pixi run test-ribasim-cli]]> - + diff --git a/.teamcity/Ribasim_Linux/project-config.xml b/.teamcity/Ribasim_Linux/project-config.xml index 562047376..9a893e1ae 100644 --- a/.teamcity/Ribasim_Linux/project-config.xml +++ b/.teamcity/Ribasim_Linux/project-config.xml @@ -1,9 +1,7 @@ Linux - - - + diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml index 06a31dcbe..142e850f2 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml @@ -45,7 +45,7 @@ pixi run build-libribasim]]> - + diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml index a731216c4..f1807c28d 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml @@ -51,7 +51,7 @@ pixi run build-ribasim-cli]]> - + diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml index 820192d09..0d444dd2f 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml @@ -67,7 +67,7 @@ - + diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml index 9c9484b66..0038e1143 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml @@ -67,7 +67,7 @@ - + diff --git a/.teamcity/Ribasim_Windows/project-config.xml b/.teamcity/Ribasim_Windows/project-config.xml index 79e9fcbe0..ea879c65f 100644 --- a/.teamcity/Ribasim_Windows/project-config.xml +++ b/.teamcity/Ribasim_Windows/project-config.xml @@ -2,8 +2,6 @@ Windows - - From 4b32b7dd3085c14484edd5aa0e3ffab92245ae26 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 26 Mar 2024 09:07:56 +0100 Subject: [PATCH 008/158] Set the Node fid back to the node_id (#1316) The idea was that the Node table `fid` would not be used anymore, but #1306 showed that is unfortunately not yet the case. So this changes the `fid` after it is initially written to be equal to the `node_id`. Any users should still not rely on the `fid`, because this is only temporary. This is like #1311 but now also catching non unique node IDs on `model.write`. It also provides a temporary fix to #1306. It's not great, but I feel that especially #1306 is bad enough to warrant a quick fix. This would've been a bit cleaner to implement using #1312 to avoid having to read and re-write the Node table, but that PR still has issues we don't understand, so best not to wait on that. ![image](https://github.com/Deltares/Ribasim/assets/4471859/3efc2f8c-6be5-459d-929a-7ce8568fca3d) --- python/ribasim/ribasim/model.py | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index d0faaeb12..30c39270a 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -3,6 +3,7 @@ from pathlib import Path from typing import Any +import geopandas as gpd import pandas as pd import tomli import tomli_w @@ -138,6 +139,16 @@ def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): for sub in self._nodes(): sub._save(directory, input_dir) + # Temporarily require unique node_id for #1262 + # and copy them to the fid for #1306. + df = gpd.read_file(db_path, layer="Node") + if not df["node_id"].is_unique: + raise ValueError("node_id must be unique") + df.set_index("node_id", drop=False, inplace=True) + df.sort_index(inplace=True) + df.index.name = "fid" + df.to_file(db_path, layer="Node", driver="GPKG", index=True) + def node_table(self) -> NodeTable: """Compute the full NodeTable from all node types.""" df_chunks = [node.node.df for node in self._nodes()] From 1be891b6498f8ed688a5e4330a33074ae9965e20 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 26 Mar 2024 10:04:01 +0100 Subject: [PATCH 009/158] Use 32 bit signed integer on the Python side as well (#1315) Follow up of #1252 --- python/ribasim/ribasim/config.py | 5 +- python/ribasim/ribasim/geometry/area.py | 3 +- python/ribasim/ribasim/geometry/edge.py | 13 ++-- python/ribasim/ribasim/geometry/node.py | 5 +- python/ribasim/ribasim/model.py | 9 ++- python/ribasim/ribasim/schemas.py | 76 +++++++++---------- python/ribasim/tests/test_io.py | 4 +- python/ribasim/tests/test_model.py | 2 + .../ribasim_testmodels/backwater.py | 2 +- utils/gen_python.jl | 2 +- utils/templates/schemas.py.jinja | 4 +- 11 files changed, 67 insertions(+), 58 deletions(-) diff --git a/python/ribasim/ribasim/config.py b/python/ribasim/ribasim/config.py index 4f4d45fa4..f9605111d 100644 --- a/python/ribasim/ribasim/config.py +++ b/python/ribasim/ribasim/config.py @@ -3,6 +3,7 @@ from enum import Enum from typing import Any +import numpy as np import pandas as pd import pydantic from geopandas import GeoDataFrame @@ -98,10 +99,10 @@ def __init__(self, node_id: int, geometry: Point, **kwargs) -> None: def into_geodataframe(self, node_type: str) -> GeoDataFrame: return GeoDataFrame( data={ - "node_id": pd.Series([self.node_id], dtype=int), + "node_id": pd.Series([self.node_id], dtype=np.int32), "node_type": pd.Series([node_type], dtype=str), "name": pd.Series([self.name], dtype=str), - "subnetwork_id": pd.Series([self.subnetwork_id], dtype=pd.Int64Dtype()), + "subnetwork_id": pd.Series([self.subnetwork_id], dtype=pd.Int32Dtype()), }, geometry=[self.geometry], ) diff --git a/python/ribasim/ribasim/geometry/area.py b/python/ribasim/ribasim/geometry/area.py index 950165eed..d6aa448c1 100644 --- a/python/ribasim/ribasim/geometry/area.py +++ b/python/ribasim/ribasim/geometry/area.py @@ -1,6 +1,7 @@ from typing import Any import pandera as pa +from pandera.dtypes import Int32 from pandera.typing import Series from pandera.typing.geopandas import GeoSeries @@ -8,5 +9,5 @@ class BasinAreaSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) geometry: GeoSeries[Any] = pa.Field(default=None, nullable=True) diff --git a/python/ribasim/ribasim/geometry/edge.py b/python/ribasim/ribasim/geometry/edge.py index ba92a824a..c6199dbaf 100644 --- a/python/ribasim/ribasim/geometry/edge.py +++ b/python/ribasim/ribasim/geometry/edge.py @@ -7,6 +7,7 @@ import shapely from matplotlib.axes import Axes from numpy.typing import NDArray +from pandera.dtypes import Int32 from pandera.typing import Series from pandera.typing.geopandas import GeoDataFrame, GeoSeries from pydantic import model_validator @@ -28,11 +29,11 @@ class NodeData(NamedTuple): class EdgeSchema(pa.SchemaModel): name: Series[str] = pa.Field(default="") from_node_type: Series[str] = pa.Field(nullable=True) - from_node_id: Series[int] = pa.Field(default=0, coerce=True) + from_node_id: Series[Int32] = pa.Field(default=0, coerce=True) to_node_type: Series[str] = pa.Field(nullable=True) - to_node_id: Series[int] = pa.Field(default=0, coerce=True) + to_node_id: Series[Int32] = pa.Field(default=0, coerce=True) edge_type: Series[str] = pa.Field(default="flow", coerce=True) - subnetwork_id: Series[pd.Int64Dtype] = pa.Field( + subnetwork_id: Series[pd.Int32Dtype] = pa.Field( default=pd.NA, nullable=True, coerce=True ) geometry: GeoSeries[Any] = pa.Field(default=None, nullable=True) @@ -70,12 +71,12 @@ def add( table_to_append = GeoDataFrame[EdgeSchema]( data={ "from_node_type": pd.Series([from_node.node_type], dtype=str), - "from_node_id": pd.Series([from_node.node_id], dtype=int), + "from_node_id": pd.Series([from_node.node_id], dtype=np.int32), "to_node_type": pd.Series([to_node.node_type], dtype=str), - "to_node_id": pd.Series([to_node.node_id], dtype=int), + "to_node_id": pd.Series([to_node.node_id], dtype=np.int32), "edge_type": pd.Series([edge_type], dtype=str), "name": pd.Series([name], dtype=str), - "subnetwork_id": pd.Series([subnetwork_id], dtype=pd.Int64Dtype()), + "subnetwork_id": pd.Series([subnetwork_id], dtype=pd.Int32Dtype()), }, geometry=geometry_to_append, ) diff --git a/python/ribasim/ribasim/geometry/node.py b/python/ribasim/ribasim/geometry/node.py index d5916a56f..d77a40f99 100644 --- a/python/ribasim/ribasim/geometry/node.py +++ b/python/ribasim/ribasim/geometry/node.py @@ -6,6 +6,7 @@ import pandas as pd import pandera as pa from matplotlib.patches import Patch +from pandera.dtypes import Int32 from pandera.typing import Series from pandera.typing.geopandas import GeoSeries @@ -15,10 +16,10 @@ class NodeSchema(pa.SchemaModel): - node_id: Series[int] + node_id: Series[Int32] name: Series[str] = pa.Field(default="") node_type: Series[str] = pa.Field(default="") - subnetwork_id: Series[pd.Int64Dtype] = pa.Field( + subnetwork_id: Series[pd.Int32Dtype] = pa.Field( default=pd.NA, nullable=True, coerce=True ) geometry: GeoSeries[Any] = pa.Field(default=None, nullable=True) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 30c39270a..20064689d 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -4,6 +4,7 @@ from typing import Any import geopandas as gpd +import numpy as np import pandas as pd import tomli import tomli_w @@ -248,10 +249,10 @@ def reset_contextvar(self) -> "Model": def plot_control_listen(self, ax): df_listen_edge = pd.DataFrame( data={ - "control_node_id": pd.Series([], dtype="int"), - "control_node_type": pd.Series([], dtype="str"), - "listen_node_id": pd.Series([], dtype="int"), - "listen_node_type": pd.Series([], dtype="str"), + "control_node_id": pd.Series([], dtype=np.int32), + "control_node_type": pd.Series([], dtype=str), + "listen_node_id": pd.Series([], dtype=np.int32), + "listen_node_type": pd.Series([], dtype=str), } ) diff --git a/python/ribasim/ribasim/schemas.py b/python/ribasim/ribasim/schemas.py index 34dc9dba1..0cf033671 100644 --- a/python/ribasim/ribasim/schemas.py +++ b/python/ribasim/ribasim/schemas.py @@ -1,7 +1,7 @@ # Automatically generated file. Do not modify. import pandera as pa -from pandera.dtypes import Timestamp +from pandera.dtypes import Int32, Timestamp from pandera.typing import Series @@ -12,18 +12,18 @@ class Config: class BasinProfileSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) area: Series[float] = pa.Field(nullable=False) level: Series[float] = pa.Field(nullable=False) class BasinStateSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) level: Series[float] = pa.Field(nullable=False) class BasinStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) drainage: Series[float] = pa.Field(nullable=True) potential_evaporation: Series[float] = pa.Field(nullable=True) infiltration: Series[float] = pa.Field(nullable=True) @@ -32,14 +32,14 @@ class BasinStaticSchema(_BaseSchema): class BasinSubgridSchema(_BaseSchema): - subgrid_id: Series[int] = pa.Field(nullable=False, default=0) - node_id: Series[int] = pa.Field(nullable=False, default=0) + subgrid_id: Series[Int32] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) basin_level: Series[float] = pa.Field(nullable=False) subgrid_level: Series[float] = pa.Field(nullable=False) class BasinTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) drainage: Series[float] = pa.Field(nullable=True) potential_evaporation: Series[float] = pa.Field(nullable=True) @@ -49,80 +49,80 @@ class BasinTimeSchema(_BaseSchema): class DiscreteControlConditionSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) listen_node_type: Series[str] = pa.Field(nullable=False) - listen_node_id: Series[int] = pa.Field(nullable=False, default=0) + listen_node_id: Series[Int32] = pa.Field(nullable=False, default=0) variable: Series[str] = pa.Field(nullable=False) greater_than: Series[float] = pa.Field(nullable=False) look_ahead: Series[float] = pa.Field(nullable=True) class DiscreteControlLogicSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) truth_state: Series[str] = pa.Field(nullable=False) control_state: Series[str] = pa.Field(nullable=False) class FlowBoundaryStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) flow_rate: Series[float] = pa.Field(nullable=False) class FlowBoundaryTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) flow_rate: Series[float] = pa.Field(nullable=False) class FlowDemandStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) demand: Series[float] = pa.Field(nullable=False) - priority: Series[int] = pa.Field(nullable=False, default=0) + priority: Series[Int32] = pa.Field(nullable=False, default=0) class FlowDemandTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) demand: Series[float] = pa.Field(nullable=False) - priority: Series[int] = pa.Field(nullable=False, default=0) + priority: Series[Int32] = pa.Field(nullable=False, default=0) class FractionalFlowStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) fraction: Series[float] = pa.Field(nullable=False) control_state: Series[str] = pa.Field(nullable=True) class LevelBoundaryStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) level: Series[float] = pa.Field(nullable=False) class LevelBoundaryTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) level: Series[float] = pa.Field(nullable=False) class LevelDemandStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) min_level: Series[float] = pa.Field(nullable=False) max_level: Series[float] = pa.Field(nullable=False) - priority: Series[int] = pa.Field(nullable=False, default=0) + priority: Series[Int32] = pa.Field(nullable=False, default=0) class LevelDemandTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) min_level: Series[float] = pa.Field(nullable=False) max_level: Series[float] = pa.Field(nullable=False) - priority: Series[int] = pa.Field(nullable=False, default=0) + priority: Series[Int32] = pa.Field(nullable=False, default=0) class LinearResistanceStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) resistance: Series[float] = pa.Field(nullable=False) max_flow_rate: Series[float] = pa.Field(nullable=True) @@ -130,7 +130,7 @@ class LinearResistanceStaticSchema(_BaseSchema): class ManningResistanceStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) length: Series[float] = pa.Field(nullable=False) manning_n: Series[float] = pa.Field(nullable=False) @@ -140,7 +140,7 @@ class ManningResistanceStaticSchema(_BaseSchema): class OutletStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) flow_rate: Series[float] = pa.Field(nullable=False) min_flow_rate: Series[float] = pa.Field(nullable=True) @@ -150,10 +150,10 @@ class OutletStaticSchema(_BaseSchema): class PidControlStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) listen_node_type: Series[str] = pa.Field(nullable=False) - listen_node_id: Series[int] = pa.Field(nullable=False, default=0) + listen_node_id: Series[Int32] = pa.Field(nullable=False, default=0) target: Series[float] = pa.Field(nullable=False) proportional: Series[float] = pa.Field(nullable=False) integral: Series[float] = pa.Field(nullable=False) @@ -162,9 +162,9 @@ class PidControlStaticSchema(_BaseSchema): class PidControlTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) listen_node_type: Series[str] = pa.Field(nullable=False) - listen_node_id: Series[int] = pa.Field(nullable=False, default=0) + listen_node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) target: Series[float] = pa.Field(nullable=False) proportional: Series[float] = pa.Field(nullable=False) @@ -174,7 +174,7 @@ class PidControlTimeSchema(_BaseSchema): class PumpStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) flow_rate: Series[float] = pa.Field(nullable=False) min_flow_rate: Series[float] = pa.Field(nullable=True) @@ -183,7 +183,7 @@ class PumpStaticSchema(_BaseSchema): class TabulatedRatingCurveStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) level: Series[float] = pa.Field(nullable=False) flow_rate: Series[float] = pa.Field(nullable=False) @@ -191,29 +191,29 @@ class TabulatedRatingCurveStaticSchema(_BaseSchema): class TabulatedRatingCurveTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) level: Series[float] = pa.Field(nullable=False) flow_rate: Series[float] = pa.Field(nullable=False) class TerminalStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) class UserDemandStaticSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) demand: Series[float] = pa.Field(nullable=False) return_factor: Series[float] = pa.Field(nullable=False) min_level: Series[float] = pa.Field(nullable=False) - priority: Series[int] = pa.Field(nullable=False, default=0) + priority: Series[Int32] = pa.Field(nullable=False, default=0) class UserDemandTimeSchema(_BaseSchema): - node_id: Series[int] = pa.Field(nullable=False, default=0) + node_id: Series[Int32] = pa.Field(nullable=False, default=0) time: Series[Timestamp] = pa.Field(nullable=False) demand: Series[float] = pa.Field(nullable=False) return_factor: Series[float] = pa.Field(nullable=False) min_level: Series[float] = pa.Field(nullable=False) - priority: Series[int] = pa.Field(nullable=False, default=0) + priority: Series[Int32] = pa.Field(nullable=False, default=0) diff --git a/python/ribasim/tests/test_io.py b/python/ribasim/tests/test_io.py index 1a86f1b10..e0b316106 100644 --- a/python/ribasim/tests/test_io.py +++ b/python/ribasim/tests/test_io.py @@ -1,5 +1,6 @@ from datetime import datetime +import numpy as np import pytest import ribasim import tomli @@ -57,7 +58,8 @@ def test_basic_transient(basic_transient, tmp_path): __assert_equal(model_orig.edge.df, model_loaded.edge.df) time = model_loaded.basin.time - assert model_orig.basin.time.df.time[0] == time.df.time[0] + assert model_orig.basin.time.df.time.iloc[0] == time.df.time.iloc[0] + assert time.df.node_id.dtype == np.int32 __assert_equal(model_orig.basin.time.df, time.df) assert time.df.shape == (1468, 7) diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index d5f3b4207..3c4ded6bb 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -181,6 +181,8 @@ def test_node_table(basic): node = model.node_table() df = node.df assert df.geometry.is_unique + assert df.node_id.dtype == np.int32 + assert df.subnetwork_id.dtype == pd.Int32Dtype() assert df.node_type.iloc[0] == "Basin" assert df.node_type.iloc[-1] == "Terminal" diff --git a/python/ribasim_testmodels/ribasim_testmodels/backwater.py b/python/ribasim_testmodels/ribasim_testmodels/backwater.py index 3d60f5f08..a01d563e0 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/backwater.py +++ b/python/ribasim_testmodels/ribasim_testmodels/backwater.py @@ -18,7 +18,7 @@ def backwater_model(): node_type[0] = "FlowBoundary" node_type[-1] = "LevelBoundary" - ids = np.arange(1, node_type.size + 1, dtype=int) + ids = np.arange(1, node_type.size + 1, dtype=np.int32) model = ribasim.Model( starttime="2020-01-01", diff --git a/utils/gen_python.jl b/utils/gen_python.jl index 52b689716..2fd5db115 100644 --- a/utils/gen_python.jl +++ b/utils/gen_python.jl @@ -6,7 +6,7 @@ using OteraEngine using Ribasim pythontype(::Type{<:AbstractString}) = "Series[str]" -pythontype(::Type{<:Integer}) = "Series[int]" +pythontype(::Type{<:Integer}) = "Series[Int32]" pythontype(::Type{<:AbstractFloat}) = "Series[float]" pythontype(::Type{<:Number}) = "Series[float]" pythontype(::Type{<:Bool}) = "Series[pa.BOOL]" # pa.BOOL is a nullable boolean type, bool is not nullable diff --git a/utils/templates/schemas.py.jinja b/utils/templates/schemas.py.jinja index db2a8df50..1ff1a6a23 100644 --- a/utils/templates/schemas.py.jinja +++ b/utils/templates/schemas.py.jinja @@ -1,7 +1,7 @@ # Automatically generated file. Do not modify. import pandera as pa -from pandera.dtypes import Timestamp +from pandera.dtypes import Int32, Timestamp from pandera.typing import Series @@ -14,7 +14,7 @@ class _BaseSchema(pa.DataFrameModel): {% for m in models %} class {{m[:name]}}Schema(_BaseSchema): {% for f in m[:fields] %} - {% if (f[2] == "Series[int]") %} + {% if (f[2] == "Series[Int32]") %} {{ f[1] }}: {{ f[2] }} = pa.Field(nullable={{ f[3] }}, default=0) {% else %} {{ f[1] }}: {{ f[2] }} = pa.Field(nullable={{ f[3] }}) From 5b25cb01e4cc8c8c3419cae126f47e19c14c6c05 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Tue, 26 Mar 2024 11:47:39 +0100 Subject: [PATCH 010/158] Minimal pixi default environment (#1322) Only add dependencies to the default environment that are necessary to test Ribasim Python or Ribasim API. This should make it easier to keep track of which dependencies are necessary for what, and also reduce solve times. --- .github/workflows/core_testmodels.yml | 2 +- .github/workflows/core_tests.yml | 2 +- .github/workflows/docs.yml | 2 +- .github/workflows/python_codegen.yml | 2 +- .github/workflows/python_lint.yml | 2 +- .github/workflows/python_tests.yml | 2 +- .github/workflows/qgis.yml | 2 +- .../buildTypes/Ribasim_GenerateTestmodels.xml | 3 +- .../Ribasim_Linux_BuildLibribasim.xml | 3 +- .../Ribasim_Linux_BuildRibasimCli.xml | 3 +- .../Ribasim_Linux_TestRibasimApi.xml | 3 +- .../Ribasim_Linux_TestRibasimCli.xml | 3 +- .../Ribasim_Windows_BuildLibribasim.xml | 3 +- .../Ribasim_Windows_BuildRibasimCli.xml | 3 +- .../Ribasim_Windows_TestRibasimApi.xml | 3 +- .../Ribasim_Windows_TestRibasimCli.xml | 3 +- docs/contribute/index.qmd | 2 +- docs/contribute/qgis.qmd | 4 +- open-vscode.bat | 2 +- pixi.lock | 8426 ++++------------- pixi.toml | 76 +- 21 files changed, 1821 insertions(+), 6730 deletions(-) diff --git a/.github/workflows/core_testmodels.yml b/.github/workflows/core_testmodels.yml index 993a9dc4e..8833f6fe7 100644 --- a/.github/workflows/core_testmodels.yml +++ b/.github/workflows/core_testmodels.yml @@ -37,7 +37,7 @@ jobs: with: pixi-version: "latest" - name: Prepare pixi - run: pixi run install-ci + run: pixi run --environment=dev install-ci - name: Run testmodels with Ribasim Core run: | pixi run ribasim-core-testmodels diff --git a/.github/workflows/core_tests.yml b/.github/workflows/core_tests.yml index 0a765a530..d85f5ab2e 100644 --- a/.github/workflows/core_tests.yml +++ b/.github/workflows/core_tests.yml @@ -37,7 +37,7 @@ jobs: with: pixi-version: "latest" - name: Prepare pixi - run: pixi run install-ci + run: pixi run --environment=dev install-ci - name: Test Ribasim Core run: | pixi run test-ribasim-core-cov diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 3dbb49563..c0a59462e 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -28,7 +28,7 @@ jobs: with: pixi-version: "latest" - name: Prepare pixi - run: pixi run install-ci + run: pixi run --environment=dev install-ci - name: Check Quarto installation and all engines run: pixi run quarto-check diff --git a/.github/workflows/python_codegen.yml b/.github/workflows/python_codegen.yml index 3d6cac018..6f027ca04 100644 --- a/.github/workflows/python_codegen.yml +++ b/.github/workflows/python_codegen.yml @@ -20,7 +20,7 @@ jobs: with: pixi-version: "latest" - name: Prepare pixi - run: pixi run install-ci + run: pixi run --environment=dev install-ci - name: Test if codegen runs without errors run: pixi run codegen - name: Ensure that no code has been generated diff --git a/.github/workflows/python_lint.yml b/.github/workflows/python_lint.yml index 15bcb778e..3c4e1e57d 100644 --- a/.github/workflows/python_lint.yml +++ b/.github/workflows/python_lint.yml @@ -20,7 +20,7 @@ jobs: with: pixi-version: "latest" - name: Prepare pixi - run: pixi run install-ci + run: pixi run --environment=dev install-ci - name: Run mypy on python/ribasim run: | pixi run mypy-ribasim-python diff --git a/.github/workflows/python_tests.yml b/.github/workflows/python_tests.yml index 46743116f..9770ccc46 100644 --- a/.github/workflows/python_tests.yml +++ b/.github/workflows/python_tests.yml @@ -30,7 +30,7 @@ jobs: with: pixi-version: "latest" - name: Prepare pixi - run: pixi run --environment ${{ matrix.pixi-environment }} install-ci + run: pixi run --environment ${{ matrix.pixi-environment }} install-python - name: Test Ribasim Python run: pixi run --environment ${{ matrix.pixi-environment }} test-ribasim-python-cov - name: Upload coverage to Codecov diff --git a/.github/workflows/qgis.yml b/.github/workflows/qgis.yml index e8f46b333..6bc4d97fb 100644 --- a/.github/workflows/qgis.yml +++ b/.github/workflows/qgis.yml @@ -27,7 +27,7 @@ jobs: pixi-version: "latest" - name: Prepare pixi run: | - pixi run install-ci + pixi run --environment=dev install-ci - name: Run tests run: pixi run test-ribasim-qgis-cov - name: Upload coverage to Codecov diff --git a/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml b/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml index f385960e6..c2945c1aa 100644 --- a/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml +++ b/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml @@ -19,7 +19,7 @@ source /usr/share/Modules/init/bash module load pixi pixi --version -pixi run install-ci]]> +pixi run --environment=dev install-ci]]> @@ -56,4 +56,3 @@ pixi run generate-testmodels]]> - diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml index 6b59a4f78..411c2ddcf 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml @@ -19,7 +19,7 @@ source /usr/share/Modules/init/bash module load pixi pixi --version -pixi run install-ci]]> +pixi run --environment=dev install-ci]]> @@ -63,4 +63,3 @@ pixi run build-libribasim]]> - diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml index cd465d479..dc2bffb65 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml @@ -18,7 +18,7 @@ source /usr/share/Modules/init/bash module load pixi pixi --version -pixi run install-ci]]> +pixi run --environment=dev install-ci]]> @@ -70,4 +70,3 @@ pixi run build-ribasim-cli]]> - diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml index dd059e9da..7174a847a 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml @@ -19,7 +19,7 @@ source /usr/share/Modules/init/bash module load pixi pixi --version -pixi run install-ci]]> +pixi run --environment=dev install-ci]]> @@ -108,4 +108,3 @@ pixi run test-ribasim-api]]> - diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml index 8859f967b..8f64b9a8c 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml @@ -19,7 +19,7 @@ source /usr/share/Modules/init/bash module load pixi pixi --version -pixi run install-ci]]> +pixi run --environment=dev install-ci]]> @@ -108,4 +108,3 @@ pixi run test-ribasim-cli]]> - diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml index 142e850f2..4983b1a20 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml @@ -14,7 +14,7 @@ +pixi run --environment=dev install-ci]]> @@ -52,4 +52,3 @@ pixi run build-libribasim]]> - diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml index f1807c28d..f9c3f4f6a 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml @@ -12,7 +12,7 @@ - + @@ -58,4 +58,3 @@ pixi run build-ribasim-cli]]> - diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml index 0d444dd2f..5ed6dca71 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml @@ -13,7 +13,7 @@ - + @@ -97,4 +97,3 @@ - diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml index 0038e1143..7edcc1961 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml @@ -13,7 +13,7 @@ - + @@ -97,4 +97,3 @@ - diff --git a/docs/contribute/index.qmd b/docs/contribute/index.qmd index 2f787dee9..c35736711 100644 --- a/docs/contribute/index.qmd +++ b/docs/contribute/index.qmd @@ -35,7 +35,7 @@ First, set up pixi as described on their getting started [page](https://prefix.d Then set up the environment by running the following commands: ```sh -pixi run install +pixi run --environment=dev install ``` This will automatically install all required packages for development. diff --git a/docs/contribute/qgis.qmd b/docs/contribute/qgis.qmd index 062214d42..afaae6eef 100644 --- a/docs/contribute/qgis.qmd +++ b/docs/contribute/qgis.qmd @@ -5,7 +5,7 @@ title: "QGIS plugin development" # Set up the developer environment After you have installed the environment as described [here](index.qmd) you must still activate the QGIS plugins. -The simplest way to do this is by running `pixi run install-qgis-plugins`. +The simplest way to do this is by running `pixi run --environment=dev install-qgis-plugins`. It grabs the latest version of the iMOD QGIS plugin and it makes a symlink to the ribasim_qgis folder so that QGIS can find it. It also installs plugins that make it possible to reload and debug your plugin while QGIS is open. @@ -36,7 +36,7 @@ Then simply call `pixi run test-ribasim-qgis`. # Debugging -After installing the plugins via `pixi run install-qgis-plugins`. +After installing the plugins via `pixi run --environment=dev install-qgis-plugins`. Extra debugging tools are also installed in QGIS that is installed within your pixi environment. After you have started `pixi run qgis`, you can make alterations to the Python code and use the [Plugin Reloader](https://github.com/borysiasty/plugin_reloader) to reload the plugin without restarting QGIS. diff --git a/open-vscode.bat b/open-vscode.bat index 078d226d0..ae86837bf 100644 --- a/open-vscode.bat +++ b/open-vscode.bat @@ -1 +1 @@ -pixi run code . | exit +pixi run --environment=dev code . | exit diff --git a/pixi.lock b/pixi.lock index 782036e67..48ee66a1f 100644 --- a/pixi.lock +++ b/pixi.lock @@ -9,13 +9,6 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.11-hd590300_1.conda - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.6.0-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/anyio-4.3.0-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/argon2-cffi-23.1.0-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/argon2-cffi-bindings-21.2.0-py312h98912ed_4.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/arrow-1.3.0-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/asttokens-2.4.1-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/astunparse-1.6.3-pyhd8ed1ab_0.tar.bz2 - - conda: https://conda.anaconda.org/conda-forge/noarch/async-lru-2.0.4-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/attrs-23.2.0-pyh71513ae_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.16-haed3651_8.conda @@ -34,11 +27,7 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/azure-core-cpp-1.11.1-h91d86a7_1.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/azure-storage-blobs-cpp-12.10.0-h00ab1b0_1.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/azure-storage-common-cpp-12.5.0-h94269e2_4.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/babel-2.14.0-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/beartype-0.17.2-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/beautifulsoup4-4.12.3-pyha770c72_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/black-24.2.0-py312h7900ff3_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/bleach-6.1.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/blosc-1.21.5-h0f2a231_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/bmipy-2.0.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/bokeh-3.4.0-pyhd8ed1ab_0.conda @@ -46,17 +35,11 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-1.1.0-hd590300_1.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-bin-1.1.0-hd590300_1.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.1.0-py312h30efb56_1.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/build-0.7.0-pyhd8ed1ab_0.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.27.0-hd590300_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/cached-property-1.5.2-hd8ed1ab_1.tar.bz2 - - conda: https://conda.anaconda.org/conda-forge/noarch/cached_property-1.5.2-pyha770c72_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-h3faef2a_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/ceres-solver-2.2.0-h30ec75d_2.conda - conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2024.2.2-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/cffi-1.16.0-py312hf06ca03_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/cfgv-3.3.1-pyhd8ed1ab_0.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/cfitsio-4.4.0-hbdc6101_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/cftime-1.6.3-py312hc7c0aa3_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.2-pyhd8ed1ab_0.conda @@ -64,40 +47,20 @@ environments: - conda: https://conda.anaconda.org/conda-forge/noarch/click-plugins-1.1.1-py_0.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/cligj-0.7.2-pyhd8ed1ab_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/cloudpickle-3.0.0-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/cmarkgfm-0.8.0-py312h98912ed_3.conda - conda: https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_0.tar.bz2 - - conda: https://conda.anaconda.org/conda-forge/noarch/comm-0.2.2-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.2.0-py312h8572e83_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/coverage-7.4.4-py312h98912ed_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/cryptography-42.0.5-py312h241aef2_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/curl-8.6.0-hca28451_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/cytoolz-0.12.3-py312h98912ed_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/dart-sass-1.58.3-ha770c72_1.conda - conda: https://conda.anaconda.org/conda-forge/noarch/dask-2024.3.0-pyhd8ed1ab_1.conda - conda: https://conda.anaconda.org/conda-forge/noarch/dask-core-2024.3.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/dask-expr-1.0.2-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/noarch/dataclasses-0.8-pyhc8e2a94_3.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/linux-64/dbus-1.13.6-h5008d03_3.tar.bz2 - - conda: https://conda.anaconda.org/conda-forge/linux-64/debugpy-1.8.1-py312h30efb56_0.conda - 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"install-ribasim-python", - "install-ribasim-api", - "install-ribasim-testmodels", + ] } install = { depends_on = [ "install-ci", "install-qgis-plugins", "install-pre-commit", ] } -# Instantiate +# Julia update-registry-julia = "julia --eval='using Pkg; Registry.update()'" update-manifest-julia = "julia --project --eval='using Pkg; Pkg.update()'" instantiate-julia = "julia --project --eval='using Pkg; Pkg.instantiate()'" @@ -80,11 +91,7 @@ build = { "cmd" = "julia --project build.jl --app --lib", cwd = "build", depends "initialize-julia", ] } remove-artifacts = "julia --eval 'rm(joinpath(Base.DEPOT_PATH[1], \"artifacts\"), force=true, recursive=true)'" - -# Test -test-ribasim-python = "pytest --numprocesses=4 python/ribasim/tests" -test-ribasim-python-cov = "pytest --numprocesses=4 --cov=ribasim --cov-report=xml python/ribasim/tests" -test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=report.xml python/ribasim_api/tests" +# Tests test-ribasim-cli = "pytest --numprocesses=4 --basetemp=build/tests/temp --junitxml=report.xml build/tests" test-ribasim-core = { cmd = "julia --project=core --eval 'using Pkg; Pkg.test()'", depends_on = [ "generate-testmodels", @@ -95,8 +102,9 @@ test-ribasim-core-cov = { cmd = "julia --project=core --eval 'using Pkg; Pkg.tes generate-testmodels = "python utils/generate-testmodels.py" tests = { depends_on = ["lint", "test-ribasim-python", "test-ribasim-core"] } # Codegen -generate-python = { cmd = "julia --project utils/gen_python.jl && ruff format python/ribasim/ribasim/schemas.py" } -codegen = { depends_on = ["initialize-julia", "generate-python"] } +codegen = { cmd = "julia --project utils/gen_python.jl && ruff format python/ribasim/ribasim/schemas.py", depends_on = [ + "initialize-julia", +] } # Publish build-ribasim-python-wheel = { cmd = "rm --recursive --force dist && python -m build && twine check dist/*", cwd = "python/ribasim" } build-ribasim-api-wheel = { cmd = "rm --recursive --force dist && python -m build && twine check dist/*", cwd = "python/ribasim_api" } @@ -142,43 +150,45 @@ ribasim-core-testmodels = { cmd = "julia --project utils/testmodelrun.jl", depen github-release = "python utils/github-release.py" [dependencies] -build = "*" geopandas = "*" -gh = "*" hatchling = "*" -juliaup = "*" -jupyterlab = "*" -libgdal-arrow-parquet = "*" matplotlib = "*" -mypy = "*" netCDF4 = "*" -pandas = "==2.1.4" # Avoid excessive deprecation warnings from pandera (#984) +numpy = "*" +pandas = "==2.1.4" # Avoid excessive deprecation warnings from pandera (#984) pandas-stubs = "*" pandera = "*" pip = "*" -platformdirs = "*" -pre-commit = "*" pyarrow = "*" pydantic = ">=2" pyogrio = "*" -pyqt-stubs = "*" pytest = "*" pytest-cov = "*" pytest-xdist = "*" python = ">=3.10" +shapely = ">=2.0" +tomli = "*" +tomli-w = "*" +xmipy = "*" +xugrid = "*" +xarray = "*" + + +[feature.dev.dependencies] +build = "*" +gh = "*" +juliaup = "*" +jupyterlab = "*" +libgdal-arrow-parquet = "*" +mypy = "*" +pre-commit = "*" +pyqt-stubs = "*" qgis = "*" qgis-plugin-manager = "*" quarto = "*" quartodoc = "*" ruff = "*" -shapely = ">=2.0" -tomli = "*" -tomli-w = "*" twine = "*" -typing-extensions = ">=4.6" -xarray = "*" -xmipy = "*" -xugrid = "*" [feature.py312.dependencies] python = "3.12.*" @@ -190,9 +200,11 @@ python = "3.11.*" python = "3.10.*" [environments] -py312=["py312"] -py311=["py311"] -py310=["py310"] +default = { features = ["py312"], solve-group = "py312" } +dev = { features = ["py312", "dev"], solve-group = "py312" } +py312 = { features = ["py312"], solve-group = "py312" } +py311 = ["py311"] +py310 = ["py310"] [activation] scripts = ["utils/env_setup.sh"] From 0c02f9a356fd7e9db3bec53b598c37d5337ee270 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 26 Mar 2024 12:08:56 +0100 Subject: [PATCH 011/158] Add `model.to_xugrid()` (#1314) This adds an optional dependency on `xugrid`, to facilitate creating UGRID netCDFs, to support #969. For now I did not yet add any results to the dataset, but this could be done as a follow-up. This is just the network. --------- Co-authored-by: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> --- python/ribasim/ribasim/model.py | 62 ++++++++++++++++++++++++++++++ python/ribasim/ribasim/utils.py | 10 +++++ python/ribasim/tests/test_model.py | 13 +++++++ 3 files changed, 85 insertions(+) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 20064689d..ef6d0f315 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -47,6 +47,12 @@ FileModel, context_file_loading, ) +from ribasim.utils import MissingOptionalModule + +try: + import xugrid +except ImportError: + xugrid = MissingOptionalModule("xugrid") class Model(FileModel): @@ -342,3 +348,59 @@ def plot(self, ax=None, indicate_subnetworks: bool = True) -> Any: ax.legend(handles, labels, loc="lower left", bbox_to_anchor=(1, 0.5)) return ax + + def to_xugrid(self) -> xugrid.UgridDataset: + """Convert the network to a xugrid.UgridDataset.""" + node_df = self.node_table().df + + # This will need to be adopted for locally unique node IDs, + # otherwise the `node_lookup` with `argsort` is not correct. + if not node_df.node_id.is_unique: + raise ValueError("node_id must be unique") + node_df.sort_values("node_id", inplace=True) + + edge_df = self.edge.df.copy() + # We assume only the flow network is of interest. + edge_df = edge_df[edge_df.edge_type == "flow"] + + node_id = node_df.node_id.to_numpy() + from_node_id = edge_df.from_node_id.to_numpy() + to_node_id = edge_df.to_node_id.to_numpy() + + # from node_id to the node_dim index + node_lookup = pd.Series( + index=node_id, + data=node_id.argsort().astype(np.int32), + name="node_index", + ) + + if node_df.crs is None: + # TODO: can be removed when CRS is required, #1254 + projected = False + else: + projected = node_df.crs.is_projected + + grid = xugrid.Ugrid1d( + node_x=node_df.geometry.x, + node_y=node_df.geometry.y, + fill_value=-1, + edge_node_connectivity=np.column_stack( + ( + node_lookup[from_node_id], + node_lookup[to_node_id], + ) + ), + name="ribasim", + projected=projected, + crs=node_df.crs, + ) + + edge_dim = grid.edge_dimension + node_dim = grid.node_dimension + + uds = xugrid.UgridDataset(None, grid) + uds = uds.assign_coords(node_id=(node_dim, node_id)) + uds = uds.assign_coords(from_node_id=(edge_dim, from_node_id)) + uds = uds.assign_coords(to_node_id=(edge_dim, to_node_id)) + + return uds diff --git a/python/ribasim/ribasim/utils.py b/python/ribasim/ribasim/utils.py index 001b47862..93f368c10 100644 --- a/python/ribasim/ribasim/utils.py +++ b/python/ribasim/ribasim/utils.py @@ -5,3 +5,13 @@ def _pascal_to_snake(pascal_str): # Insert a '_' before all uppercase letters that are not at the start of the string # and convert the string to lowercase return re.sub(r"(? Date: Tue, 26 Mar 2024 13:12:18 +0100 Subject: [PATCH 012/158] Bump version number for release (#1323) I think https://github.com/Deltares/Ribasim/issues/1306 is important enough to warrant a quick release. --- Manifest.toml | 2 +- core/Project.toml | 2 +- core/test/data/config_test.toml | 2 +- core/test/data/logging_test_loglevel_debug.toml | 2 +- core/test/data/logging_test_no_loglevel.toml | 2 +- core/test/docs.toml | 2 +- pixi.toml | 2 +- python/ribasim/ribasim/__init__.py | 2 +- python/ribasim_api/ribasim_api/__init__.py | 2 +- ribasim_qgis/metadata.txt | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 42d87b52e..7018b5719 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1247,7 +1247,7 @@ version = "3.5.14" deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "Dictionaries", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimeZones", "TimerOutputs", "TranscodingStreams"] path = "core" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" -version = "2024.5.0" +version = "2024.6.0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] diff --git a/core/Project.toml b/core/Project.toml index 2ea2db8cd..68ea483a1 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -2,7 +2,7 @@ name = "Ribasim" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" authors = ["Deltares and contributors "] manifest = "../Manifest.toml" -version = "2024.5.0" +version = "2024.6.0" [deps] Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" diff --git a/core/test/data/config_test.toml b/core/test/data/config_test.toml index dbf0469ac..ec7c4b2d7 100644 --- a/core/test/data/config_test.toml +++ b/core/test/data/config_test.toml @@ -2,7 +2,7 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "../../generated_testmodels/lhm" results_dir = "../../generated_testmodels/lhm" -ribasim_version = "2024.5.0" +ribasim_version = "2024.6.0" [basin] time = "basin/time.arrow" diff --git a/core/test/data/logging_test_loglevel_debug.toml b/core/test/data/logging_test_loglevel_debug.toml index e25e35415..fd2aa60e4 100644 --- a/core/test/data/logging_test_loglevel_debug.toml +++ b/core/test/data/logging_test_loglevel_debug.toml @@ -2,7 +2,7 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "." results_dir = "results" -ribasim_version = "2024.5.0" +ribasim_version = "2024.6.0" [logging] verbosity = "debug" diff --git a/core/test/data/logging_test_no_loglevel.toml b/core/test/data/logging_test_no_loglevel.toml index 560b8742e..b02a3e9d9 100644 --- a/core/test/data/logging_test_no_loglevel.toml +++ b/core/test/data/logging_test_no_loglevel.toml @@ -2,4 +2,4 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "." results_dir = "results" -ribasim_version = "2024.5.0" +ribasim_version = "2024.6.0" diff --git a/core/test/docs.toml b/core/test/docs.toml index 9bc838934..238b03db5 100644 --- a/core/test/docs.toml +++ b/core/test/docs.toml @@ -7,7 +7,7 @@ endtime = 2021-01-01 # required input_dir = "." # required results_dir = "results" # required -ribasim_version = "2024.5.0" # required +ribasim_version = "2024.6.0" # required # Specific tables can also go into Arrow files rather than the database. # For large tables this can benefit from better compressed file sizes. diff --git a/pixi.toml b/pixi.toml index 7e8ff7331..4b0cd0b6c 100644 --- a/pixi.toml +++ b/pixi.toml @@ -1,6 +1,6 @@ [project] name = "Ribasim" -version = "2024.5.0" +version = "2024.6.0" description = "Water resources modeling" authors = ["Deltares and contributors "] channels = ["conda-forge"] diff --git a/python/ribasim/ribasim/__init__.py b/python/ribasim/ribasim/__init__.py index e388d3398..a1d88f979 100644 --- a/python/ribasim/ribasim/__init__.py +++ b/python/ribasim/ribasim/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.5.0" +__version__ = "2024.6.0" from ribasim.config import Allocation, Logging, Node, Solver diff --git a/python/ribasim_api/ribasim_api/__init__.py b/python/ribasim_api/ribasim_api/__init__.py index bbabe0560..fe3c6888f 100644 --- a/python/ribasim_api/ribasim_api/__init__.py +++ b/python/ribasim_api/ribasim_api/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.5.0" +__version__ = "2024.6.0" from ribasim_api.ribasim_api import RibasimApi diff --git a/ribasim_qgis/metadata.txt b/ribasim_qgis/metadata.txt index 65dc4da3e..efedfa688 100644 --- a/ribasim_qgis/metadata.txt +++ b/ribasim_qgis/metadata.txt @@ -7,7 +7,7 @@ name=Ribasim-QGIS qgisMinimumVersion=3.0 description=QGIS plugin to setup Ribasim models -version=2024.5.0 +version=2024.6.0 author=Deltares and contributors email=ribasim.info@deltares.nl From f0d6487ef358b1439d1dcbb590e20f9811708725 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 26 Mar 2024 15:46:58 +0100 Subject: [PATCH 013/158] Remove xugrid return type annotation, bump patch version (#1326) ``` def to_xugrid(self) -> xugrid.UgridDataset: ``` This return type annotation is removed, since it only works for required dependencies. --- Manifest.toml | 2 +- core/Project.toml | 2 +- core/test/data/config_test.toml | 2 +- core/test/data/logging_test_loglevel_debug.toml | 2 +- core/test/data/logging_test_no_loglevel.toml | 2 +- core/test/docs.toml | 2 +- pixi.toml | 2 +- python/ribasim/ribasim/__init__.py | 2 +- python/ribasim/ribasim/model.py | 2 +- python/ribasim_api/ribasim_api/__init__.py | 2 +- ribasim_qgis/metadata.txt | 2 +- 11 files changed, 11 insertions(+), 11 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 7018b5719..09316d88f 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1247,7 +1247,7 @@ version = "3.5.14" deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "Dictionaries", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimeZones", "TimerOutputs", "TranscodingStreams"] path = "core" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" -version = "2024.6.0" +version = "2024.6.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] diff --git a/core/Project.toml b/core/Project.toml index 68ea483a1..edfb9b7ed 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -2,7 +2,7 @@ name = "Ribasim" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" authors = ["Deltares and contributors "] manifest = "../Manifest.toml" -version = "2024.6.0" +version = "2024.6.1" [deps] Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" diff --git a/core/test/data/config_test.toml b/core/test/data/config_test.toml index ec7c4b2d7..10a24d614 100644 --- a/core/test/data/config_test.toml +++ b/core/test/data/config_test.toml @@ -2,7 +2,7 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "../../generated_testmodels/lhm" results_dir = "../../generated_testmodels/lhm" -ribasim_version = "2024.6.0" +ribasim_version = "2024.6.1" [basin] time = "basin/time.arrow" diff --git a/core/test/data/logging_test_loglevel_debug.toml b/core/test/data/logging_test_loglevel_debug.toml index fd2aa60e4..d3af856f6 100644 --- a/core/test/data/logging_test_loglevel_debug.toml +++ b/core/test/data/logging_test_loglevel_debug.toml @@ -2,7 +2,7 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "." results_dir = "results" -ribasim_version = "2024.6.0" +ribasim_version = "2024.6.1" [logging] verbosity = "debug" diff --git a/core/test/data/logging_test_no_loglevel.toml b/core/test/data/logging_test_no_loglevel.toml index b02a3e9d9..c854a8cb6 100644 --- a/core/test/data/logging_test_no_loglevel.toml +++ b/core/test/data/logging_test_no_loglevel.toml @@ -2,4 +2,4 @@ starttime = 2019-01-01 endtime = 2019-12-31 input_dir = "." results_dir = "results" -ribasim_version = "2024.6.0" +ribasim_version = "2024.6.1" diff --git a/core/test/docs.toml b/core/test/docs.toml index 238b03db5..b8bb8b066 100644 --- a/core/test/docs.toml +++ b/core/test/docs.toml @@ -7,7 +7,7 @@ endtime = 2021-01-01 # required input_dir = "." # required results_dir = "results" # required -ribasim_version = "2024.6.0" # required +ribasim_version = "2024.6.1" # required # Specific tables can also go into Arrow files rather than the database. # For large tables this can benefit from better compressed file sizes. diff --git a/pixi.toml b/pixi.toml index 4b0cd0b6c..2624ff1ec 100644 --- a/pixi.toml +++ b/pixi.toml @@ -1,6 +1,6 @@ [project] name = "Ribasim" -version = "2024.6.0" +version = "2024.6.1" description = "Water resources modeling" authors = ["Deltares and contributors "] channels = ["conda-forge"] diff --git a/python/ribasim/ribasim/__init__.py b/python/ribasim/ribasim/__init__.py index a1d88f979..3864983f2 100644 --- a/python/ribasim/ribasim/__init__.py +++ b/python/ribasim/ribasim/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.6.0" +__version__ = "2024.6.1" from ribasim.config import Allocation, Logging, Node, Solver diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index ef6d0f315..00c6b9f91 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -349,7 +349,7 @@ def plot(self, ax=None, indicate_subnetworks: bool = True) -> Any: return ax - def to_xugrid(self) -> xugrid.UgridDataset: + def to_xugrid(self): """Convert the network to a xugrid.UgridDataset.""" node_df = self.node_table().df diff --git a/python/ribasim_api/ribasim_api/__init__.py b/python/ribasim_api/ribasim_api/__init__.py index fe3c6888f..4ccd9e57f 100644 --- a/python/ribasim_api/ribasim_api/__init__.py +++ b/python/ribasim_api/ribasim_api/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.6.0" +__version__ = "2024.6.1" from ribasim_api.ribasim_api import RibasimApi diff --git a/ribasim_qgis/metadata.txt b/ribasim_qgis/metadata.txt index efedfa688..b436ff141 100644 --- a/ribasim_qgis/metadata.txt +++ b/ribasim_qgis/metadata.txt @@ -7,7 +7,7 @@ name=Ribasim-QGIS qgisMinimumVersion=3.0 description=QGIS plugin to setup Ribasim models -version=2024.6.0 +version=2024.6.1 author=Deltares and contributors email=ribasim.info@deltares.nl From 108101d8b13746d5942500206f5f32524006fac8 Mon Sep 17 00:00:00 2001 From: hofer_jn Date: Wed, 27 Mar 2024 09:18:58 +0100 Subject: [PATCH 014/158] TeamCity change in 'Ribasim / Windows' project: runners of 'Test ribasim_api' build configuration were updated --- .../buildTypes/Ribasim_Windows_TestRibasimApi.xml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml index 5ed6dca71..bb6b05130 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml @@ -13,7 +13,7 @@ - + @@ -97,3 +97,4 @@ + From e0dd9cf7e689b252d0c98e64b1ecaeb6c84aaf8c Mon Sep 17 00:00:00 2001 From: hofer_jn Date: Wed, 27 Mar 2024 09:19:26 +0100 Subject: [PATCH 015/158] TeamCity change in 'Ribasim / Linux' project: runners of 'Test ribasim_api' build configuration were updated --- .../Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml index 7174a847a..0743918f0 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml @@ -19,7 +19,7 @@ source /usr/share/Modules/init/bash module load pixi pixi --version -pixi run --environment=dev install-ci]]> +pixi run install-python]]> @@ -108,3 +108,4 @@ pixi run test-ribasim-api]]> + From 1b784c3074ea2761fad24bdc706ce3a306d37fb3 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Wed, 27 Mar 2024 13:53:01 +0100 Subject: [PATCH 016/158] Run testmodels in parallel (#1325) Fixes #1302, by spreading out the running of test models over four threads. Before: ``` 364.921784 seconds (562.47 M allocations: 40.793 GiB, 3.96% gc time, 61.46% compilation time: <1% of which was recompilation) ``` After: ``` 264.766728 seconds (584.52 M allocations: 41.778 GiB, 3.79% gc time, 222.78% compilation time: <1% of which was recompilation) ``` I assume on CI the relative speed increase will be a bit better though. --- pixi.toml | 2 +- utils/testmodelrun.jl | 22 ++++++++++++---------- 2 files changed, 13 insertions(+), 11 deletions(-) diff --git a/pixi.toml b/pixi.toml index 2624ff1ec..c47bc8273 100644 --- a/pixi.toml +++ b/pixi.toml @@ -142,7 +142,7 @@ mypy-ribasim-qgis = "mypy ribasim_qgis" ribasim-core = { cmd = "julia --project=core -e 'using Ribasim; Ribasim.main(ARGS)'", depends_on = [ "initialize-julia", ] } -ribasim-core-testmodels = { cmd = "julia --project utils/testmodelrun.jl", depends_on = [ +ribasim-core-testmodels = { cmd = "julia --project --threads=4 utils/testmodelrun.jl", depends_on = [ "generate-testmodels", "initialize-julia", ] } diff --git a/utils/testmodelrun.jl b/utils/testmodelrun.jl index fd8c26cfc..9862829f8 100644 --- a/utils/testmodelrun.jl +++ b/utils/testmodelrun.jl @@ -1,4 +1,4 @@ -using Ribasim +import Ribasim include("utils.jl") @@ -7,21 +7,23 @@ function main(ARGS) n_model = length(toml_paths) n_pass = 0 n_fail = 0 + lk = ReentrantLock() failed = String[] - for toml_path in toml_paths + Threads.@threads for toml_path in toml_paths modelname = basename(dirname(toml_path)) - @info "Running model $modelname" - if Ribasim.main(toml_path) != 0 - @error "Simulation failed" modelname - push!(failed, modelname) - n_fail += 1 - else - n_pass += 1 + ret_code = Ribasim.main(toml_path) + lock(lk) do + if ret_code != 0 + push!(failed, modelname) + n_fail += 1 + else + n_pass += 1 + end end end - @info "Ran $n_model models, $n_pass passed, $n_fail failed." + println("Ran $n_model models, $n_pass passed, $n_fail failed.\n") if n_fail > 0 println("Failed models:") foreach(println, failed) From af6b1adb92b58f44edccb7ea3a7256c57ffcf399 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Thu, 28 Mar 2024 13:22:36 +0100 Subject: [PATCH 017/158] Write full Node table once (#1312) Co-authored-by: Hofer-Julian Co-authored-by: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> --- python/ribasim/ribasim/input_base.py | 7 ++++++- python/ribasim/ribasim/model.py | 18 +++++++++--------- 2 files changed, 15 insertions(+), 10 deletions(-) diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index 3b6ec99b6..98a26ffc1 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -32,6 +32,7 @@ validate_call, ) +import ribasim from ribasim.types import FilePath __all__ = ("TableModel",) @@ -424,7 +425,11 @@ def _layername(cls, field: str) -> str: def _tables(self) -> Generator[TableModel[Any], Any, None]: for key in self.fields(): attr = getattr(self, key) - if isinstance(attr, TableModel) and attr.df is not None: + if ( + isinstance(attr, TableModel) + and (attr.df is not None) + and not (isinstance(attr, ribasim.geometry.node.NodeTable)) + ): yield attr def node_ids(self) -> set[int]: diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 00c6b9f91..f6d208890 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -3,7 +3,6 @@ from pathlib import Path from typing import Any -import geopandas as gpd import numpy as np import pandas as pd import tomli @@ -143,18 +142,19 @@ def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): db_path.unlink(missing_ok=True) context_file_loading.get()["database"] = db_path self.edge._save(directory, input_dir) - for sub in self._nodes(): - sub._save(directory, input_dir) + node = self.node_table() # Temporarily require unique node_id for #1262 # and copy them to the fid for #1306. - df = gpd.read_file(db_path, layer="Node") - if not df["node_id"].is_unique: + if not node.df["node_id"].is_unique: raise ValueError("node_id must be unique") - df.set_index("node_id", drop=False, inplace=True) - df.sort_index(inplace=True) - df.index.name = "fid" - df.to_file(db_path, layer="Node", driver="GPKG", index=True) + node.df.set_index("node_id", drop=False, inplace=True) + node.df.sort_index(inplace=True) + node.df.index.name = "fid" + node._save(directory, input_dir) + + for sub in self._nodes(): + sub._save(directory, input_dir) def node_table(self) -> NodeTable: """Compute the full NodeTable from all node types.""" From c56a89a84c54c963d1096ab1e335a0f3f457cbc4 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Thu, 28 Mar 2024 16:06:39 +0100 Subject: [PATCH 018/158] Stop printing warnings when you can't read from database file (#1332) --- python/ribasim/ribasim/input_base.py | 1 - 1 file changed, 1 deletion(-) diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index 98a26ffc1..d728b7462 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -363,7 +363,6 @@ def _from_db(cls, path: FilePath, table: str): if exists(connection, table): df = gpd.read_file(path, layer=table, fid_as_index=True) else: - print(f"Can't read from {path}:{table}") df = None return df From db46d1e45aca519fa772ba8438579a968ab60744 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 28 Mar 2024 16:18:26 +0100 Subject: [PATCH 019/158] Split vertical fluxes on basin (#1300) Fixes https://github.com/Deltares/Ribasim/issues/661. --------- Co-authored-by: Martijn Visser --- core/src/allocation_optim.jl | 6 +- core/src/bmi.jl | 8 ++- core/src/callback.jl | 126 +++++++++++++++++------------------ core/src/graph.jl | 42 ------------ core/src/model.jl | 3 +- core/src/parameter.jl | 42 ++++++------ core/src/read.jl | 41 ++++++++---- core/src/solve.jl | 80 +++++++++------------- core/src/util.jl | 38 +++++++++++ core/src/write.jl | 56 +++++++++++----- core/test/bmi_test.jl | 2 + core/test/run_models_test.jl | 53 ++++++++++----- core/test/time_test.jl | 75 ++++++++++++++++++--- core/test/utils_test.jl | 2 + docs/core/usage.qmd | 32 +++++---- 15 files changed, 360 insertions(+), 246 deletions(-) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 17e9eab37..6f3606d4b 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -321,9 +321,13 @@ function get_basin_data( node_id::NodeID, ) (; graph, basin, level_demand) = p + (; vertical_flux) = basin (; Δt_allocation) = allocation_model @assert node_id.type == NodeType.Basin - influx = get_flow(graph, node_id, 0.0) + vertical_flux = get_tmp(vertical_flux, 0) + _, basin_idx = id_index(basin.node_id, node_id) + # NOTE: Instantaneous + influx = get_influx(basin, node_id) _, basin_idx = id_index(basin.node_id, node_id) storage_basin = u.storage[basin_idx] control_inneighbors = inneighbor_labels_type(graph, node_id, EdgeType.control) diff --git a/core/src/bmi.jl b/core/src/bmi.jl index 39a77afb7..7414d3dfe 100644 --- a/core/src/bmi.jl +++ b/core/src/bmi.jl @@ -37,9 +37,13 @@ function BMI.get_value_ptr(model::Model, name::AbstractString) elseif name == "basin.level" get_tmp(model.integrator.p.basin.current_level, 0) elseif name == "basin.infiltration" - model.integrator.p.basin.infiltration + get_tmp(model.integrator.p.basin.vertical_flux, 0).infiltration elseif name == "basin.drainage" - model.integrator.p.basin.drainage + get_tmp(model.integrator.p.basin.vertical_flux, 0).drainage + elseif name == "basin.infiltration_integrated" + model.integrator.p.basin.vertical_flux_bmi.infiltration + elseif name == "basin.drainage_integrated" + model.integrator.p.basin.vertical_flux_bmi.drainage elseif name == "basin.subgrid_level" model.integrator.p.subgrid.level elseif name == "user_demand.demand" diff --git a/core/src/callback.jl b/core/src/callback.jl index 9f3db5c1a..8aa34f519 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -36,13 +36,13 @@ function create_callbacks( (; starttime, basin, tabulated_rating_curve, discrete_control) = parameters callbacks = SciMLBase.DECallback[] + integrating_flows_cb = FunctionCallingCallback(integrate_flows!; func_start = false) + push!(callbacks, integrating_flows_cb) + tstops = get_tstops(basin.time.time, starttime) basin_cb = PresetTimeCallback(tstops, update_basin; save_positions = (false, false)) push!(callbacks, basin_cb) - integrating_flows_cb = FunctionCallingCallback(integrate_flows!; func_start = false) - push!(callbacks, integrating_flows_cb) - tstops = get_tstops(tabulated_rating_curve.time.time, starttime) tabulated_rating_curve_cb = PresetTimeCallback( tstops, @@ -61,16 +61,17 @@ function create_callbacks( push!(callbacks, allocation_cb) end + # If saveat is a vector which contains 0.0 this callback will still be called + # at t = 0.0 despite save_start = false + saveat = saveat isa Vector ? filter(x -> x != 0.0, saveat) : saveat + saved_vertical_flux = SavedValues(Float64, typeof(basin.vertical_flux_integrated)) + save_vertical_flux_cb = + SavingCallback(save_vertical_flux, saved_vertical_flux; saveat, save_start = false) + push!(callbacks, save_vertical_flux_cb) + # save the flows over time, as a Vector of the nonzeros(flow) saved_flow = SavedValues(Float64, Vector{Float64}) - save_flow_cb = SavingCallback( - save_flow, - saved_flow; - # If saveat is a vector which contains 0.0 this callback will still be called - # at t = 0.0 despite save_start = false - saveat = saveat isa Vector ? filter(x -> x != 0.0, saveat) : saveat, - save_start = false, - ) + save_flow_cb = SavingCallback(save_flow, saved_flow; saveat, save_start = false) push!(callbacks, save_flow_cb) # interpolate the levels @@ -85,7 +86,7 @@ function create_callbacks( push!(callbacks, export_cb) end - saved = SavedResults(saved_flow, saved_subgrid_level) + saved = SavedResults(saved_flow, saved_vertical_flux, saved_subgrid_level) n_conditions = length(discrete_control.node_id) if n_conditions > 0 @@ -108,27 +109,20 @@ Integrate flows over the last timestep """ function integrate_flows!(u, t, integrator)::Nothing (; p, dt) = integrator - (; graph, user_demand) = p - (; - flow, - flow_dict, - flow_vertical, - flow_prev, - flow_vertical_prev, - flow_integrated, - flow_vertical_integrated, - ) = graph[] + (; graph, user_demand, basin) = p + (; flow, flow_dict, flow_prev, flow_integrated) = graph[] + (; vertical_flux, vertical_flux_prev, vertical_flux_integrated, vertical_flux_bmi) = + basin flow = get_tmp(flow, 0) - flow_vertical = get_tmp(flow_vertical, 0) - + vertical_flux = get_tmp(vertical_flux, 0) if !isempty(flow_prev) && isnan(flow_prev[1]) # If flow_prev is not populated yet copyto!(flow_prev, flow) - copyto!(flow_vertical_prev, flow_vertical) end @. flow_integrated += 0.5 * (flow + flow_prev) * dt - @. flow_vertical_integrated += 0.5 * (flow_vertical + flow_vertical_prev) * dt + @. vertical_flux_integrated += 0.5 * (vertical_flux + vertical_flux_prev) * dt + @. vertical_flux_bmi += 0.5 * (vertical_flux + vertical_flux_prev) * dt for (i, id) in enumerate(user_demand.node_id) src_id = inflow_id(graph, id) @@ -137,10 +131,37 @@ function integrate_flows!(u, t, integrator)::Nothing end copyto!(flow_prev, flow) - copyto!(flow_vertical_prev, flow_vertical) + copyto!(vertical_flux_prev, vertical_flux) return nothing end +"Compute the average flows over the last saveat interval and write +them to SavedValues" +function save_flow(u, t, integrator) + (; flow_integrated) = integrator.p.graph[] + + Δt = get_Δt(integrator) + flow_mean = copy(flow_integrated) + flow_mean ./= Δt + fill!(flow_integrated, 0.0) + + return flow_mean +end + +"Compute the average vertical fluxes over the last saveat interval and write +them to SavedValues" +function save_vertical_flux(u, t, integrator) + (; basin) = integrator.p + (; vertical_flux_integrated) = basin + + Δt = get_Δt(integrator) + vertical_flux_mean = copy(vertical_flux_integrated) + vertical_flux_mean ./= Δt + fill!(vertical_flux_integrated, 0.0) + + return vertical_flux_mean +end + """ Listens for changes in condition truths. """ @@ -430,36 +451,6 @@ function set_control_params!(p::Parameters, node_id::NodeID, control_state::Stri end end -"Compute the average flows over the last saveat interval and write -them to SavedValues" -function save_flow(u, t, integrator) - (; dt, p) = integrator - (; graph) = p - (; flow_integrated, flow_vertical_integrated, saveat) = graph[] - - Δt = if iszero(saveat) - dt - elseif isinf(saveat) - t - else - t_end = integrator.sol.prob.tspan[2] - if t_end - t > saveat - saveat - else - # The last interval might be shorter than saveat - rem = t % saveat - iszero(rem) ? saveat : rem - end - end - - mean_flow_all = vcat(flow_vertical_integrated, flow_integrated) - mean_flow_all ./= Δt - fill!(flow_vertical_integrated, 0.0) - fill!(flow_integrated, 0.0) - - return mean_flow_all -end - function update_subgrid_level!(integrator)::Nothing basin_level = get_tmp(integrator.p.basin.current_level, 0) subgrid = integrator.p.subgrid @@ -476,18 +467,21 @@ end "Load updates from 'Basin / time' into the parameters" function update_basin(integrator)::Nothing - (; basin) = integrator.p - (; node_id, time) = basin + (; p, u) = integrator + (; basin) = p + (; storage) = u + (; node_id, time, vertical_flux_from_input, vertical_flux, vertical_flux_prev) = basin t = datetime_since(integrator.t, integrator.p.starttime) + vertical_flux = get_tmp(vertical_flux, integrator.u) rows = searchsorted(time.time, t) timeblock = view(time, rows) table = (; - basin.precipitation, - basin.potential_evaporation, - basin.drainage, - basin.infiltration, + vertical_flux_from_input.precipitation, + vertical_flux_from_input.potential_evaporation, + vertical_flux_from_input.drainage, + vertical_flux_from_input.infiltration, ) for row in timeblock @@ -496,6 +490,12 @@ function update_basin(integrator)::Nothing set_table_row!(table, row, i) end + for (i, id) in enumerate(basin.node_id) + update_vertical_flux!(basin, storage, i) + end + + # Forget about vertical fluxes to handle discontinuous forcing from basin_update + copyto!(vertical_flux_prev, vertical_flux) return nothing end diff --git a/core/src/graph.jl b/core/src/graph.jl index 2d19c717d..cb453e88d 100644 --- a/core/src/graph.jl +++ b/core/src/graph.jl @@ -24,10 +24,6 @@ function create_graph(db::DB, config::Config, chunk_sizes::Vector{Int})::MetaGra flow_counter = 0 # Dictionary from flow edge to index in flow vector flow_dict = Dict{Tuple{NodeID, NodeID}, Int}() - # The number of nodes with vertical flow (interaction with outside of model) - flow_vertical_counter = 0 - # Dictionary from node ID to index in vertical flow vector - flow_vertical_dict = Dict{NodeID, Int}() graph = MetaGraph( DiGraph(); label_type = NodeID, @@ -49,10 +45,6 @@ function create_graph(db::DB, config::Config, chunk_sizes::Vector{Int})::MetaGra end graph[node_id] = NodeMetadata(Symbol(snake_case(row.node_type)), allocation_network_id) - if row.node_type in nonconservative_nodetypes - flow_vertical_counter += 1 - flow_vertical_dict[node_id] = flow_vertical_counter - end end errors = false @@ -105,12 +97,8 @@ function create_graph(db::DB, config::Config, chunk_sizes::Vector{Int})::MetaGra flow = zeros(flow_counter) flow_prev = fill(NaN, flow_counter) flow_integrated = zeros(flow_counter) - flow_vertical = zeros(flow_vertical_counter) - flow_vertical_prev = fill(NaN, flow_vertical_counter) - flow_vertical_integrated = zeros(flow_vertical_counter) if config.solver.autodiff flow = DiffCache(flow, chunk_sizes) - flow_vertical = DiffCache(flow_vertical, chunk_sizes) end graph_data = (; node_ids, @@ -120,10 +108,6 @@ function create_graph(db::DB, config::Config, chunk_sizes::Vector{Int})::MetaGra flow, flow_prev, flow_integrated, - flow_vertical_dict, - flow_vertical, - flow_vertical_prev, - flow_vertical_integrated, config.solver.saveat, ) graph = @set graph.graph_data = graph_data @@ -195,15 +179,6 @@ function set_flow!(graph::MetaGraph, id_src::NodeID, id_dst::NodeID, q::Number): return nothing end -""" -Set the given flow q on the horizontal (self-loop) edge from id to id. -""" -function set_flow!(graph::MetaGraph, id::NodeID, q::Number)::Nothing - (; flow_vertical_dict, flow_vertical) = graph[] - get_tmp(flow_vertical, q)[flow_vertical_dict[id]] = q - return nothing -end - """ Add the given flow q to the existing flow over the edge between the given nodes. """ @@ -213,15 +188,6 @@ function add_flow!(graph::MetaGraph, id_src::NodeID, id_dst::NodeID, q::Number): return nothing end -""" -Add the given flow q to the flow over the edge on the horizontal (self-loop) edge from id to id. -""" -function add_flow!(graph::MetaGraph, id::NodeID, q::Number)::Nothing - (; flow_vertical_dict, flow_vertical) = graph[] - get_tmp(flow_vertical, q)[flow_vertical_dict[id]] += q - return nothing -end - """ Get the flow over the given edge (val is needed for get_tmp from ForwardDiff.jl). """ @@ -230,14 +196,6 @@ function get_flow(graph::MetaGraph, id_src::NodeID, id_dst::NodeID, val)::Number return get_tmp(flow, val)[flow_dict[id_src, id_dst]] end -""" -Get the flow over the given horizontal (selfloop) edge (val is needed for get_tmp from ForwardDiff.jl). -""" -function get_flow(graph::MetaGraph, id::NodeID, val)::Number - (; flow_vertical_dict, flow_vertical) = graph[] - return get_tmp(flow_vertical, val)[flow_vertical_dict[id]] -end - """ Get the inneighbor node IDs of the given node ID (label) over the given edge type in the graph. diff --git a/core/src/model.jl b/core/src/model.jl index afa24347e..111407a34 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -1,5 +1,6 @@ -struct SavedResults +struct SavedResults{V1 <: ComponentVector{Float64}} flow::SavedValues{Float64, Vector{Float64}} + vertical_flux::SavedValues{Float64, V1} subgrid_level::SavedValues{Float64, Vector{Float64}} end diff --git a/core/src/parameter.jl b/core/src/parameter.jl index e1d150ce1..214d056a4 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -151,12 +151,14 @@ else T = Vector{Float64} end """ -struct Basin{T, C} <: AbstractParameterNode +struct Basin{T, C, V1, V2, V3} <: AbstractParameterNode node_id::Indices{NodeID} - precipitation::Vector{Float64} - potential_evaporation::Vector{Float64} - drainage::Vector{Float64} - infiltration::Vector{Float64} + # Vertical fluxes + vertical_flux_from_input::V1 + vertical_flux::V2 + vertical_flux_prev::V3 + vertical_flux_integrated::V3 + vertical_flux_bmi::V3 # Cache this to avoid recomputation current_level::T current_area::T @@ -171,10 +173,11 @@ struct Basin{T, C} <: AbstractParameterNode function Basin( node_id, - precipitation, - potential_evaporation, - drainage, - infiltration, + vertical_flux_from_input::V1, + vertical_flux::V2, + vertical_flux_prev::V3, + vertical_flux_integrated::V3, + vertical_flux_bmi::V3, current_level::T, current_area::T, area, @@ -182,15 +185,16 @@ struct Basin{T, C} <: AbstractParameterNode storage, demand, time::StructVector{BasinTimeV1, C, Int}, - ) where {T, C} + ) where {T, C, V1, V2, V3} is_valid = valid_profiles(node_id, level, area) is_valid || error("Invalid Basin / profile table.") - return new{T, C}( + return new{T, C, V1, V2, V3}( node_id, - precipitation, - potential_evaporation, - drainage, - infiltration, + vertical_flux_from_input, + vertical_flux, + vertical_flux_prev, + vertical_flux_integrated, + vertical_flux_bmi, current_level, current_area, area, @@ -553,7 +557,7 @@ struct Subgrid end # TODO Automatically add all nodetypes here -struct Parameters{T, C1, C2} +struct Parameters{T, C1, C2, V1, V2, V3} starttime::DateTime graph::MetaGraph{ Int64, @@ -569,17 +573,13 @@ struct Parameters{T, C1, C2} flow::T, flow_prev::Vector{Float64}, flow_integrated::Vector{Float64}, - flow_vertical_dict::Dict{NodeID, Int}, - flow_vertical::T, - flow_vertical_prev::Vector{Float64}, - flow_vertical_integrated::Vector{Float64}, saveat::Float64, }, MetaGraphsNext.var"#11#13", Float64, } allocation::Allocation - basin::Basin{T, C1} + basin::Basin{T, C1, V1, V2, V3} linear_resistance::LinearResistance manning_resistance::ManningResistance tabulated_rating_curve::TabulatedRatingCurve{C2} diff --git a/core/src/read.jl b/core/src/read.jl index ccf7e9704..0ae86147d 100644 --- a/core/src/read.jl +++ b/core/src/read.jl @@ -488,15 +488,11 @@ function Basin(db::DB, config::Config, chunk_sizes::Vector{Int})::Basin current_level = zeros(n) current_area = zeros(n) - if config.solver.autodiff - current_level = DiffCache(current_level, chunk_sizes) - current_area = DiffCache(current_area, chunk_sizes) - end - - precipitation = zeros(length(node_id)) - potential_evaporation = zeros(length(node_id)) - drainage = zeros(length(node_id)) - infiltration = zeros(length(node_id)) + precipitation = zeros(n) + potential_evaporation = zeros(n) + evaporation = zeros(n) + drainage = zeros(n) + infiltration = zeros(n) table = (; precipitation, potential_evaporation, drainage, infiltration) area, level, storage = create_storage_tables(db, config) @@ -509,14 +505,33 @@ function Basin(db::DB, config::Config, chunk_sizes::Vector{Int})::Basin set_current_value!(table, node_id, time, config.starttime) check_no_nans(table, "Basin") + vertical_flux_from_input = + ComponentVector(; precipitation, potential_evaporation, drainage, infiltration) + vertical_flux = ComponentVector(; + precipitation = copy(precipitation), + evaporation, + drainage = copy(drainage), + infiltration = copy(infiltration), + ) + vertical_flux_prev = zero(vertical_flux) + vertical_flux_integrated = zero(vertical_flux) + vertical_flux_bmi = zero(vertical_flux) + + if config.solver.autodiff + current_level = DiffCache(current_level, chunk_sizes) + current_area = DiffCache(current_area, chunk_sizes) + vertical_flux = DiffCache(vertical_flux, chunk_sizes) + end + demand = zeros(length(node_id)) return Basin( Indices(NodeID.(NodeType.Basin, node_id)), - precipitation, - potential_evaporation, - drainage, - infiltration, + vertical_flux_from_input, + vertical_flux, + vertical_flux_prev, + vertical_flux_integrated, + vertical_flux_bmi, current_level, current_area, area, diff --git a/core/src/solve.jl b/core/src/solve.jl index df9f09d4d..f581fc591 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -14,13 +14,12 @@ function water_balance!( du .= 0.0 get_tmp(graph[].flow, storage) .= 0.0 - get_tmp(graph[].flow_vertical, storage) .= 0.0 # Ensures current_* vectors are current set_current_basin_properties!(basin, storage) # Basin forcings - formulate_basins!(du, basin, graph, storage) + formulate_basins!(du, basin, storage) # First formulate intermediate flows formulate_flows!(p, storage, t) @@ -52,34 +51,42 @@ end Smoothly let the evaporation flux go to 0 when at small water depths Currently at less than 0.1 m. """ +function update_vertical_flux!(basin::Basin, storage::AbstractVector, i::Int)::Nothing + (; current_level, current_area, vertical_flux_from_input, vertical_flux) = basin + current_level = get_tmp(current_level, storage) + current_area = get_tmp(current_area, storage) + vertical_flux = get_tmp(vertical_flux, storage) + + level = current_level[i] + area = current_area[i] + + bottom = basin.level[i][1] + fixed_area = basin.area[i][end] + depth = max(level - bottom, 0.0) + factor = reduction_factor(depth, 0.1) + + precipitation = fixed_area * vertical_flux_from_input.precipitation[i] + evaporation = area * factor * vertical_flux_from_input.potential_evaporation[i] + drainage = vertical_flux_from_input.drainage[i] + infiltration = factor * vertical_flux_from_input.infiltration[i] + + vertical_flux.precipitation[i] = precipitation + vertical_flux.evaporation[i] = evaporation + vertical_flux.drainage[i] = drainage + vertical_flux.infiltration[i] = infiltration + + return nothing +end + function formulate_basins!( du::AbstractVector, basin::Basin, - graph::MetaGraph, storage::AbstractVector, )::Nothing - (; node_id, current_level, current_area) = basin - current_level = get_tmp(current_level, storage) - current_area = get_tmp(current_area, storage) - - for (i, id) in enumerate(node_id) + for (i, id) in enumerate(basin.node_id) # add all precipitation that falls within the profile - level = current_level[i] - area = current_area[i] - - bottom = basin.level[i][1] - fixed_area = basin.area[i][end] - depth = max(level - bottom, 0.0) - factor = reduction_factor(depth, 0.1) - - precipitation = fixed_area * basin.precipitation[i] - evaporation = area * factor * basin.potential_evaporation[i] - drainage = basin.drainage[i] - infiltration = factor * basin.infiltration[i] - - influx = precipitation - evaporation + drainage - infiltration - du.storage[i] += influx - set_flow!(graph, id, influx) + update_vertical_flux!(basin, storage, i) + du.storage[i] += get_influx(basin, i) end return nothing end @@ -303,7 +310,6 @@ function formulate_flow!( # Return flow is immediate set_flow!(graph, id, dst_id, q * return_factor[i]) - set_flow!(graph, id, -q * (1 - return_factor[i])) end return nothing end @@ -505,28 +511,6 @@ function formulate_flow!( return nothing end -function formulate_flow!( - level_boundary::LevelBoundary, - p::Parameters, - storage::AbstractVector, - t::Number, -)::Nothing - (; graph) = p - (; node_id) = level_boundary - - for id in node_id - for in_id in inflow_ids(graph, id) - q = get_flow(graph, in_id, id, storage) - add_flow!(graph, id, -q) - end - for out_id in outflow_ids(graph, id) - q = get_flow(graph, id, out_id, storage) - add_flow!(graph, id, q) - end - end - return nothing -end - function formulate_flow!( flow_boundary::FlowBoundary, p::Parameters, @@ -547,7 +531,6 @@ function formulate_flow!( # Adding water is always possible set_flow!(graph, id, dst_id, rate) - set_flow!(graph, id, rate) end end end @@ -663,6 +646,5 @@ function formulate_flows!(p::Parameters, storage::AbstractVector, t::Number)::No # do these last since they rely on formulated input flows formulate_flow!(fractional_flow, p, storage, t) - formulate_flow!(level_boundary, p, storage, t) formulate_flow!(terminal, p, storage, t) end diff --git a/core/src/util.jl b/core/src/util.jl index 3b2131d1e..879f89726 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -707,3 +707,41 @@ function Base.get( nothing end end + +""" +Get the time interval between (flow) saves +""" +function get_Δt(integrator)::Float64 + (; p, t, dt) = integrator + (; saveat) = p.graph[] + if iszero(saveat) + dt + elseif isinf(saveat) + t + else + t_end = integrator.sol.prob.tspan[2] + if t_end - t > saveat + saveat + else + # The last interval might be shorter than saveat + rem = t % saveat + iszero(rem) ? saveat : rem + end + end +end + +function get_influx(basin::Basin, node_id::NodeID)::Float64 + has_index, basin_idx = id_index(basin.node_id, node_id) + if !has_index + error("Sum of vertical fluxes requested for non-basin $id.") + end + return get_influx(basin, basin_idx) +end + +function get_influx(basin::Basin, basin_idx::Int)::Float64 + (; vertical_flux) = basin + vertical_flux = get_tmp(vertical_flux, 0) + (; precipitation, evaporation, drainage, infiltration) = vertical_flux + return precipitation[basin_idx] - evaporation[basin_idx] + drainage[basin_idx] - + infiltration[basin_idx] +end diff --git a/core/src/write.jl b/core/src/write.jl index 9f855e324..4964f1754 100644 --- a/core/src/write.jl +++ b/core/src/write.jl @@ -84,15 +84,53 @@ function basin_table( node_id::Vector{Int32}, storage::Vector{Float64}, level::Vector{Float64}, + precipitation::Vector{Union{Missing, Float64}}, + evaporation::Vector{Union{Missing, Float64}}, + drainage::Vector{Union{Missing, Float64}}, + infiltration::Vector{Union{Missing, Float64}}, } + (; saved) = model + (; vertical_flux) = saved + data = get_storages_and_levels(model) + storage = vec(data.storage) + level = vec(data.level) + nbasin = length(data.node_id) ntsteps = length(data.time) + nrows = nbasin * ntsteps + + precipitation = Vector{Union{Missing, Float64}}(missing, nrows) + evaporation = Vector{Union{Missing, Float64}}(missing, nrows) + drainage = Vector{Union{Missing, Float64}}(missing, nrows) + infiltration = Vector{Union{Missing, Float64}}(missing, nrows) + + idx_row = 0 + + for vec in vertical_flux.saveval + for (precipitation_, evaporation_, drainage_, infiltration_) in + zip(vec.precipitation, vec.evaporation, vec.drainage, vec.infiltration) + idx_row += 1 + precipitation[idx_row] = precipitation_ + evaporation[idx_row] = evaporation_ + drainage[idx_row] = drainage_ + infiltration[idx_row] = infiltration_ + end + end time = repeat(data.time; inner = nbasin) node_id = repeat(Int32.(data.node_id); outer = ntsteps) - return (; time, node_id, storage = vec(data.storage), level = vec(data.level)) + return (; + time, + node_id, + storage, + level, + precipitation, + evaporation, + drainage, + infiltration, + ) end "Create a flow result table from the saved data" @@ -110,28 +148,14 @@ function flow_table( (; config, saved, integrator) = model (; t, saveval) = saved.flow (; graph) = integrator.p - (; flow_dict, flow_vertical_dict) = graph[] + (; flow_dict) = graph[] - # self-loops have no edge ID from_node_type = String[] from_node_id = Int32[] to_node_type = String[] to_node_id = Int32[] unique_edge_ids_flow = Union{Int32, Missing}[] - vertical_flow_node_ids = Vector{NodeID}(undef, length(flow_vertical_dict)) - for (node_id, index) in flow_vertical_dict - vertical_flow_node_ids[index] = node_id - end - - for id in vertical_flow_node_ids - push!(from_node_type, string(id.type)) - push!(from_node_id, id.value) - push!(to_node_type, string(id.type)) - push!(to_node_id, id.value) - push!(unique_edge_ids_flow, missing) - end - flow_edge_ids = Vector{Tuple{NodeID, NodeID}}(undef, length(flow_dict)) for (edge_id, index) in flow_dict flow_edge_ids[index] = edge_id diff --git a/core/test/bmi_test.jl b/core/test/bmi_test.jl index fd33ed312..7b37b2017 100644 --- a/core/test/bmi_test.jl +++ b/core/test/bmi_test.jl @@ -63,6 +63,8 @@ end "basin.level", "basin.infiltration", "basin.drainage", + "basin.infiltration_integrated", + "basin.drainage_integrated", "basin.subgrid_level", "user_demand.demand", "user_demand.realized", diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index 8f285c810..1a41b33b6 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -44,8 +44,26 @@ (DateTime, Union{Int32, Missing}, String, Int32, String, Int32, Float64), ) @test Tables.schema(basin) == Tables.Schema( - (:time, :node_id, :storage, :level), - (DateTime, Int32, Float64, Float64), + ( + :time, + :node_id, + :storage, + :level, + :precipitation, + :evaporation, + :drainage, + :infiltration, + ), + ( + DateTime, + Int32, + Float64, + Float64, + Union{Missing, Float64}, + Union{Missing, Float64}, + Union{Missing, Float64}, + Union{Missing, Float64}, + ), ) @test Tables.schema(control) == Tables.Schema( (:time, :control_node_id, :truth_state, :control_state), @@ -88,8 +106,8 @@ @testset "Results size" begin nsaved = length(tsaves(model)) @test nsaved > 10 - # t0 has no flow, 2 flow edges and 2 boundary condition flows - @test nrow(flow) == (nsaved - 1) * 4 + # t0 has no flow, 2 flow edges + @test nrow(flow) == (nsaved - 1) * 2 @test nrow(basin) == nsaved @test nrow(control) == 0 @test nrow(allocation) == 0 @@ -98,9 +116,9 @@ @testset "Results values" begin @test flow.time[1] == DateTime(2020) - @test coalesce.(flow.edge_id[1:4], -1) == [-1, -1, 1, 2] - @test flow.from_node_id[1:4] == [6, 922, 6, 0] - @test flow.to_node_id[1:4] == [6, 922, 0, 922] + @test coalesce.(flow.edge_id[1:2], -1) == [1, 2] + @test flow.from_node_id[1:2] == [6, 0] + @test flow.to_node_id[1:2] == [0, 922] @test basin.storage[1] ≈ 1.0 @test basin.level[1] ≈ 0.044711584 @@ -125,10 +143,11 @@ end model = Ribasim.run(toml_path) @test model isa Ribasim.Model @test model.integrator.u.storage ≈ [1000] - @test model.integrator.p.basin.precipitation == [0.0] - @test model.integrator.p.basin.potential_evaporation == [0.0] - @test model.integrator.p.basin.drainage == [0.0] - @test model.integrator.p.basin.infiltration == [0.0] + vertical_flux = Ribasim.get_tmp(model.integrator.p.basin.vertical_flux, 0) + @test vertical_flux.precipitation == [0.0] + @test vertical_flux.evaporation == [0.0] + @test vertical_flux.drainage == [0.0] + @test vertical_flux.infiltration == [0.0] @test successful_retcode(model) end @@ -142,10 +161,11 @@ end @test model isa Ribasim.Model stor = model.integrator.u.storage - prec = model.integrator.p.basin.precipitation - evap = model.integrator.p.basin.potential_evaporation - drng = model.integrator.p.basin.drainage - infl = model.integrator.p.basin.infiltration + vertical_flux = Ribasim.get_tmp(model.integrator.p.basin.vertical_flux, 0) + prec = vertical_flux.precipitation + evap = vertical_flux.evaporation + drng = vertical_flux.drainage + infl = vertical_flux.infiltration # The dynamic data has missings, but these are not set. @test prec == [0.0] @test evap == [0.0] @@ -235,7 +255,8 @@ end @test model isa Ribasim.Model @test successful_retcode(model) @test allunique(Ribasim.tsaves(model)) - @test length(model.integrator.p.basin.precipitation) == 4 + precipitation = Ribasim.get_tmp(model.integrator.p.basin.vertical_flux, 0).precipitation + @test length(precipitation) == 4 @test model.integrator.sol.u[end] ≈ Float32[472.02444, 472.02252, 367.6387, 1427.981] skip = Sys.isapple() end diff --git a/core/test/time_test.jl b/core/test/time_test.jl index 2410f1933..7977ad705 100644 --- a/core/test/time_test.jl +++ b/core/test/time_test.jl @@ -12,22 +12,77 @@ flow = DataFrame(Ribasim.flow_table(model)) # only from March to September the FlowBoundary varies is_summer(t::DateTime) = 3 <= month(t) < 10 - - flow_added_1 = - filter( - [:time, :from_node_id, :to_node_id] => - (t, from, to) -> is_summer(t) && from == 1 && to == 1, - flow, - ).flow_rate flow_1_to_2 = filter( [:time, :from_node_id, :to_node_id] => (t, from, to) -> is_summer(t) && from == 1 && to == 2, flow, ) - @test flow_added_1 == flow_1_to_2.flow_rate - t = Ribasim.seconds_since.(flow_1_to_2.time, model.config.starttime) flow_expected = @. 1 + sin(0.5 * π * (t - t[1]) / (t[end] - t[1]))^2 # some difference is expected since the modeled flow is for the period up to t - @test isapprox(flow_added_1, flow_expected, rtol = 0.005) + @test isapprox(flow_1_to_2.flow_rate, flow_expected, rtol = 0.005) +end + +@testitem "vertical_flux_means" begin + using DataFrames: DataFrame, transform!, ByRow + + toml_path = + normpath(@__DIR__, "../../generated_testmodels/basic_transient/ribasim.toml") + @test ispath(toml_path) + model = Ribasim.run(toml_path) + basin = model.integrator.p.basin + n_basin = length(basin.node_id) + basin_table = DataFrame(Ribasim.basin_table(model)) + + # No vertical flux data for last saveat + t_end = last(basin_table).time + data_end = filter(:time => t -> t == t_end, basin_table) + @test all(ismissing.(data_end.precipitation)) + @test all(ismissing.(data_end.evaporation)) + @test all(ismissing.(data_end.drainage)) + @test all(ismissing.(data_end.infiltration)) + + time_table = DataFrame(basin.time) + time_table[!, "basin_idx"] = [ + Ribasim.id_index(basin.node_id, node_id)[2] for + node_id in Ribasim.NodeID.(:Basin, time_table.node_id) + ] + time_table[!, "area"] = [ + Ribasim.get_area_and_level(basin, idx, storage)[1] for + (idx, storage) in zip(time_table.basin_idx, basin_table.storage) + ] + # Mean areas are sufficient to compute the mean flows + # (assuming the saveats coincide with the solver timepoints), + # as the potential evaporation is constant over the saveat intervals + time_table[!, "mean_area"] .= 0.0 + n_basins = length(basin.node_id) + n_times = length(unique(time_table.time)) - 1 + for basin_idx in 1:n_basins + for time_idx in 1:n_times + idx_1 = n_basins * (time_idx - 1) + basin_idx + idx_2 = n_basins * time_idx + basin_idx + mean_area = (time_table.area[idx_1] + time_table.area[idx_2]) / 2 + time_table.mean_area[idx_1] = mean_area + end + end + + filter!(:time => t -> t !== t_end, basin_table) + filter!(:time => t -> t !== t_end, time_table) + + @test all( + isapprox( + basin_table.evaporation, + time_table.mean_area .* time_table.potential_evaporation; + rtol = 1e-4, + ), + ) + + fixed_area = Dict( + id.value => basin.area[Ribasim.id_index(basin.node_id, id)[2]][end] for + id in basin.node_id + ) + transform!(time_table, :node_id => ByRow(id -> fixed_area[id]) => :fixed_area) + @test all( + basin_table.precipitation .≈ time_table.fixed_area .* time_table.precipitation, + ) end diff --git a/core/test/utils_test.jl b/core/test/utils_test.jl index b5a9ee0e3..c5e4d7af3 100644 --- a/core/test/utils_test.jl +++ b/core/test/utils_test.jl @@ -43,6 +43,7 @@ end [2.0, 3.0], [2.0, 3.0], [2.0, 3.0], + [2.0, 3.0], darea, area, level, @@ -121,6 +122,7 @@ end zeros(1), zeros(1), zeros(1), + zeros(1), [area], [level], [storage], diff --git a/docs/core/usage.qmd b/docs/core/usage.qmd index e3da5d330..f8fec8b9c 100644 --- a/docs/core/usage.qmd +++ b/docs/core/usage.qmd @@ -705,27 +705,36 @@ derivative | Float64 | - | - ## Basin - `basin.arrow` -The basin table contains results of the storage and level of each basin at every solver -timestep. The initial condition is also written to the file. +The basin table contains: + +- results of the storage and level of each basin, which are instantaneous values; +- results of the vertical fluxes on each basin, which are mean values over the `saveat` intervals. In the time column the start of the period is indicated. This means that for the final time in the table the mean vertical fluxes are not computed, and thus are `missing`. + +The initial condition is also written to the file. + +column | type | unit +------------- | ------------------------ | ---- +time | DateTime | - +node_id | Int32 | - +storage | Float64 | $m^3$ +level | Float64 | $m$ +precipitation | Union{Float64, Missing} | $m^3 s^{-1}$ +evaporation | Union{Float64, Missing} | $m^3 s^{-1}$ +drainage | Union{Float64, Missing} | $m^3 s^{-1}$ +infiltration | Union{Float64, Missing} | $m^3 s^{-1}$ -column | type | unit --------- | -------- | ---- -time | DateTime | - -node_id | Int32 | - -storage | Float64 | $m^3$ -level | Float64 | $m$ The table is sorted by time, and per time it is sorted by `node_id`. ## Flow - `flow.arrow` -The flow table contains calculated mean flows for every flow edge in the model. +The flow table contains calculated mean flows over the `saveat` intervals for every flow edge in the model. In the time column the start of the period is indicated. column | type | unit -------------- | --------------------- | ---- time | DateTime | - -edge_id | Union{Int32, Missing} | - +edge_id | Int32 | - from_node_type | String | - from_node_id | Int32 | - to_node_type | String | - @@ -734,8 +743,7 @@ flow_rate | Float64 | $m^3 s^{-1}$ The table is sorted by time, and per time the same `edge_id` order is used, though not sorted. The `edge_id` value is the same as the `fid` written to the Edge table, and can be used to directly look up the Edge geometry. -Flows that are added to the model at a node, have a missing `edge_id`, and identical `from_node_id` and `to_node_id`. -Flows out of the model always have a negative sign, and additions a positive sign. +Flows from the "from" to the "to" node have a positive sign, and if the flow is reversed it will be negative. ## DiscreteControl - `control.arrow` From 116069f692aa0b5a0f81426c7acc0d01a5dfa008 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Thu, 28 Mar 2024 17:34:15 +0100 Subject: [PATCH 020/158] Stop specifying own `FilePath` type (#1335) --- python/ribasim/ribasim/input_base.py | 11 +++++------ python/ribasim/ribasim/model.py | 12 +++++------- python/ribasim/ribasim/types.py | 5 ----- 3 files changed, 10 insertions(+), 18 deletions(-) delete mode 100644 python/ribasim/ribasim/types.py diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index d728b7462..99a5ec1b3 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -33,7 +33,6 @@ ) import ribasim -from ribasim.types import FilePath __all__ = ("TableModel",) @@ -286,7 +285,7 @@ def _write_arrow(self, filepath: Path, directory: Path, input_dir: Path) -> None ) @classmethod - def _from_db(cls, path: FilePath, table: str) -> pd.DataFrame | None: + def _from_db(cls, path: Path, table: str) -> pd.DataFrame | None: with connect(path) as connection: if exists(connection, table): query = f"select * from {esc_id(table)}" @@ -299,7 +298,7 @@ def _from_db(cls, path: FilePath, table: str) -> pd.DataFrame | None: return df @classmethod - def _from_arrow(cls, path: FilePath) -> pd.DataFrame: + def _from_arrow(cls, path: Path) -> pd.DataFrame: directory = context_file_loading.get().get("directory", Path(".")) return pd.read_feather(directory / path) @@ -358,7 +357,7 @@ class SpatialTableModel(TableModel[TableT], Generic[TableT]): df: GeoDataFrame[TableT] | None = Field(default=None, exclude=True, repr=False) @classmethod - def _from_db(cls, path: FilePath, table: str): + def _from_db(cls, path: Path, table: str): with connect(path) as connection: if exists(connection, table): df = gpd.read_file(path, layer=table, fid_as_index=True) @@ -367,13 +366,13 @@ def _from_db(cls, path: FilePath, table: str): return df - def _write_table(self, path: FilePath) -> None: + def _write_table(self, path: Path) -> None: """ Write the contents of the input to a database. Parameters ---------- - path : FilePath + path : Path """ assert self.df is not None self.df.to_file(path, layer=self.tablename(), driver="GPKG", mode="a") diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index f6d208890..ce19d7b24 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -1,5 +1,6 @@ import datetime from collections.abc import Generator +from os import PathLike from pathlib import Path from typing import Any @@ -11,7 +12,6 @@ from pydantic import ( DirectoryPath, Field, - FilePath, field_serializer, model_validator, ) @@ -125,9 +125,7 @@ def __repr__(self) -> str: content.append(")") return "\n".join(content) - def _write_toml(self, fn: FilePath): - fn = Path(fn) - + def _write_toml(self, fn: Path): content = self.model_dump(exclude_unset=True, exclude_none=True, by_alias=True) # Filter empty dicts (default Nodes) content = dict(filter(lambda x: x[1], content.items())) @@ -201,11 +199,11 @@ def validate_model(self): self.validate_model_node_ids() @classmethod - def read(cls, filepath: FilePath) -> "Model": + def read(cls, filepath: str | PathLike[str]) -> "Model": """Read model from TOML file.""" return cls(filepath=filepath) # type: ignore - def write(self, filepath: Path | str) -> Path: + def write(self, filepath: str | PathLike[str]) -> Path: """ Write the contents of the model to disk and save it as a TOML configuration file. @@ -213,7 +211,7 @@ def write(self, filepath: Path | str) -> Path: Parameters ---------- - filepath: FilePath ending in .toml + filepath: str | PathLike[str] A file path with .toml extension """ # TODO # self.validate_model() diff --git a/python/ribasim/ribasim/types.py b/python/ribasim/ribasim/types.py deleted file mode 100644 index 407e07f53..000000000 --- a/python/ribasim/ribasim/types.py +++ /dev/null @@ -1,5 +0,0 @@ -from os import PathLike - -FilePath = str | PathLike[str] - -__all__ = () From ae2fdf9af57735041088d3824ee2c943cdbb6a83 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 28 Mar 2024 17:39:43 +0100 Subject: [PATCH 021/158] Expose proper vertical flux data (#1337) Fixes https://github.com/Deltares/Ribasim/issues/1334. --- core/src/bmi.jl | 4 ++-- core/test/bmi_test.jl | 17 +++++++++++++++++ 2 files changed, 19 insertions(+), 2 deletions(-) diff --git a/core/src/bmi.jl b/core/src/bmi.jl index 7414d3dfe..bb4ee55f1 100644 --- a/core/src/bmi.jl +++ b/core/src/bmi.jl @@ -37,9 +37,9 @@ function BMI.get_value_ptr(model::Model, name::AbstractString) elseif name == "basin.level" get_tmp(model.integrator.p.basin.current_level, 0) elseif name == "basin.infiltration" - get_tmp(model.integrator.p.basin.vertical_flux, 0).infiltration + model.integrator.p.basin.vertical_flux_from_input.infiltration elseif name == "basin.drainage" - get_tmp(model.integrator.p.basin.vertical_flux, 0).drainage + model.integrator.p.basin.vertical_flux_from_input.drainage elseif name == "basin.infiltration_integrated" model.integrator.p.basin.vertical_flux_bmi.infiltration elseif name == "basin.drainage_integrated" diff --git a/core/test/bmi_test.jl b/core/test/bmi_test.jl index 7b37b2017..8db5258fd 100644 --- a/core/test/bmi_test.jl +++ b/core/test/bmi_test.jl @@ -93,3 +93,20 @@ end BMI.update_until(model, 0.6day) @test all(isapprox.(realized, demand * 0.6day; rtol = 1e-3)) end + +@testitem "vertical basin flux" begin + import BasicModelInterface as BMI + + toml_path = normpath(@__DIR__, "../../generated_testmodels/basic/ribasim.toml") + @test ispath(toml_path) + model = BMI.initialize(Ribasim.Model, toml_path) + drainage = BMI.get_value_ptr(model, "basin.drainage") + drainage_flux = [1.0, 2.0, 3.0, 4.0] + drainage .= drainage_flux + + Δt = 5 * 86400.0 + BMI.update_until(model, Δt) + + drainage_integrated = BMI.get_value_ptr(model, "basin.drainage_integrated") + @test drainage_integrated ≈ Δt * drainage_flux +end From 261643f9c89166a07e270a88f3936de578bdd595 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Thu, 28 Mar 2024 18:03:55 +0100 Subject: [PATCH 022/158] Cleanup model.py (#1336) Co-authored-by: Martijn Visser --- python/ribasim/ribasim/model.py | 32 ++++++++++++++++++++++++++------ 1 file changed, 26 insertions(+), 6 deletions(-) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index ce19d7b24..523eb9316 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -58,8 +58,8 @@ class Model(FileModel): starttime: datetime.datetime endtime: datetime.datetime - input_dir: Path = Field(default_factory=lambda: Path(".")) - results_dir: Path = Field(default_factory=lambda: Path("results")) + input_dir: Path = Field(default=Path(".")) + results_dir: Path = Field(default=Path("results")) logging: Logging = Field(default_factory=Logging) solver: Solver = Field(default_factory=Solver) @@ -102,7 +102,10 @@ def serialize_path(self, path: Path) -> str: return str(path) def model_post_init(self, __context: Any) -> None: - # Always write dir fields + # When serializing we exclude fields that are set to their default values + # However, we always want to write `input_dir` and `results_dir` + # By overriding `BaseModel.model_post_init` we can set them explicitly, + # and enforce that they are always written. self.model_fields_set.update({"input_dir", "results_dir"}) def __repr__(self) -> str: @@ -125,7 +128,20 @@ def __repr__(self) -> str: content.append(")") return "\n".join(content) - def _write_toml(self, fn: Path): + def _write_toml(self, fn: Path) -> Path: + """ + Write the model data to a TOML file. + + Parameters + ---------- + fn : FilePath + The file path where the TOML file will be written. + + Returns + ------- + Path + The file path of the written TOML file. + """ content = self.model_dump(exclude_unset=True, exclude_none=True, by_alias=True) # Filter empty dicts (default Nodes) content = dict(filter(lambda x: x[1], content.items())) @@ -169,7 +185,7 @@ def _nodes(self) -> Generator[MultiNodeModel, Any, None]: if ( isinstance(attr, MultiNodeModel) and attr.node.df is not None - # Model.read creates empty node tables (#1278) + # TODO: Model.read creates empty node tables (#1278) and not attr.node.df.empty ): yield attr @@ -348,7 +364,11 @@ def plot(self, ax=None, indicate_subnetworks: bool = True) -> Any: return ax def to_xugrid(self): - """Convert the network to a xugrid.UgridDataset.""" + """ + Convert the network to a `xugrid.UgridDataset`. + This method will throw `ImportError`, + if the optional dependency `xugrid` isn't installed. + """ node_df = self.node_table().df # This will need to be adopted for locally unique node IDs, From ab7aa518ca390eafff51491eb5172128b5d626ea Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Thu, 28 Mar 2024 18:04:12 +0100 Subject: [PATCH 023/158] Add example for running from Python (#1338) --- build/tests/test_models.py | 7 +------ docs/python/examples.ipynb | 22 ++++++++++++++++++---- 2 files changed, 19 insertions(+), 10 deletions(-) diff --git a/build/tests/test_models.py b/build/tests/test_models.py index f4d23bb41..61a1aa804 100644 --- a/build/tests/test_models.py +++ b/build/tests/test_models.py @@ -1,4 +1,3 @@ -import platform import subprocess from pathlib import Path @@ -16,11 +15,7 @@ def test_ribasim_cli(model_constructor, tmp_path): assert isinstance(model, ribasim.Model) model.write(tmp_path / "ribasim.toml") - extension = ".exe" if platform.system() == "Windows" else "" - - executable = ( - Path(__file__).parents[1] / "ribasim_cli" / "bin" / f"ribasim{extension}" - ) + executable = Path(__file__).parents[1] / "ribasim_cli" / "bin" / "ribasim" result = subprocess.run([executable, tmp_path / "ribasim.toml"]) if model_constructor.__name__.startswith("invalid_"): diff --git a/docs/python/examples.ipynb b/docs/python/examples.ipynb index d2583c8db..4908afb22 100644 --- a/docs/python/examples.ipynb +++ b/docs/python/examples.ipynb @@ -361,7 +361,8 @@ "metadata": {}, "outputs": [], "source": [ - "model.write(datadir / \"basic/ribasim.toml\")" + "toml_path = datadir / \"basic/ribasim.toml\"\n", + "model.write(toml_path)" ] }, { @@ -378,7 +379,7 @@ " \"julia\",\n", " \"--project=../../core\",\n", " \"--eval\",\n", - " f'using Ribasim; Ribasim.main(\"{datadir.as_posix()}/basic/ribasim.toml\")',\n", + " f'using Ribasim; Ribasim.main(\"{toml_path.as_posix()}\")',\n", " ],\n", " check=True,\n", ")" @@ -389,8 +390,21 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Now run the model with `ribasim basic/ribasim.toml`.\n", - "After running the model, read back the results:\n" + "Now run the model. From Python you can run it with:\n", + "\n", + "```python\n", + "import subprocess\n", + "subprocess.call([cli_path, toml_path], check=True)\n", + "```\n", + "\n", + "Windows users should note that if you put the `ribasim_cli` folder in your Path, `cli_path` needs to have the cmd suffix; `ribasim.cmd`.\n", + "\n", + "Or similarly you can from the terminal with:\n", + "```bash\n", + "ribasim basic/ribasim.toml\n", + "```\n", + "\n", + "After running the model, read back the results:" ] }, { From 5974e08c0b2c97e4aa79db741b7bfc5795e5027d Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Tue, 2 Apr 2024 13:39:22 +0200 Subject: [PATCH 024/158] Split collecting subnetwork demand into internal sources and main network phases (#1235) Fixes https://github.com/Deltares/Ribasim/issues/1207. --------- Co-authored-by: Martijn Visser --- core/src/allocation_init.jl | 6 +- core/src/allocation_optim.jl | 477 ++++++++++++------ core/src/callback.jl | 5 +- core/src/parameter.jl | 17 +- core/src/read.jl | 4 +- core/src/solve.jl | 73 +-- core/src/util.jl | 34 +- core/src/write.jl | 4 +- core/test/allocation_test.jl | 120 ++++- core/test/run_models_test.jl | 4 +- core/test/validation_test.jl | 1 + docs/core/allocation.qmd | 28 +- .../ribasim_testmodels/__init__.py | 2 + .../ribasim_testmodels/allocation.py | 20 + 14 files changed, 564 insertions(+), 231 deletions(-) diff --git a/core/src/allocation_init.jl b/core/src/allocation_init.jl index 6fd3ddbd5..f32a6855d 100644 --- a/core/src/allocation_init.jl +++ b/core/src/allocation_init.jl @@ -366,8 +366,7 @@ function add_variables_basin!( (; graph) = p node_ids_basin = [ node_id for node_id in graph[].node_ids[allocation_network_id] if - graph[node_id].type == :basin && - has_external_demand(graph, node_id, :level_demand)[1] + graph[node_id].type == :basin ] problem[:F_basin_in] = JuMP.@variable(problem, F_basin_in[node_id = node_ids_basin,] >= 0.0) @@ -425,8 +424,7 @@ function add_variables_absolute_value!( type = node_id.type if type == NodeType.UserDemand push!(node_ids_user_demand, node_id) - elseif type == NodeType.Basin && - has_external_demand(graph, node_id, :level_demand)[1] + elseif type == NodeType.Basin push!(node_ids_level_demand, node_id) elseif has_external_demand(graph, node_id, :flow_demand)[1] push!(node_ids_flow_demand, node_id) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 6f3606d4b..2d6cf45b1 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -1,3 +1,5 @@ +@enumx OptimizationType internal_sources collect_demands allocate + """ Add a term to the objective function given by the objective type, depending in the provided flow variable and the associated demand. @@ -75,8 +77,8 @@ function set_objective_priority!( priority_idx::Int, )::Nothing (; problem, allocation_network_id) = allocation_model - (; graph, allocation, user_demand, flow_demand, basin) = p - (; demand_itp, demand_from_timeseries, node_id) = user_demand + (; graph, user_demand, flow_demand, allocation, basin) = p + (; node_id) = user_demand (; main_network_connections, subnetwork_demands) = allocation edge_ids = graph[].edge_ids[allocation_network_id] @@ -112,13 +114,7 @@ function set_objective_priority!( if to_node_id.type == NodeType.UserDemand # UserDemand - user_demand_idx = findsorted(node_id, to_node_id) - if demand_from_timeseries[user_demand_idx] - d = demand_itp[user_demand_idx][priority_idx](t) - set_user_demand!(p, to_node_id, priority_idx, d) - else - d = get_user_demand(p, to_node_id, priority_idx) - end + d = get_user_demand(p, to_node_id, priority_idx) add_user_demand_term!(edge_id, d, problem) else has_demand, demand_node_id = @@ -159,8 +155,8 @@ Assign the allocations to the UserDemand as determined by the solution of the al function assign_allocations!( allocation_model::AllocationModel, p::Parameters, - priority_idx::Int; - collect_demands::Bool = false, + priority_idx::Int, + optimization_type::OptimizationType.T, )::Nothing (; problem, allocation_network_id) = allocation_model (; graph, user_demand, allocation) = p @@ -176,19 +172,19 @@ function assign_allocations!( for edge_id in edge_ids # If this edge is a source edge from the main network to a subnetwork, # and demands are being collected, add its flow to the demand of this edge - if collect_demands && - graph[edge_id...].allocation_network_id_source == allocation_network_id && - edge_id ∈ main_network_source_edges - allocated = JuMP.value(F[edge_id]) - subnetwork_demands[edge_id][priority_idx] += allocated - end - - user_demand_node_id = edge_id[2] - - if user_demand_node_id.type == NodeType.UserDemand - allocated = JuMP.value(F[edge_id]) - user_demand_idx = findsorted(user_demand.node_id, user_demand_node_id) - user_demand.allocated[user_demand_idx][priority_idx] = allocated + if optimization_type == OptimizationType.collect_demands + if graph[edge_id...].allocation_network_id_source == allocation_network_id && + edge_id ∈ main_network_source_edges + allocated = JuMP.value(F[edge_id]) + subnetwork_demands[edge_id][priority_idx] += allocated + end + elseif optimization_type == OptimizationType.allocate + user_demand_node_id = edge_id[2] + if user_demand_node_id.type == NodeType.UserDemand + allocated = JuMP.value(F[edge_id]) + user_demand_idx = findsorted(user_demand.node_id, user_demand_node_id) + user_demand.allocated[user_demand_idx][priority_idx] = allocated + end end end @@ -209,53 +205,67 @@ function assign_allocations!( end """ -Adjust the source flows. +Set the capacities of the main network to subnetwork inlets. +Per optimization type: +internal_sources: 0.0 +collect_demands: Inf +allocate: the total flow allocated to this inlet from the main network """ -function adjust_capacities_source!( +function set_initial_capacities_inlet!( allocation_model::AllocationModel, p::Parameters, - priority_idx::Int; - collect_demands::Bool = false, + optimization_type::OptimizationType.T, )::Nothing (; problem) = allocation_model - (; graph, allocation) = p + (; allocation) = p (; allocation_network_id) = allocation_model (; subnetwork_allocateds) = allocation - edge_ids = graph[].edge_ids[allocation_network_id] source_constraints = problem[:source] - F = problem[:F] main_network_source_edges = get_main_network_connections(p, allocation_network_id) + for edge_id in main_network_source_edges + source_capacity = if optimization_type == OptimizationType.internal_sources + # Set the source capacity to 0 if optimization is being done for the internal subnetwork sources + 0.0 + elseif optimization_type == OptimizationType.collect_demands + # Set the source capacity to effectively unlimited if subnetwork demands are being collected + Inf + elseif optimization_type == OptimizationType.allocate + # Set the source capacity to the sum over priorities of the values allocated to the subnetwork over this edge + sum(subnetwork_allocateds[edge_id]) + end + JuMP.set_normalized_rhs(source_constraints[edge_id], source_capacity) + end + return nothing +end + +""" +Set the capacities of the sources in the subnetwork +as the latest instantaneous flow out of the source in the physical layer +""" +function set_initial_capacities_source!( + allocation_model::AllocationModel, + p::Parameters, +)::Nothing + (; problem) = allocation_model + (; graph) = p + (; allocation_network_id) = allocation_model + edge_ids = graph[].edge_ids[allocation_network_id] + source_constraints = problem[:source] + main_network_source_edges = get_main_network_connections(p, allocation_network_id) + for edge_id in edge_ids if graph[edge_id...].allocation_network_id_source == allocation_network_id # If it is a source edge for this allocation problem - if priority_idx == 1 - # If the optimization was just started, i.e. sources have to be reset - if edge_id in main_network_source_edges - if collect_demands - # Set the source capacity to effectively unlimited if subnetwork demands are being collected - source_capacity = Inf - else - # Set the source capacity to the value allocated to the subnetwork over this edge - source_capacity = subnetwork_allocateds[edge_id][priority_idx] - end - else - # Reset the source to the current flow from the physical layer. - source_capacity = get_flow(graph, edge_id..., 0) - end + if edge_id ∉ main_network_source_edges + # Reset the source to the current flow from the physical layer. + source_capacity = get_flow(graph, edge_id..., 0) JuMP.set_normalized_rhs( source_constraints[edge_id], # It is assumed that the allocation procedure does not have to be differentiated. source_capacity, ) - else - # Subtract the allocated flow from the source. - JuMP.set_normalized_rhs( - source_constraints[edge_id], - JuMP.normalized_rhs(source_constraints[edge_id]) - - JuMP.value(F[edge_id]), - ) end end end @@ -263,22 +273,35 @@ function adjust_capacities_source!( end """ -Set the values of the edge capacities. 2 cases: -- Before the first allocation solve, set the edge capacities to their full capacity; -- Before an allocation solve, subtract the flow used by allocation for the previous priority - from the edge capacities. +Adjust the source capacities by the flow used from the sources. """ -function adjust_capacities_edge!( +function adjust_capacities_source!(allocation_model::AllocationModel)::Nothing + (; problem) = allocation_model + source_constraints = problem[:source] + F = problem[:F] + + for edge_id in only(source_constraints.axes) + # Subtract the allocated flow from the source + JuMP.set_normalized_rhs( + source_constraints[edge_id], + JuMP.normalized_rhs(source_constraints[edge_id]) - JuMP.value(F[edge_id]), + ) + end + return nothing +end + +""" +Set the capacities of the allocation flow edges as determined by +the smallest max_flow_rate of a node on this edge +""" +function set_initial_capacities_edge!( allocation_model::AllocationModel, p::Parameters, - priority_idx::Int, )::Nothing (; graph) = p (; problem, capacity, allocation_network_id) = allocation_model edge_ids = graph[].edge_ids[allocation_network_id] constraints_capacity = problem[:capacity] - F = problem[:F] - main_network_source_edges = get_main_network_connections(p, allocation_network_id) for edge_id in edge_ids @@ -290,18 +313,30 @@ function adjust_capacities_edge!( if isinf(c) || edge_id ∈ main_network_source_edges continue end + JuMP.set_normalized_rhs(constraints_capacity[edge_id], c) + end - if priority_idx == 1 - # Before the first allocation solve, set the edge capacities to their full capacity - JuMP.set_normalized_rhs(constraints_capacity[edge_id], c) - else - # Before an allocation solve, subtract the flow used by allocation for the previous priority - # from the edge capacities - JuMP.set_normalized_rhs( - constraints_capacity[edge_id], - JuMP.normalized_rhs(constraints_capacity[edge_id]) - JuMP.value(F[edge_id]), - ) - end + return nothing +end + +""" +Set the values of the edge capacities. 2 cases: +- Before the first allocation solve, set the edge capacities to their full capacity; +- Before an allocation solve, subtract the flow used by allocation for the previous priority + from the edge capacities. +""" +function adjust_capacities_edge!(allocation_model::AllocationModel)::Nothing + (; problem) = allocation_model + constraints_capacity = problem[:capacity] + F = problem[:F] + + for edge_id in only(constraints_capacity.axes) + # Before an allocation solve, subtract the flow used by allocation for the previous priority + # from the edge capacities + JuMP.set_normalized_rhs( + constraints_capacity[edge_id], + JuMP.normalized_rhs(constraints_capacity[edge_id]) - JuMP.value(F[edge_id]), + ) end end @@ -394,34 +429,95 @@ function get_basin_demand( end """ -Set the capacities of the basin outflows. 2 cases: -- Before the first allocation solve, set the capacities to their full capacity if there is surplus storage; -- Before an allocation solve, subtract the flow used by allocation for the previous priority - from the capacities. +Set the initial capacity of each basin in the subnetwork as +vertical fluxes + the disk of storage above the maximum level / Δt_allocation """ -function adjust_capacities_basin!( +function set_initial_capacities_basin!( allocation_model::AllocationModel, - u::ComponentVector, p::Parameters, + u::ComponentVector, t::Float64, - priority_idx::Int, )::Nothing (; problem) = allocation_model constraints_outflow = problem[:basin_outflow] + + for node_id in only(constraints_outflow.axes) + constraint = constraints_outflow[node_id] + JuMP.set_normalized_rhs( + constraint, + get_basin_capacity(allocation_model, u, p, t, node_id), + ) + end + return nothing +end + +""" +Set the values of the basin outflows. 2 cases: +- Before the first allocation solve, set the capacities to their full capacity if there is surplus storage; +- Before an allocation solve, subtract the flow used by allocation for the previous priority + from the capacities. +""" +function adjust_capacities_basin!(allocation_model::AllocationModel)::Nothing + (; problem) = allocation_model + constraints_outflow = problem[:basin_outflow] F_basin_out = problem[:F_basin_out] for node_id in only(constraints_outflow.axes) constraint = constraints_outflow[node_id] - if priority_idx == 1 - JuMP.set_normalized_rhs( - constraint, - get_basin_capacity(allocation_model, u, p, t, node_id), - ) - else - JuMP.set_normalized_rhs( - constraint, - JuMP.normalized_rhs(constraint) - JuMP.value(F_basin_out[node_id]), - ) + JuMP.set_normalized_rhs( + constraint, + JuMP.normalized_rhs(constraint) - JuMP.value(F_basin_out[node_id]), + ) + end + + return nothing +end + +""" +Set the demands of the user demand nodes as given +by either a coupled model or a timeseries +""" +function set_initial_demands_user!( + allocation_model::AllocationModel, + p::Parameters, + t::Float64, +)::Nothing + (; allocation_network_id) = allocation_model + (; graph, user_demand, allocation) = p + (; node_id, demand_from_timeseries, demand_itp) = user_demand + + # Read the demand from the interpolated timeseries + # for users for which the demand comes from there + for (i, id) in enumerate(node_id) + if demand_from_timeseries[i] && + graph[id].allocation_network_id == allocation_network_id + for priority_idx in eachindex(allocation.priorities) + d = demand_itp[i][priority_idx](t) + set_user_demand!(p, id, priority_idx, d; reduced = false) + end + end + end + copy!(user_demand.demand_reduced, user_demand.demand) + return nothing +end + +""" +Set the initial demand of each basin in the subnetwork as +- vertical fluxes + the disk of missing storage below the minimum level / Δt_allocation +""" +function set_initial_demands_level!( + allocation_model::AllocationModel, + u::ComponentVector, + p::Parameters, + t::Float64, +)::Nothing + (; allocation_network_id) = allocation_model + (; graph, basin) = p + (; node_id, demand) = basin + + for (i, id) in enumerate(node_id) + if graph[id].allocation_network_id == allocation_network_id + demand[i] = get_basin_demand(allocation_model, u, p, t, id) end end @@ -476,48 +572,116 @@ Set the demand of the flow demand nodes. 2 cases: - Before an allocation solve, subtract the flow trough the node with a flow demand from the total flow demand (which will be used at the priority of the flow demand only). """ -function adjust_demands_flow!( +function adjust_demands_user!( allocation_model::AllocationModel, p::Parameters, - t::Float64, priority_idx::Int, )::Nothing - (; flow_demand, graph) = p (; problem, allocation_network_id) = allocation_model + (; graph, user_demand) = p F = problem[:F] + # Reduce the demand by what was allocated + for id in user_demand.node_id + if graph[id].allocation_network_id == allocation_network_id + d = max( + 0.0, + get_user_demand(p, id, priority_idx) - + JuMP.value(F[(inflow_id(graph, id), id)]), + ) + set_user_demand!(p, id, priority_idx, d) + end + end + return nothing +end + +""" +Subtract the allocated flow to the basin from its demand, +to obtain the reduced demand used for goal programming +""" +function adjust_demands_level!(allocation_model::AllocationModel, p::Parameters)::Nothing + (; graph, basin) = p + (; node_id, demand) = basin + (; allocation_network_id, problem) = allocation_model + F_basin_in = problem[:F_basin_in] + + # Reduce the demand by what was allocated + for (i, id) in enumerate(node_id) + if graph[id].allocation_network_id == allocation_network_id + demand[i] -= JuMP.value(F_basin_in[id]) + end + end + + return nothing +end + +""" +Set the initial demands of the nodes with a flow demand to the +interpolated value from the given timeseries. +""" +function set_initial_demands_flow!( + allocation_model::AllocationModel, + p::Parameters, + t::Float64, +)::Nothing + (; flow_demand, graph) = p + (; allocation_network_id) = allocation_model + for (i, node_id) in enumerate(flow_demand.node_id) if graph[node_id].allocation_network_id != allocation_network_id continue end + flow_demand.demand[i] = flow_demand.demand_itp[i](t) + end + return nothing +end - if priority_idx == 1 - flow_demand.demand[i] = flow_demand.demand_itp[i](t) - else - node_with_demand_id = - only(outneighbor_labels_type(graph, node_id, EdgeType.control)) +""" +Reduce the flow demand based on flow trough the node with the demand. +Flow from any priority counts. +""" +function adjust_demands_flow!(allocation_model::AllocationModel, p::Parameters)::Nothing + (; flow_demand, graph) = p + (; problem, allocation_network_id) = allocation_model + F = problem[:F] - flow_demand.demand[i] = max( - 0.0, - flow_demand.demand[i] - JuMP.value( - F[(inflow_id(graph, node_with_demand_id), node_with_demand_id)], - ), - ) + for (i, node_id) in enumerate(flow_demand.node_id) + if graph[node_id].allocation_network_id != allocation_network_id + continue end + + node_with_demand_id = + only(outneighbor_labels_type(graph, node_id, EdgeType.control)) + + flow_demand.demand[i] = max( + 0.0, + flow_demand.demand[i] - + JuMP.value(F[(inflow_id(graph, node_with_demand_id), node_with_demand_id)]), + ) end return nothing end """ -Adjust the capacities of the flow buffers of nodes with a flow demand. 2 cases: -- Before the first allocation solve, set the capacities to 0.0; -- Before an allocation solve, add the flow into the buffer and remove the flow out - of the buffer from the buffer capacity. +Set the flow buffer of nodes with a flow demand to 0.0 """ -function adjust_capacities_buffers!( - allocation_model::AllocationModel, - priority_idx::Int, -)::Nothing +function set_initial_capacities_buffer!(allocation_model::AllocationModel)::Nothing + (; problem) = allocation_model + constraints_flow_buffer = problem[:flow_buffer_outflow] + + for node_id in only(constraints_flow_buffer.axes) + constraint = constraints_flow_buffer[node_id] + buffer_capacity = 0.0 + JuMP.set_normalized_rhs(constraint, buffer_capacity) + end + return nothing +end + +""" +Increase the capacities of the flow buffers of nodes with a flow demand +by the inflow to the respective buffers. +""" +function adjust_capacities_buffer!(allocation_model::AllocationModel)::Nothing (; problem) = allocation_model constraints_flow_buffer = problem[:flow_buffer_outflow] @@ -527,17 +691,11 @@ function adjust_capacities_buffers!( for node_id in only(constraints_flow_buffer.axes) constraint = constraints_flow_buffer[node_id] - - buffer_capacity = if priority_idx == 1 - 0.0 - else - max( - 0.0, - JuMP.normalized_rhs(constraint) + JuMP.value(F_flow_buffer_in[node_id]) - - JuMP.value(F_flow_buffer_out[node_id]), - ) - end - + buffer_capacity = max( + 0.0, + JuMP.normalized_rhs(constraint) + JuMP.value(F_flow_buffer_in[node_id]) - + JuMP.value(F_flow_buffer_out[node_id]), + ) JuMP.set_normalized_rhs(constraint, buffer_capacity) end return nothing @@ -548,7 +706,7 @@ Set the capacity of the outflow edge from a node with a flow demand: - To Inf if the current priority is other than the priority of the flow demand - To 0.0 if the current priority is equal to the priority of the flow demand """ -function adjust_capacities_flow_demand_outflow!( +function set_capacities_flow_demand_outflow!( allocation_model::AllocationModel, p::Parameters, priority_idx::Int, @@ -672,7 +830,7 @@ function save_allocation_flows!( t::Float64, allocation_model::AllocationModel, priority::Int32, - collect_demands::Bool, + optimization_type::OptimizationType.T, )::Nothing (; problem, allocation_network_id) = allocation_model (; allocation, graph) = p @@ -697,7 +855,7 @@ function save_allocation_flows!( push!(record_flow.subnetwork_id, allocation_network_id) push!(record_flow.priority, priority) push!(record_flow.flow_rate, flow_rate) - push!(record_flow.collect_demands, collect_demands) + push!(record_flow.optimization_type, string(optimization_type)) end end @@ -715,7 +873,7 @@ function save_allocation_flows!( push!(record_flow.subnetwork_id, allocation_network_id) push!(record_flow.priority, priority) push!(record_flow.flow_rate, flow_rate) - push!(record_flow.collect_demands, collect_demands) + push!(record_flow.optimization_type, string(optimization_type)) end end @@ -727,18 +885,14 @@ function allocate_priority!( u::ComponentVector, p::Parameters, t::Float64, - priority_idx::Int; - collect_demands::Bool = false, + priority_idx::Int, + optimization_type::OptimizationType.T, )::Nothing (; problem) = allocation_model (; allocation) = p (; priorities) = allocation - adjust_capacities_source!(allocation_model, p, priority_idx; collect_demands) - adjust_capacities_edge!(allocation_model, p, priority_idx) - adjust_capacities_basin!(allocation_model, u, p, t, priority_idx) - adjust_capacities_buffers!(allocation_model, priority_idx) - adjust_demands_flow!(allocation_model, p, t, priority_idx) + set_capacities_flow_demand_outflow!(allocation_model, p, priority_idx) # Set the objective depending on the demands # A new objective function is set instead of modifying the coefficients @@ -747,8 +901,6 @@ function allocate_priority!( # https://jump.dev/JuMP.jl/v1.16/manual/objective/#Modify-an-objective-coefficient set_objective_priority!(allocation_model, p, u, t, priority_idx) - adjust_capacities_flow_demand_outflow!(allocation_model, p, priority_idx) - # Solve the allocation problem for this priority JuMP.optimize!(problem) @debug JuMP.solution_summary(problem) @@ -761,7 +913,7 @@ function allocate_priority!( end # Assign the allocations to the UserDemand for this priority - assign_allocations!(allocation_model, p, priority_idx; collect_demands) + assign_allocations!(allocation_model, p, priority_idx, optimization_type) # Save the demands and allocated flows for all nodes that have these save_demands_and_allocations!(p, allocation_model, t, priority_idx) @@ -772,10 +924,42 @@ function allocate_priority!( t, allocation_model, priorities[priority_idx], - collect_demands, + optimization_type, ) + # Adjust capacities for the optimization for the next priority + adjust_capacities_source!(allocation_model) + adjust_capacities_edge!(allocation_model) + adjust_capacities_basin!(allocation_model) + adjust_capacities_buffer!(allocation_model) adjust_capacities_returnflow!(allocation_model, p) + + # Adjust demands for next optimization (in case of internal_sources -> collect_demands) + adjust_demands_user!(allocation_model, p, priority_idx) + adjust_demands_level!(allocation_model, p) + adjust_demands_flow!(allocation_model, p) + return nothing +end + +""" +Set the initial capacities and demands which are recudes by usage in the +adjust_capacities_*! and adjust_demands_*! functions respectively. +""" +function set_initial_values!( + allocation_model::AllocationModel, + p::Parameters, + u::ComponentVector, + t::Float64, +)::Nothing + set_initial_capacities_source!(allocation_model, p) + set_initial_capacities_edge!(allocation_model, p) + set_initial_capacities_basin!(allocation_model, p, u, t) + set_initial_capacities_buffer!(allocation_model) + set_initial_capacities_returnflow!(allocation_model) + + set_initial_demands_user!(allocation_model, p, t) + set_initial_demands_level!(allocation_model, u, p, t) + set_initial_demands_flow!(allocation_model, p, t) return nothing end @@ -787,16 +971,20 @@ function allocate!( p::Parameters, allocation_model::AllocationModel, t::Float64, - u::ComponentVector; - collect_demands::Bool = false, + u::ComponentVector, + optimization_type::OptimizationType.T, )::Nothing (; allocation) = p (; allocation_network_id) = allocation_model (; priorities, subnetwork_demands) = allocation - main_network_source_edges = get_main_network_connections(p, allocation_network_id) - if collect_demands + if allocation_network_id == 1 + @assert optimization_type == OptimizationType.allocate "For the main network no demands have to be collected" + end + + # Reset the subnetwork demands to 0.0 + if optimization_type == OptimizationType.collect_demands for main_network_connection in keys(subnetwork_demands) if main_network_connection in main_network_source_edges subnetwork_demands[main_network_connection] .= 0.0 @@ -804,9 +992,14 @@ function allocate!( end end - set_initial_capacities_returnflow!(allocation_model) + set_initial_capacities_inlet!(allocation_model, p, optimization_type) + + if optimization_type != OptimizationType.collect_demands + set_initial_values!(allocation_model, p, u, t) + end + # Loop over the priorities for priority_idx in eachindex(priorities) - allocate_priority!(allocation_model, u, p, t, priority_idx; collect_demands) + allocate_priority!(allocation_model, u, p, t, priority_idx, optimization_type) end end diff --git a/core/src/callback.jl b/core/src/callback.jl index 8aa34f519..77fd2e896 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -508,7 +508,8 @@ function update_allocation!(integrator)::Nothing # If a main network is present, collect demands of subnetworks if has_main_network(allocation) for allocation_model in Iterators.drop(allocation_models, 1) - allocate!(p, allocation_model, t, u; collect_demands = true) + allocate!(p, allocation_model, t, u, OptimizationType.internal_sources) + allocate!(p, allocation_model, t, u, OptimizationType.collect_demands) end end @@ -516,7 +517,7 @@ function update_allocation!(integrator)::Nothing # If a main network is present this is solved first, # which provides allocation to the subnetworks for allocation_model in allocation_models - allocate!(p, allocation_model, t, u) + allocate!(p, allocation_model, t, u, OptimizationType.allocate) end end diff --git a/core/src/parameter.jl b/core/src/parameter.jl index 214d056a4..c5a8995e8 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -94,7 +94,7 @@ struct Allocation subnetwork_id::Vector{Int32}, priority::Vector{Int32}, flow_rate::Vector{Float64}, - collect_demands::BitVector, + optimization_type::Vector{String}, } end @@ -166,7 +166,7 @@ struct Basin{T, C, V1, V2, V3} <: AbstractParameterNode area::Vector{Vector{Float64}} level::Vector{Vector{Float64}} storage::Vector{Vector{Float64}} - # Demands and allocated flows for allocation if applicable + # Demands for allocation if applicable demand::Vector{Float64} # Data source for parameter updates time::StructVector{BasinTimeV1, C, Int} @@ -479,11 +479,15 @@ struct PidControl{T} <: AbstractParameterNode end """ -demand: water flux demand of UserDemand per priority over time. +active: whether this node is active and thus demands water +realized_bmi: Cumulative inflow volume, for read or reset by BMI only +demand: water flux demand of UserDemand per priority over time Each UserDemand has a demand for all priorities, which is 0.0 if it is not provided explicitly. -realized_bmi: Cumulative inflow volume, for read or reset by BMI only. -active: whether this node is active and thus demands water +demand_reduced: the total demand reduced by allocated flows. This is used for goal programming, + and requires separate memory from `demand` since demands can come from the BMI +demand_itp: Timeseries interpolation objects for demands +demand_from_timeseries: If false the demand comes from the BMI or is fixed allocated: water flux currently allocated to UserDemand per priority return_factor: the factor in [0,1] of how much of the abstracted water is given back to the system min_level: The level of the source basin below which the UserDemand does not abstract @@ -493,6 +497,7 @@ struct UserDemand <: AbstractParameterNode active::BitVector realized_bmi::Vector{Float64} demand::Vector{Float64} + demand_reduced::Vector{Float64} demand_itp::Vector{Vector{ScalarInterpolation}} demand_from_timeseries::BitVector allocated::Vector{Vector{Float64}} @@ -504,6 +509,7 @@ struct UserDemand <: AbstractParameterNode active, realized_bmi, demand, + demand_reduced, demand_itp, demand_from_timeseries, allocated, @@ -517,6 +523,7 @@ struct UserDemand <: AbstractParameterNode active, realized_bmi, demand, + demand_reduced, demand_itp, demand_from_timeseries, allocated, diff --git a/core/src/read.jl b/core/src/read.jl index 0ae86147d..dcda5a69b 100644 --- a/core/src/read.jl +++ b/core/src/read.jl @@ -742,6 +742,7 @@ function UserDemand(db::DB, config::Config)::UserDemand active = BitVector(ones(Bool, n_user)) realized_bmi = zeros(n_user) demand = zeros(n_user * n_priority) + demand_reduced = zeros(n_user * n_priority) trivial_timespan = [nextfloat(-Inf), prevfloat(Inf)] demand_itp = [ [LinearInterpolation(zeros(2), trivial_timespan) for i in eachindex(priorities)] for j in eachindex(node_ids) @@ -786,6 +787,7 @@ function UserDemand(db::DB, config::Config)::UserDemand active, realized_bmi, demand, + demand_reduced, demand_itp, demand_from_timeseries, allocated, @@ -902,7 +904,7 @@ function Allocation(db::DB, config::Config)::Allocation subnetwork_id = Int32[], priority = Int32[], flow_rate = Float64[], - collect_demands = BitVector(), + optimization_type = String[], ) allocation = Allocation( diff --git a/core/src/solve.jl b/core/src/solve.jl index f581fc591..214e4660e 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -123,8 +123,6 @@ function continuous_control!( current_area = get_tmp(current_area, u) storage = u.storage - outlet_flow_rate = get_tmp(outlet.flow_rate, u) - pump_flow_rate = get_tmp(pump.flow_rate, u) error = get_tmp(error, u) set_error!(pid_control, p, u, t) @@ -143,8 +141,10 @@ function continuous_control!( controlled_node_id = only(outneighbor_labels_type(graph, id, EdgeType.control)) controls_pump = (controlled_node_id in pump.node_id) + controlled_node_idx = + controls_pump ? findsorted(pump.node_id, controlled_node_id) : + findsorted(outlet.node_id, controlled_node_id) - # No flow of outlet if source level is lower than target level if !controls_pump src_id = inflow_id(graph, controlled_node_id) dst_id = outflow_id(graph, controlled_node_id) @@ -152,28 +152,27 @@ function continuous_control!( src_level = get_level(p, src_id, t; storage) dst_level = get_level(p, dst_id, t; storage) - if src_level === nothing || dst_level === nothing - factor_outlet = 1.0 - else + factor_outlet = 1.0 + + # No flow of outlet if source level is lower than target level + if !(src_level === nothing || dst_level === nothing) Δlevel = src_level - dst_level - factor_outlet = reduction_factor(Δlevel, 0.1) + factor_outlet *= reduction_factor(Δlevel, 0.1) + end + + # No flow out outlet if source level is lower than minimum crest level + if src_level !== nothing + factor_outlet *= reduction_factor( + src_level - outlet.min_crest_level[controlled_node_idx], + 0.1, + ) end else factor_outlet = 1.0 end - if controls_pump - controlled_node_idx = findsorted(pump.node_id, controlled_node_id) - factor_basin = - low_storage_factor(storage, basin.node_id, listened_node_id, 10.0) - else - controlled_node_idx = findsorted(outlet.node_id, controlled_node_id) - - # Upstream node of outlet does not have to be a basin - upstream_node_id = inflow_id(graph, controlled_node_id) - factor_basin = - low_storage_factor(storage, basin.node_id, upstream_node_id, 10.0) - end + id_inflow = inflow_id(graph, controlled_node_id) + factor_basin = low_storage_factor(storage, basin.node_id, id_inflow, 10.0) factor = factor_basin * factor_outlet flow_rate = 0.0 @@ -220,17 +219,6 @@ function continuous_control!( max_flow_rate[controlled_node_idx], ) - # Below du.storage is updated. This is normally only done - # in formulate!(du, connectivity, basin), but in this function - # flows are set so du has to be updated too. - if controls_pump - pump_flow_rate[controlled_node_idx] = flow_rate - du.storage[listened_node_idx] -= flow_rate - else - outlet_flow_rate[controlled_node_idx] = flow_rate - du.storage[listened_node_idx] += flow_rate - end - # Set flow for connected edges src_id = inflow_id(graph, controlled_node_id) dst_id = outflow_id(graph, controlled_node_id) @@ -238,11 +226,19 @@ function continuous_control!( set_flow!(graph, src_id, controlled_node_id, flow_rate) set_flow!(graph, controlled_node_id, dst_id, flow_rate) + # Below du.storage is updated. This is normally only done + # in formulate!(du, connectivity, basin), but in this function + # flows are set so du has to be updated too. has_index, dst_idx = id_index(basin.node_id, dst_id) if has_index du.storage[dst_idx] += flow_rate end + has_index, src_idx = id_index(basin.node_id, src_id) + if has_index + du.storage[src_idx] -= flow_rate + end + # When the controlled pump flows out into fractional flow nodes if controls_pump for id in outflow_ids(graph, controlled_node_id) @@ -271,8 +267,15 @@ function formulate_flow!( t::Number, )::Nothing (; graph, basin) = p - (; node_id, allocated, active, demand, demand_itp, return_factor, min_level) = - user_demand + (; + node_id, + allocated, + active, + demand_itp, + return_factor, + min_level, + demand_from_timeseries, + ) = user_demand for (i, id) in enumerate(node_id) src_id = inflow_id(graph, id) @@ -290,7 +293,11 @@ function formulate_flow!( # effectively allocated = demand. for priority_idx in eachindex(allocated[i]) alloc_prio = allocated[i][priority_idx] - demand_prio = demand_itp[i][priority_idx](t) + demand_prio = if demand_from_timeseries[i] + demand_itp[i][priority_idx](t) + else + get_user_demand(p, id, priority_idx; reduced = false) + end alloc = min(alloc_prio, demand_prio) q += alloc end diff --git a/core/src/util.jl b/core/src/util.jl index 879f89726..b7d5b8e5c 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -600,25 +600,47 @@ function is_main_network(allocation_network_id::Int32)::Bool return allocation_network_id == 1 end -function get_user_demand(p::Parameters, node_id::NodeID, priority_idx::Int)::Float64 +function get_user_demand( + p::Parameters, + node_id::NodeID, + priority_idx::Int; + reduced::Bool = true, +)::Float64 (; user_demand, allocation) = p - (; demand) = user_demand + (; demand, demand_reduced) = user_demand user_demand_idx = findsorted(user_demand.node_id, node_id) n_priorities = length(allocation.priorities) - return demand[(user_demand_idx - 1) * n_priorities + priority_idx] + idx = (user_demand_idx - 1) * n_priorities + priority_idx + + if reduced + @assert is_active(allocation) "reduced demand accessed in non-allocation run" + return demand_reduced[idx] + else + return demand[idx] + end end function set_user_demand!( p::Parameters, node_id::NodeID, priority_idx::Int, - value::Float64, + value::Float64; + reduced::Bool = true, )::Nothing (; user_demand, allocation) = p - (; demand) = user_demand + (; demand, demand_reduced) = user_demand + user_demand_idx = findsorted(user_demand.node_id, node_id) n_priorities = length(allocation.priorities) - demand[(user_demand_idx - 1) * n_priorities + priority_idx] = value + idx = (user_demand_idx - 1) * n_priorities + priority_idx + + if reduced + @assert is_active(allocation) "reduced demand accessed in non-allocation run" + demand_reduced[idx] = value + else + demand[idx] = value + end + return nothing end diff --git a/core/src/write.jl b/core/src/write.jl index 4964f1754..d54adfc18 100644 --- a/core/src/write.jl +++ b/core/src/write.jl @@ -253,7 +253,7 @@ function allocation_flow_table( subnetwork_id::Vector{Int32}, priority::Vector{Int32}, flow_rate::Vector{Float64}, - collect_demands::BitVector, + optimization_type::Vector{String}, } (; config) = model (; record_flow) = model.integrator.p.allocation @@ -270,7 +270,7 @@ function allocation_flow_table( record_flow.subnetwork_id, record_flow.priority, record_flow.flow_rate, - record_flow.collect_demands, + record_flow.optimization_type, ) end diff --git a/core/test/allocation_test.jl b/core/test/allocation_test.jl index 996e4ed83..80253447b 100644 --- a/core/test/allocation_test.jl +++ b/core/test/allocation_test.jl @@ -1,5 +1,5 @@ @testitem "Allocation solve" begin - using Ribasim: NodeID + using Ribasim: NodeID, OptimizationType using ComponentArrays: ComponentVector import SQLite import JuMP @@ -27,7 +27,7 @@ Ribasim.set_flow!(graph, NodeID(:FlowBoundary, 1), NodeID(:Basin, 2), 4.5) # Source flow allocation_model = p.allocation.allocation_models[1] u = ComponentVector(; storage = zeros(length(p.basin.node_id))) - Ribasim.allocate!(p, allocation_model, 0.0, u) + Ribasim.allocate!(p, allocation_model, 0.0, u, OptimizationType.allocate) # Last priority (= 2) flows F = allocation_model.problem[:F] @@ -45,9 +45,9 @@ # Test getting and setting UserDemand demands (; user_demand) = p - Ribasim.set_user_demand!(p, NodeID(:UserDemand, 11), 2, Float64(π)) + Ribasim.set_user_demand!(p, NodeID(:UserDemand, 11), 2, Float64(π); reduced = false) @test user_demand.demand[4] ≈ π - @test Ribasim.get_user_demand(p, NodeID(:UserDemand, 11), 2) ≈ π + @test Ribasim.get_user_demand(p, NodeID(:UserDemand, 11), 2; reduced = false) ≈ π end @testitem "Allocation objective: linear absolute" begin @@ -199,7 +199,7 @@ end @testitem "allocation with main network optimization problem" begin using SQLite - using Ribasim: NodeID + using Ribasim: NodeID, OptimizationType using ComponentArrays: ComponentVector using JuMP @@ -221,18 +221,20 @@ end # Collecting demands u = ComponentVector(; storage = zeros(length(basin.node_id))) for allocation_model in allocation_models[2:end] - Ribasim.allocate!(p, allocation_model, t, u; collect_demands = true) + Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.internal_sources) + Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.collect_demands) end + # See the difference between these values here and in + # "subnetworks_with_sources" @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [4.0, 4.0, 0.0] @test subnetwork_demands[(NodeID(:Basin, 6), NodeID(:Pump, 24))] ≈ [0.004, 0.0, 0.0] - @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))] ≈ - [0.001, 0.002, 0.0011] + @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.002] # Solving for the main network, containing subnetworks as UserDemands allocation_model = allocation_models[1] (; problem) = allocation_model - Ribasim.allocate!(p, allocation_model, t, u) + Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.allocate) # Main network objective function objective = JuMP.objective_function(problem) @@ -257,6 +259,46 @@ end @test user_demand.allocated[7] ≈ [0.001, 0.0, 0.0] end +@testitem "subnetworks with sources" begin + using SQLite + using Ribasim: NodeID, OptimizationType + using ComponentArrays: ComponentVector + using JuMP + + toml_path = normpath( + @__DIR__, + "../../generated_testmodels/subnetworks_with_sources/ribasim.toml", + ) + @test ispath(toml_path) + cfg = Ribasim.Config(toml_path) + db_path = Ribasim.input_path(cfg, cfg.database) + db = SQLite.DB(db_path) + p = Ribasim.Parameters(db, cfg) + close(db) + + (; allocation, user_demand, graph, basin) = p + (; allocation_models, subnetwork_demands, subnetwork_allocateds) = allocation + t = 0.0 + + # Set flows of sources in subnetworks + Ribasim.set_flow!(graph, NodeID(:FlowBoundary, 58), NodeID(:Basin, 16), 1.0) + Ribasim.set_flow!(graph, NodeID(:FlowBoundary, 59), NodeID(:Basin, 44), 1e-3) + + # Collecting demands + u = ComponentVector(; storage = zeros(length(basin.node_id))) + for allocation_model in allocation_models[2:end] + Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.internal_sources) + Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.collect_demands) + end + + # See the difference between these values here and in + # "allocation with main network optimization problem", internal sources + # lower the subnetwork demands + @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [3.1, 4.0, 0.0] + @test subnetwork_demands[(NodeID(:Basin, 6), NodeID(:Pump, 24))] ≈ [0.004, 0.0, 0.0] + @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.001] +end + @testitem "Allocation level control" begin toml_path = normpath(@__DIR__, "../../generated_testmodels/level_demand/ribasim.toml") @test ispath(toml_path) @@ -326,7 +368,7 @@ end @testitem "flow_demand" begin using JuMP - using Ribasim: NodeID, NodeType + using Ribasim: NodeID, NodeType, OptimizationType toml_path = normpath(@__DIR__, "../../generated_testmodels/flow_demand/ribasim.toml") @test ispath(toml_path) @@ -373,38 +415,68 @@ end @test constraint_flow_demand_outflow.set.upper == 0.0 t = 0.0 - - ## Priority 1 - Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 1) + (; u) = model.integrator + optimization_type = OptimizationType.internal_sources + Ribasim.set_initial_values!(allocation_model, p, u, t) + + # Priority 1 + Ribasim.allocate_priority!( + allocation_model, + model.integrator.u, + p, + t, + 1, + optimization_type, + ) objective = JuMP.objective_function(problem) @test F_abs_flow_demand[node_id_with_flow_demand] in keys(objective.terms) - @test flow_demand.demand[1] == flow_demand.demand_itp[1](t) + # Reduced demand + @test flow_demand.demand[1] == flow_demand.demand_itp[1](t) - 0.001 @test JuMP.normalized_rhs(constraint_flow_out) == Inf ## Priority 2 - Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 2) - # The flow at priority 1 through the node with a flow demand at priority 2 - # is subtracted from this flow demand - @test flow_demand.demand[1] ≈ - flow_demand.demand_itp[1](t) - - Ribasim.get_user_demand(p, NodeID(NodeType.UserDemand, 6), 1) + Ribasim.allocate_priority!( + allocation_model, + model.integrator.u, + p, + t, + 2, + optimization_type, + ) + # No demand left + @test flow_demand.demand[1] ≈ 0.0 + # Allocated + @test JuMP.value(only(F_flow_buffer_in)) == 0.001 @test JuMP.normalized_rhs(constraint_flow_out) == 0.0 ## Priority 3 - Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 3) + Ribasim.allocate_priority!( + allocation_model, + model.integrator.u, + p, + t, + 3, + optimization_type, + ) @test JuMP.normalized_rhs(constraint_flow_out) == Inf # The flow from the source is used up in previous priorities @test JuMP.value(F[(NodeID(NodeType.LevelBoundary, 1), node_id_with_flow_demand)]) == 0 # So flow from the flow buffer is used for UserDemand #4 - @test JuMP.value(F_flow_buffer_out[node_id_with_flow_demand]) == - Ribasim.get_user_demand(p, NodeID(NodeType.UserDemand, 4), 3) + @test JuMP.value(F_flow_buffer_out[node_id_with_flow_demand]) == 0.001 # Flow taken from buffer @test JuMP.value(only(F_flow_buffer_out)) == user_demand.demand_itp[1][3](t) # No flow coming from level boundary @test JuMP.value(F[(only(level_boundary.node_id), node_id_with_flow_demand)]) == 0 ## Priority 4 - Ribasim.allocate_priority!(allocation_model, model.integrator.u, p, t, 4) + Ribasim.allocate_priority!( + allocation_model, + model.integrator.u, + p, + t, + 4, + optimization_type, + ) # Get demand from buffers d = user_demand.demand_itp[3][4](t) @assert JuMP.value(F[(NodeID(NodeType.UserDemand, 4), NodeID(NodeType.Basin, 7))]) + diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index 1a41b33b6..8a24a0a6f 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -93,9 +93,9 @@ :subnetwork_id, :priority, :flow_rate, - :collect_demands, + :optimization_type, ), - (DateTime, Int32, String, Int32, String, Int32, Int32, Int32, Float64, Bool), + (DateTime, Int32, String, Int32, String, Int32, Int32, Int32, Float64, String), ) @test Tables.schema(subgrid) == Tables.Schema( (:time, :subgrid_id, :subgrid_level), diff --git a/core/test/validation_test.jl b/core/test/validation_test.jl index 25ddeae06..d9eaa68d9 100644 --- a/core/test/validation_test.jl +++ b/core/test/validation_test.jl @@ -423,6 +423,7 @@ end [true], [0.0], [0.0], + [0.0], [[LinearInterpolation([-5.0, -5.0], [-1.8, 1.8])]], [true], [0.0, -0.0], diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index dabf834f4..e3669da7d 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -5,16 +5,26 @@ title: "Allocation" # Introduction Allocation is the process of assigning an allocated flow rate to demand nodes in the physical layer of the model based on information about sources, the different demand nodes over various priorities, constraints introduced by nodes, local water availability and graph topology. The allocation procedure implemented in Ribasim is heavily inspired by the [maximum flow problem](https://en.wikipedia.org/wiki/Maximum_flow_problem). -The allocation problem is solved per subnetwork of the Ribasim model. The subnetwork is used to formulate an optimization problem with the [JuMP](https://jump.dev/JuMP.jl/stable/) package, which is solved using the [HiGHS solver](https://highs.dev/). For more in-depth information see also the example of solving the maximum flow problem with `JuMP.jl` [here](https://jump.dev/JuMP.jl/stable/tutorials/linear/network_flows/#The-max-flow-problem). +The allocation problem is solved per subnetwork (and main network) of the Ribasim model. Each subnetwork is used to formulate an optimization problem with the [JuMP](https://jump.dev/JuMP.jl/stable/) package, which is solved using the [HiGHS solver](https://highs.dev/). For more in-depth information see also the example of solving the maximum flow problem with `JuMP.jl` [here](https://jump.dev/JuMP.jl/stable/tutorials/linear/network_flows/#The-max-flow-problem). + +:::{.callout-note} +within this *Allocation* section the main network is also considered to be a subnetwork. +::: # The high level algorithm -The allocation algorithm consists of 3 types of optimization problems: +The allocation algorithm contains 3 types of optimization: -1. **Subnetwork demand collection**: Collect the demands of a subnetwork from the main network by optimizing with unlimited capacity from the main network; -2. **Main network allocation**: Allocate to subnetworks with the above collected demand, and demands in the main network; -3. **Subnetwork allocation**: Allocate to demands in the subnetworks with the flows allocated to the subnetwork in the main network allocation. +- `internal_sources`, where flows are allocated within a subnetwork by only using sources inside the subnetwork; +- `collect_demands`, where flows are allocated within a subnetwork by only using the main network inlet(s) as a source, with demands reduced by allocations in `internal_sources`. The allocated flows in this optimization type are not used. The goal is to see the flow through the main network inlet(s), which is interpreted as the subnetwork demand; +- `allocate`, where all available sources are used and the final allocated flows for the users are determined. -The total allocation algorithm consists of performing 1 for all subnetworks, then performing 2, then performing 3 for all subnetworks. Not having a main network is also supported, then 1 and 2 are skipped. +The full algorithm goes through the following steps: + +1. Perform `internal_sources` followed by `collect_demands` for all subnetworks apart from the main network; +2. Perform `allocate` for the main network; +3. Perform `allocate` for the other subnetworks. + +If no main network is present, then 1 and 2 are skipped. # Elements of allocation @@ -228,7 +238,7 @@ $$ {#eq-fractionalflowconstraint} ## Example -The following is an example of an optimization problem for the example shown [here](../python/examples.ipynb#model-with-allocation): +The following is an example of an optimization problem for the example shown [here](../python/examples.ipynb#model-with-allocation-user-demand): ```{julia} @@ -247,10 +257,8 @@ t = 0.0 priority_idx = 1 Ribasim.set_flow!(p.graph, NodeID(:FlowBoundary, 1), NodeID(:Basin, 2), 1.0) - -Ribasim.adjust_capacities_edge!(allocation_model, p, priority_idx) -Ribasim.adjust_capacities_source!(allocation_model, p, priority_idx) Ribasim.set_objective_priority!(allocation_model, p, u, t, priority_idx) +Ribasim.set_initial_values!(allocation_model, p, u, t) println(p.allocation.allocation_models[1].problem) ``` diff --git a/python/ribasim_testmodels/ribasim_testmodels/__init__.py b/python/ribasim_testmodels/ribasim_testmodels/__init__.py index b45077c42..e4dd9dbad 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/__init__.py +++ b/python/ribasim_testmodels/ribasim_testmodels/__init__.py @@ -15,6 +15,7 @@ main_network_with_subnetworks_model, minimal_subnetwork_model, subnetwork_model, + subnetworks_with_sources_model, user_demand_model, ) from ribasim_testmodels.backwater import backwater_model @@ -89,6 +90,7 @@ "pump_discrete_control_model", "rating_curve_model", "subnetwork_model", + "subnetworks_with_sources_model", "tabulated_rating_curve_control_model", "tabulated_rating_curve_model", "trivial_model", diff --git a/python/ribasim_testmodels/ribasim_testmodels/allocation.py b/python/ribasim_testmodels/ribasim_testmodels/allocation.py index 2ff7bac8b..592a93ec7 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/allocation.py +++ b/python/ribasim_testmodels/ribasim_testmodels/allocation.py @@ -843,6 +843,26 @@ def main_network_with_subnetworks_model() -> Model: return model +def subnetworks_with_sources_model() -> Model: + """Generate a model with subnetworks which contain sources.""" + + model = main_network_with_subnetworks_model() + + model.flow_boundary.add( + Node(58, Point(3, 5), subnetwork_id=3), + [flow_boundary.Static(flow_rate=[0.003])], + ) + model.flow_boundary.add( + Node(59, Point(28, 5), subnetwork_id=7), + [flow_boundary.Static(flow_rate=[0.003])], + ) + + model.edge.add(model.flow_boundary[58], model.basin[16], subnetwork_id=3) + model.edge.add(model.flow_boundary[59], model.basin[44], subnetwork_id=7) + + return model + + def level_demand_model() -> Model: """Small model with a LevelDemand.""" From 07d60779a94b8879b006c184d37edc17badbc44c Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Tue, 2 Apr 2024 18:36:23 +0200 Subject: [PATCH 025/158] Update Julia manifest (#1341) Update Julia dependencies to the latest version. --------- Co-authored-by: GitHub Co-authored-by: Martijn Visser --- Manifest.toml | 187 ++++++++++++++++++++++++++-------------------- core/Project.toml | 2 +- 2 files changed, 108 insertions(+), 81 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 09316d88f..e5e063cf4 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -5,9 +5,9 @@ manifest_format = "2.0" project_hash = "22708fb864a341d70b001d75765852e92f1f5399" [[deps.ADTypes]] -git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.6" +version = "0.2.7" [[deps.ANSIColoredPrinters]] git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" @@ -42,9 +42,9 @@ version = "0.1.36" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "e2a9873379849ce2ac9f9fa34b0e37bde5d5fe0a" +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.2" +version = "4.0.4" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -66,15 +66,16 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.2.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "881e43f1aa014a6f75c8fc0847860e00a1500846" +deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "44691067188f6bd1b2289552a23e4b7572f4528d" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.8.0" +version = "7.9.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" @@ -84,6 +85,7 @@ version = "7.8.0" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" @@ -91,9 +93,9 @@ version = "7.8.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "e46675dbc095ddfdf2b5fba247d5a25f34e1f8a2" +git-tree-sha1 = "6404a564c24a994814106c374bec893195e19bac" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.6.1" +version = "1.8.0" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -226,28 +228,32 @@ version = "1.0.5+1" [[deps.ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "e3ced166fcefe2352b73f9ae3e1cf6f2c5d4e806" +git-tree-sha1 = "dded0a186977e5a4a12b1f1224f73956e4e8e90a" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.10" +version = "0.15.11" [deps.ComponentArrays.extensions] ComponentArraysAdaptExt = "Adapt" ComponentArraysConstructionBaseExt = "ConstructionBase" ComponentArraysGPUArraysExt = "GPUArrays" + ComponentArraysOptimisersExt = "Optimisers" ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" ComponentArraysReverseDiffExt = "ReverseDiff" ComponentArraysSciMLBaseExt = "SciMLBase" ComponentArraysTrackerExt = "Tracker" + ComponentArraysTruncatedStacktracesExt = "TruncatedStacktraces" ComponentArraysZygoteExt = "Zygote" [deps.ComponentArrays.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + TruncatedStacktraces = "781d530d-4396-4725-bb49-402e4bee1e77" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.CompositionsBase]] @@ -266,9 +272,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" +git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.3.1" +version = "2.4.1" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] @@ -284,9 +290,9 @@ version = "0.17.6" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" +version = "1.5.5" [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" @@ -308,9 +314,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DBInterface]] -git-tree-sha1 = "6f93ab5557fa0ffd02e3d751186f329ac21da791" +git-tree-sha1 = "a444404b3f94deaa43ca2a58e18153a82695282b" uuid = "a10d1c49-ce27-4219-8d33-6db1a4562965" -version = "2.6.0" +version = "2.6.1" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -324,10 +330,10 @@ uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" version = "1.6.1" [[deps.DataInterpolations]] -deps = ["LinearAlgebra", "PrettyTables", "RecipesBase", "Reexport"] -git-tree-sha1 = "79e533ab41ad6784eea6eafbf3f1c615c9a1349e" +deps = ["FindFirstFunctions", "LinearAlgebra", "PrettyTables", "RecipesBase", "Reexport"] +git-tree-sha1 = "e31c460739fb1beb9d84cc851b670b43ef493fda" uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -version = "4.7.0" +version = "4.7.1" [deps.DataInterpolations.extensions] DataInterpolationsChainRulesCoreExt = "ChainRulesCore" @@ -364,10 +370,10 @@ uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.4.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "b19b2bb1ecd1271334e4b25d605e50f75e68fcae" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "4fa023dbb15b3485426bbc6c43e030c14250d664" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.148.0" +version = "6.149.0" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -395,9 +401,9 @@ version = "6.148.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "32b4359949681e76eb09f9b7a4536cb664172980" +git-tree-sha1 = "a731383bbafb87d496fb5e66f60c40e4a5f8f726" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.3.0" +version = "3.4.0" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -453,9 +459,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "59c44d8fbc651c0395d8a6eda64b05ce316f58b4" +git-tree-sha1 = "1bc328eec34ffd80357f84a84bb30e4374e9bd60" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.5" +version = "0.6.6" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -496,9 +502,9 @@ version = "2.0.2" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" +git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.2" +version = "1.16.3" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -519,11 +525,16 @@ version = "1.9.3" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +[[deps.FindFirstFunctions]] +git-tree-sha1 = "e90fef90f7d75e6a5b435b0fd65609759f99717a" +uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" +version = "1.2.0" + [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" +git-tree-sha1 = "bc0c5092d6caaea112d3c8e3b238d61563c58d5f" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.22.0" +version = "2.23.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -558,9 +569,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" +git-tree-sha1 = "8ae30e786837ce0a24f5e2186938bf3251ab94b2" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.7" +version = "0.4.8" [[deps.Future]] deps = ["Random"] @@ -574,9 +585,9 @@ version = "0.1.6" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" +git-tree-sha1 = "af49a0851f8113fcfae2ef5027c6d49d0acec39b" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.3" +version = "0.5.4" [[deps.Glob]] git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" @@ -597,9 +608,9 @@ version = "1.9.0" [[deps.HiGHS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "f596ee3668df8587158bcaef1ae47bf75bc0fe39" +git-tree-sha1 = "9a550d55c49334beb538c5ad9504f07fc29a13dc" uuid = "8fd58aa0-07eb-5a78-9b36-339c94fd15ea" -version = "1.6.0+1" +version = "1.7.0+0" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] @@ -658,9 +669,13 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.InverseFunctions]] deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +git-tree-sha1 = "896385798a8d49a255c398bd49162062e4a4c435" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" +version = "0.1.13" +weakdeps = ["Dates"] + + [deps.InverseFunctions.extensions] + DatesExt = "Dates" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -712,9 +727,9 @@ weakdeps = ["ArrowTypes"] [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] -git-tree-sha1 = "4e44cff1595c6c02cdbca4e87ce376e63c33a584" +git-tree-sha1 = "a39e8a1828f8ca4de035cca341979f4d0dbc6eae" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.20.0" +version = "1.21.0" [deps.JuMP.extensions] JuMPDimensionalDataExt = "DimensionalData" @@ -724,9 +739,9 @@ version = "1.20.0" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "7b762d81887160169ddfc93a47e5fd7a6a3e78ef" +git-tree-sha1 = "e9648d90370e2d0317f9518c9c6e0841db54a90b" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.29" +version = "0.9.31" [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] @@ -815,10 +830,10 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "b2cc25978eb8efda63ee5786f2ed72c35a711b61" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "775e5e5d9ace42ef8deeb236587abc69e70dc455" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.26.0" +version = "2.28.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -876,9 +891,9 @@ version = "1.0.3" [[deps.LoopVectorization]] deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" +git-tree-sha1 = "a13f3be5d84b9c95465d743c82af0b094ef9c2e2" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.166" +version = "0.12.169" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -926,9 +941,9 @@ version = "1.1.0" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "679c1aec6934d322783bd15db4d18f898653be4f" +git-tree-sha1 = "d268e82322cc5df142a3664d03d59adecd53abf9" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.27.0" +version = "1.27.1" [[deps.MatrixFactorizations]] deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] @@ -938,9 +953,9 @@ version = "2.1.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "a85c6a98c9e5a2a7046bc1bb89f28a3241e1de4d" +git-tree-sha1 = "b1f2f92feb0bc201e91c155ef575bcc7d9cc3526" uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.1" +version = "0.1.2" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -985,9 +1000,9 @@ version = "0.2.4" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "302fd161eb1c439e4115b51ae456da4e9984f130" +git-tree-sha1 = "2d106538aebe1c165e16d277914e10c550e9d9b7" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.1" +version = "1.4.2" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1007,9 +1022,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "TimerOutputs"] -git-tree-sha1 = "f409959245f04c8004bd3711915d71c93b2043f7" +git-tree-sha1 = "c32743c2321e99adf8bbe03145ce8e2bf2fcfbf9" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.7.3" +version = "3.9.0" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -1069,15 +1084,15 @@ version = "1.6.3" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "287159684e32db56c82dbf545004a7884c6e5198" +git-tree-sha1 = "91079af18db922354197eeae2a17b177079e24c1" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.74.0" +version = "6.74.1" [[deps.OteraEngine]] deps = ["Markdown", "Pkg", "TOML"] -git-tree-sha1 = "69e36fecf524a1da7d76a8ae3e70a221d86d2867" +git-tree-sha1 = "c92627db1d45055c1b33b8133e829e1bce9d04fd" uuid = "b2d7f28f-acd6-4007-8b26-bc27716e5513" -version = "0.5.1" +version = "0.5.2" [[deps.PackageCompiler]] deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs", "p7zip_jll"] @@ -1110,9 +1125,9 @@ version = "1.10.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" +git-tree-sha1 = "09f59c6dda37c7f73efddc5bdf6f92bc940eb484" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.9" +version = "0.7.12" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1140,9 +1155,9 @@ version = "0.4.20" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] @@ -1192,9 +1207,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" +git-tree-sha1 = "d8f131090f2e44b145084928856a561c83f43b27" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.10.1" +version = "3.13.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1283,10 +1298,10 @@ uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8" version = "3.45.0+0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "d15c65e25615272e1b1c5edb1d307484c7942824" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.29.0" +version = "2.31.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1313,6 +1328,11 @@ git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" version = "0.3.8" +[[deps.SciMLStructures]] +git-tree-sha1 = "5833c10ce83d690c124beedfe5f621b50b02ba4d" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.1.0" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" @@ -1339,20 +1359,26 @@ deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.SimpleNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "873a1bf90744acfa615e45cd5dddfd0ee89a094f" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "d4c17fc60bf5f8f2be02777c4836878f27ac7b9b" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.5.0" +version = "1.7.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" SimpleNonlinearSolvePolyesterForwardDiffExt = "PolyesterForwardDiff" + SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" SimpleNonlinearSolveStaticArraysExt = "StaticArrays" + SimpleNonlinearSolveTrackerExt = "Tracker" + SimpleNonlinearSolveZygoteExt = "Zygote" [deps.SimpleNonlinearSolve.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1500,9 +1526,10 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" +deps = ["Accessors", "ArrayInterface", "MacroTools", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "4b7f4c80449d8baae8857d55535033981862619c" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.8" +version = "0.3.15" [[deps.TOML]] deps = ["Dates"] @@ -1573,9 +1600,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.23" [[deps.TranscodingStreams]] -git-tree-sha1 = "3caa21522e7efac1ba21834a03734c57b4611c7e" +git-tree-sha1 = "71509f04d045ec714c4748c785a59045c3736349" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.4" +version = "0.10.7" weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] @@ -1583,9 +1610,9 @@ weakdeps = ["Random", "Test"] [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" +git-tree-sha1 = "7ee8ed8904e7dd5d31bb46294ef5644d9e2e44e4" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.20" +version = "0.1.21" [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" @@ -1652,9 +1679,9 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.6+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] diff --git a/core/Project.toml b/core/Project.toml index edfb9b7ed..a268ed876 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -56,7 +56,7 @@ DataInterpolations = "4.4" DataStructures = "0.18" Dates = "<0.0.1,1" Dictionaries = "0.3.25, 0.4" -DiffEqCallbacks = "2.29.1, 3" +DiffEqCallbacks = "=3.4.0" Documenter = "0.27,1" EnumX = "1.0" FiniteDiff = "2.21" From 63aeeccaebb8b2f8208c1752f9295e91581a4b16 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 3 Apr 2024 08:26:54 +0200 Subject: [PATCH 026/158] Update pixi lock file (#1343) Update pixi dependencies to the latest version. Co-authored-by: GitHub --- pixi.lock | 7626 +++++++++++++++++++++++++++-------------------------- 1 file changed, 3898 insertions(+), 3728 deletions(-) diff --git a/pixi.lock b/pixi.lock index 48ee66a1f..0619ee985 100644 --- a/pixi.lock +++ b/pixi.lock @@ -17,17 +17,17 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-compression-0.2.18-h4466546_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-event-stream-0.4.2-he635cd5_6.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-http-0.8.1-hbfc29b2_7.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-io-0.14.6-h6b388c4_1.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-io-0.14.6-h96cd748_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-mqtt-0.10.3-hffff1cc_2.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-s3-0.5.2-h4893938_2.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-s3-0.5.4-h4893938_0.conda - 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- aws-crt-cpp >=0.26.3,<0.26.4.0a0 + - aws-crt-cpp >=0.26.4,<0.26.5.0a0 - aws-sdk-cpp >=1.11.267,<1.11.268.0a0 - azure-core-cpp >=1.11.1,<1.11.2.0a0 - azure-storage-blobs-cpp >=12.10.0,<12.10.1.0a0 @@ -32589,7 +32760,7 @@ packages: - fmt >=10.2.1,<11.0a0 - libabseil * cxx17* - libabseil >=20240116.1,<20240117.0a0 - - libcurl >=8.5.0,<9.0a0 + - libcurl >=8.6.0,<9.0a0 - libgcc-ng >=12 - libgoogle-cloud >=2.22.0,<2.23.0a0 - libgoogle-cloud-storage >=2.22.0,<2.23.0a0 @@ -32601,20 +32772,19 @@ packages: - zstd >=1.5.5,<1.6.0a0 license: MIT license_family: MIT - size: 4582713 - timestamp: 1710344732755 + size: 4677029 + timestamp: 1711294421001 - kind: conda name: tiledb - version: 2.20.1 - build: he1859ca_4 - build_number: 4 - subdir: osx-64 - url: https://conda.anaconda.org/conda-forge/osx-64/tiledb-2.20.1-he1859ca_4.conda - sha256: d8e18f6743032419d47119685b175293dc0e39ad1bbb44cb14f7512e69895014 - md5: 70b68c15f6aaba03edc12aa5d48d9e9a + version: 2.21.1 + build: hbfef6ee_1 + build_number: 1 + subdir: osx-arm64 + url: https://conda.anaconda.org/conda-forge/osx-arm64/tiledb-2.21.1-hbfef6ee_1.conda + sha256: 00bea8634468cd45b0855a376d1f0927ea4cdc860fdaae6af9bc912e92511d4e + md5: 8559b34c7ba8001f5ba173d129683be1 depends: - - __osx >=10.13 - - aws-crt-cpp >=0.26.3,<0.26.4.0a0 + - aws-crt-cpp >=0.26.4,<0.26.5.0a0 - aws-sdk-cpp >=1.11.267,<1.11.268.0a0 - azure-core-cpp >=1.11.1,<1.11.2.0a0 - azure-storage-blobs-cpp >=12.10.0,<12.10.1.0a0 @@ -32623,7 +32793,7 @@ packages: - fmt >=10.2.1,<11.0a0 - libabseil * cxx17* - libabseil >=20240116.1,<20240117.0a0 - - libcurl >=8.5.0,<9.0a0 + - libcurl >=8.6.0,<9.0a0 - libcxx >=16 - libgoogle-cloud >=2.22.0,<2.23.0a0 - libgoogle-cloud-storage >=2.22.0,<2.23.0a0 @@ -32634,8 +32804,8 @@ packages: - zstd >=1.5.5,<1.6.0a0 license: MIT license_family: MIT - size: 4103043 - timestamp: 1710364045232 + size: 3704649 + timestamp: 1711295284758 - kind: conda name: tinycss2 version: 1.2.1 @@ -32987,19 +33157,19 @@ packages: timestamp: 1710254564088 - kind: conda name: trove-classifiers - version: 2024.3.3 + version: 2024.3.25 build: pyhd8ed1ab_0 subdir: noarch noarch: python - url: https://conda.anaconda.org/conda-forge/noarch/trove-classifiers-2024.3.3-pyhd8ed1ab_0.conda - sha256: 4eb751b0a79f28e62657b6e1c751a0af78b78ea858d223c3b7b03ea11a89a144 - md5: 8ea774e1b108dc9a1a8358a483b4cc6d + url: https://conda.anaconda.org/conda-forge/noarch/trove-classifiers-2024.3.25-pyhd8ed1ab_0.conda + sha256: 909b4288bd2be8566f6d0a311d75a7e0e1cf81c42c19c97b1fc7d043c3db3301 + md5: e565e537d9760fc5d6d02ae4521a144b depends: - python >=3.7 license: Apache-2.0 license_family: Apache - size: 18266 - timestamp: 1709548253641 + size: 18393 + timestamp: 1711440195159 - kind: conda name: twine version: 5.0.0 @@ -33026,14 +33196,13 @@ packages: timestamp: 1707690947551 - kind: conda name: typeguard - version: 4.1.5 - build: pyhd8ed1ab_1 - build_number: 1 + version: 4.2.1 + build: pyhd8ed1ab_0 subdir: noarch noarch: python - url: https://conda.anaconda.org/conda-forge/noarch/typeguard-4.1.5-pyhd8ed1ab_1.conda - sha256: df63f90625d2eaefcb6990437b941c1c90ec3c224bc65a2becac928542d0aa5f - md5: 59d22e0ca481b057b94d54fc9ebacb13 + url: https://conda.anaconda.org/conda-forge/noarch/typeguard-4.2.1-pyhd8ed1ab_0.conda + sha256: dd140e850215c729a50cbface4a1fc640dcc91f8da43ce467977a298c4dfe89a + md5: 47102c2390ebdc73a8a1843e77dab61e depends: - importlib_metadata >=3.6 - python >=3.8 @@ -33042,8 +33211,8 @@ packages: - pytest >=7 license: MIT license_family: MIT - size: 33753 - timestamp: 1698176750792 + size: 34007 + timestamp: 1711272969310 - kind: conda name: types-python-dateutil version: 2.9.0.20240316 @@ -33202,22 +33371,22 @@ packages: - kind: conda name: ucx version: 1.15.0 - build: h11edf95_7 - build_number: 7 + build: ha691c75_8 + build_number: 8 subdir: linux-64 - url: https://conda.anaconda.org/conda-forge/linux-64/ucx-1.15.0-h11edf95_7.conda - sha256: 3e381ec5918045a43e0f349214a4d38e53990897ba07a6abf025f9e0156acaf2 - md5: 20a94f617ad76922f8737ad1fe317f4d + url: https://conda.anaconda.org/conda-forge/linux-64/ucx-1.15.0-ha691c75_8.conda + sha256: 85b40ac6607c9e4e32bcb13e95da41ff48a10f813df0c1e74ff32412e1f7da35 + md5: 3f9bc6137b240642504a6c9b07a10c25 depends: - libgcc-ng >=12 - libstdcxx-ng >=12 - - rdma-core >=50.0 + - rdma-core >=51.0 constrains: - cuda-version >=11.2,<12 license: BSD-3-Clause license_family: BSD - size: 6847943 - timestamp: 1710357262334 + size: 6842006 + timestamp: 1712025621683 - kind: conda name: ukkonen version: 1.0.1 @@ -33649,19 +33818,20 @@ packages: timestamp: 1701630814576 - kind: conda name: wheel - version: 0.42.0 - build: pyhd8ed1ab_0 + version: 0.43.0 + build: pyhd8ed1ab_1 + build_number: 1 subdir: noarch noarch: python - url: https://conda.anaconda.org/conda-forge/noarch/wheel-0.42.0-pyhd8ed1ab_0.conda - sha256: 80be0ccc815ce22f80c141013302839b0ed938a2edb50b846cf48d8a8c1cfa01 - md5: 1cdea58981c5cbc17b51973bcaddcea7 + url: https://conda.anaconda.org/conda-forge/noarch/wheel-0.43.0-pyhd8ed1ab_1.conda + sha256: cb318f066afd6fd64619f14c030569faf3f53e6f50abf743b4c865e7d95b96bc + md5: 0b5293a157c2b5cd513dd1b03d8d3aae depends: - - python >=3.7 + - python >=3.8 license: MIT license_family: MIT - size: 57553 - timestamp: 1701013309664 + size: 57963 + timestamp: 1711546009410 - kind: conda name: win_inet_pton version: 1.1.0 @@ -33889,13 +34059,13 @@ packages: timestamp: 1699533495284 - kind: conda name: xarray - version: 2024.2.0 + version: 2024.3.0 build: pyhd8ed1ab_0 subdir: noarch noarch: python - url: https://conda.anaconda.org/conda-forge/noarch/xarray-2024.2.0-pyhd8ed1ab_0.conda - sha256: 4b0a8143f5c501246214823fe543e9d0749c950fdbdd39de6d8cd6209da2259f - md5: 8e25aab3323476d4fd0b5f6bad05d403 + url: https://conda.anaconda.org/conda-forge/noarch/xarray-2024.3.0-pyhd8ed1ab_0.conda + sha256: 74e4cea340517ce7c51c36efc1d544d3a98fcdb62a429b6b1a59a1917b412c10 + md5: 772d7ee42b65d0840130eabd5bd3fc17 depends: - numpy >=1.23 - packaging >=22 @@ -33903,29 +34073,29 @@ packages: - python >=3.9 constrains: - bottleneck >=1.3 - - h5py >=3.6 + - sparse >=0.13 + - nc-time-axis >=1.4 + - scipy >=1.8 - zarr >=2.12 + - flox >=0.5 + - netcdf4 >=1.6.0 + - cartopy >=0.20 - h5netcdf >=1.0 + - dask-core >=2022.7 - cftime >=1.6 - - distributed >=2022.7 - - matplotlib-base >=3.5 - - flox >=0.5 - numba >=0.55 - - scipy >=1.8 - - nc-time-axis >=1.4 - - pint >=0.19 - - toolz >=0.12 - - netcdf4 >=1.6.0 - - seaborn >=0.11 - hdf5 >=1.12 - - dask-core >=2022.7 - - sparse >=0.13 - - cartopy >=0.20 - iris >=3.2 + - toolz >=0.12 + - h5py >=3.6 + - distributed >=2022.7 + - matplotlib-base >=3.5 + - seaborn >=0.11 + - pint >=0.19 license: Apache-2.0 license_family: APACHE - size: 741597 - timestamp: 1708349308763 + size: 765419 + timestamp: 1711742257463 - kind: conda name: xcb-util version: 0.4.0 From 5ae71c28be363107b99147fd06a828dc2cb084a0 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Wed, 3 Apr 2024 11:12:24 +0200 Subject: [PATCH 027/158] CompatHelper: Don't bump equality constraints (#1345) This will avoid unwanted CompatHelper PRs like https://github.com/Deltares/Ribasim/pull/1342. --- .github/workflows/core_compat_helper.yml | 7 +++++-- core/Project.toml | 2 +- 2 files changed, 6 insertions(+), 3 deletions(-) diff --git a/.github/workflows/core_compat_helper.yml b/.github/workflows/core_compat_helper.yml index ac35110da..bd8575361 100644 --- a/.github/workflows/core_compat_helper.yml +++ b/.github/workflows/core_compat_helper.yml @@ -17,7 +17,7 @@ jobs: - name: Install Julia, but only if it is not already available in the PATH uses: julia-actions/setup-julia@v1 with: - version: '1' + version: "1" arch: ${{ runner.arch }} if: steps.julia_in_path.outcome != 'success' - name: "Add the General registry via Git" @@ -37,7 +37,10 @@ jobs: - name: "Run CompatHelper" run: | import CompatHelper - CompatHelper.main(; subdirs=["core"]) + CompatHelper.main(; + subdirs=["core"], + bump_compat_containing_equality_specifier=false, + ) shell: julia --color=yes {0} env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/core/Project.toml b/core/Project.toml index a268ed876..99f416650 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -82,7 +82,7 @@ TOML = "<0.0.1,1" Tables = "1" TerminalLoggers = "0.1.7" Test = "<0.0.1,1" -TimeZones = "=1.14.0, 1" +TimeZones = "=1.14.0" TimerOutputs = "0.5" TranscodingStreams = "0.9,0.10" julia = "1.10" From 4cbd796c3e69713e186bbd6f059d0b8cf98937f5 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Wed, 3 Apr 2024 14:59:03 +0200 Subject: [PATCH 028/158] Fix allocation arrow bug (#1347) Fixes https://github.com/Deltares/Ribasim/issues/1321. There was indeed a bug for the `demand` column, but the `realized` column is correct since that one is cumulative over all priorities. --- core/src/allocation_optim.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 2d6cf45b1..5965298ea 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -758,7 +758,7 @@ function save_demands_and_allocations!( if node_id.type == NodeType.UserDemand has_demand = true user_demand_idx = findsorted(user_demand.node_id, node_id) - demand = user_demand.demand[user_demand_idx] + demand = get_user_demand(p, node_id, priority_idx; reduced = false) allocated = user_demand.allocated[user_demand_idx][priority_idx] #NOTE: instantaneous realized = get_flow(graph, inflow_id(graph, node_id), node_id, 0) From 7bb354fdfc0961bfa5273a26f9caf833eba080e1 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 4 Apr 2024 09:53:34 +0200 Subject: [PATCH 029/158] Simplify sparsity.jl (#1349) Fixes https://github.com/Deltares/Ribasim/issues/1317. Obtaining the Jacobian takes a coarser (with some false positives) but easier to maintain approach. Special care must still be taken with e.g. continuous control concepts, where basins that are further apart (topologically) than 1 node can depend on each other. This does not fix all stability problems in the model by @harm-nomden-sweco, but achieves the same progress as before without the requirement `sparse = false`. --- core/src/sparsity.jl | 183 ++++++---------------------------------- core/test/utils_test.jl | 6 +- 2 files changed, 30 insertions(+), 159 deletions(-) diff --git a/core/src/sparsity.jl b/core/src/sparsity.jl index a1be7b2e6..6493bee60 100644 --- a/core/src/sparsity.jl +++ b/core/src/sparsity.jl @@ -1,5 +1,5 @@ """ -Get a sparse matrix whose sparsity matches the sparsity of the Jacobian +Get a sparse matrix whose sparsity matches (with some false positives) the sparsity of the Jacobian of the ODE problem. All nodes are taken into consideration, also the ones that are inactive. @@ -11,124 +11,35 @@ from the naming convention of this sparsity structure in the differentialequations.jl docs. """ function get_jac_prototype(p::Parameters)::SparseMatrixCSC{Float64, Int64} - (; basin, pid_control) = p + (; basin, pid_control, graph) = p n_basins = length(basin.node_id) n_states = n_basins + length(pid_control.node_id) jac_prototype = spzeros(n_states, n_states) - for nodefield in nodefields(p) - update_jac_prototype!(jac_prototype, p, getfield(p, nodefield)) - end - + update_jac_prototype!(jac_prototype, basin, graph) + update_jac_prototype!(jac_prototype, pid_control, basin, graph) return jac_prototype end """ -If both the unique node upstream and the unique node downstream of these -nodes are basins, then these directly depend on eachother and affect the Jacobian 2x -Basins always depend on themselves. -""" -function update_jac_prototype!( - jac_prototype::SparseMatrixCSC{Float64, Int64}, - p::Parameters, - node::Union{LinearResistance, ManningResistance}, -)::Nothing - (; basin, graph) = p - - for id in node.node_id - id_in = inflow_id(graph, id) - id_out = outflow_id(graph, id) - - has_index_in, idx_in = id_index(basin.node_id, id_in) - has_index_out, idx_out = id_index(basin.node_id, id_out) - - if has_index_in - jac_prototype[idx_in, idx_in] = 1.0 - end - - if has_index_out - jac_prototype[idx_out, idx_out] = 1.0 - end - - if has_index_in && has_index_out - jac_prototype[idx_in, idx_out] = 1.0 - jac_prototype[idx_out, idx_in] = 1.0 - end - end - return nothing -end - -""" -Method for nodes that do not contribute to the Jacobian -""" -function update_jac_prototype!( - jac_prototype::SparseMatrixCSC{Float64, Int64}, - p::Parameters, - node::AbstractParameterNode, -)::Nothing - node_type = nameof(typeof(node)) - - if !isa( - node, - Union{ - Basin, - DiscreteControl, - FlowBoundary, - FractionalFlow, - LevelBoundary, - Terminal, - }, - ) - error( - "It is not specified how nodes of type $node_type contribute to the Jacobian prototype.", - ) - end - return nothing -end - -""" -If both the unique node upstream and the nodes down stream (or one node further -if a fractional flow is in between) are basins, then the downstream basin depends -on the upstream basin(s) and affect the Jacobian as many times as there are downstream basins -Upstream basins always depend on themselves. +Add nonzeros for basins connected to eachother via 1 node and possibly a fractional flow node +Basins are also assumed to depend on themselves (main diagonal terms) """ function update_jac_prototype!( jac_prototype::SparseMatrixCSC{Float64, Int64}, - p::Parameters, - node::Union{Pump, Outlet, TabulatedRatingCurve, UserDemand}, + basin::Basin, + graph::MetaGraph, )::Nothing - (; basin, fractional_flow, graph) = p - - for (i, id) in enumerate(node.node_id) - id_in = inflow_id(graph, id) - - if hasfield(typeof(node), :is_pid_controlled) && node.is_pid_controlled[i] - continue - end - - # For inneighbors only directly connected basins give a contribution - has_index_in, idx_in = id_index(basin.node_id, id_in) - - # For outneighbors there can be directly connected basins - # or basins connected via a fractional flow - # (but not both at the same time!) - if has_index_in - jac_prototype[idx_in, idx_in] = 1.0 - - _, basin_idxs_out, has_fractional_flow_outneighbors = - get_fractional_flow_connected_basins(id, basin, fractional_flow, graph) - - if !has_fractional_flow_outneighbors - id_out = outflow_id(graph, id) - has_index_out, idx_out = id_index(basin.node_id, id_out) - - if has_index_out - jac_prototype[idx_in, idx_out] = 1.0 + for (idx_1, id) in enumerate(basin.node_id) + for id_neighbor in inoutflow_ids(graph, id) + for id_neighbor_neighbor in inoutflow_ids(graph, id_neighbor) + if id_neighbor_neighbor.type == NodeType.FractionalFlow + id_neighbor_neighbor = outflow_id(graph, id_neighbor_neighbor) end - else - for idx_out in basin_idxs_out - jac_prototype[idx_in, idx_out] = 1.0 + if id_neighbor_neighbor.type == NodeType.Basin + _, idx_2 = id_index(basin.node_id, id_neighbor_neighbor) + jac_prototype[idx_1, idx_2] = 1.0 end end end @@ -137,62 +48,22 @@ function update_jac_prototype!( end """ -The controlled basin affects itself and the basins upstream and downstream of the controlled pump -affect eachother if there is a basin upstream of the pump. The state for the integral term -and the controlled basin affect eachother, and the same for the integral state and the basin -upstream of the pump if it is indeed a basin. +Add nonzeros for the integral term and the basins on either side of the controlled node """ function update_jac_prototype!( jac_prototype::SparseMatrixCSC{Float64, Int64}, - p::Parameters, - node::PidControl, + pid_control::PidControl, + basin::Basin, + graph::MetaGraph, )::Nothing - (; basin, graph, pump) = p - - n_basins = length(basin.node_id) - - for i in eachindex(node.node_id) - listen_node_id = node.listen_node_id[i] - id = node.node_id[i] - - # ID of controlled pump/outlet + for (i, id) in enumerate(pid_control.node_id) + idx_integral = length(basin.node_id) + i id_controlled = only(outneighbor_labels_type(graph, id, EdgeType.control)) - - _, listen_idx = id_index(basin.node_id, listen_node_id) - - # Controlled basin affects itself - jac_prototype[listen_idx, listen_idx] = 1.0 - - # PID control integral state - pid_state_idx = n_basins + i - jac_prototype[listen_idx, pid_state_idx] = 1.0 - jac_prototype[pid_state_idx, listen_idx] = 1.0 - - if id_controlled in pump.node_id - id_pump_out = inflow_id(graph, id_controlled) - - # The basin downstream of the pump - has_index, idx_out_out = id_index(basin.node_id, id_pump_out) - - if has_index - # The basin downstream of the pump depends on PID control integral state - jac_prototype[pid_state_idx, idx_out_out] = 1.0 - - # The basin downstream of the pump also depends on the controlled basin - jac_prototype[listen_idx, idx_out_out] = 1.0 - end - else - id_outlet_in = outflow_id(graph, id_controlled) - - # The basin upstream of the outlet - has_index, idx_out_in = id_index(basin.node_id, id_outlet_in) - - if has_index - # The basin upstream of the outlet depends on the PID control integral state - jac_prototype[pid_state_idx, idx_out_in] = 1.0 - - # The basin upstream of the outlet also depends on the controlled basin - jac_prototype[listen_idx, idx_out_in] = 1.0 + for id_basin in inoutflow_ids(graph, id_controlled) + if id_basin.type == NodeType.Basin + _, idx_basin = id_index(basin.node_id, id_basin) + jac_prototype[idx_basin, idx_integral] = 1.0 + jac_prototype[idx_integral, idx_basin] = 1.0 end end end diff --git a/core/test/utils_test.jl b/core/test/utils_test.jl index c5e4d7af3..822164322 100644 --- a/core/test/utils_test.jl +++ b/core/test/utils_test.jl @@ -209,9 +209,9 @@ end @test jac_prototype.m == 4 @test jac_prototype.n == 4 - @test jac_prototype.colptr == [1, 3, 5, 7, 10] - @test jac_prototype.rowval == [1, 2, 1, 2, 2, 3, 2, 3, 4] - @test jac_prototype.nzval == ones(9) + @test jac_prototype.colptr == [1, 3, 5, 8, 11] + @test jac_prototype.rowval == [1, 2, 1, 2, 2, 3, 4, 2, 3, 4] + @test jac_prototype.nzval == ones(10) toml_path = normpath(@__DIR__, "../../generated_testmodels/pid_control/ribasim.toml") From 92b27066d7e9b8e52f679232b721ad1dd3ec7180 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Thu, 4 Apr 2024 16:55:43 +0200 Subject: [PATCH 030/158] Support specifying coordinate reference system (CRS) of geometries (#1339) Fixes https://github.com/Deltares/Ribasim/issues/1254 Breaking changes: - Adds new required TOML key "crs" - Adds new required `Model` parameter "crs" Note: we could avoid adding the TOML key by requiring `Model.read` to take `crs` as parameter. Not sure if that's an improvment though. --------- Co-authored-by: Martijn Visser --- core/src/config.jl | 1 + core/test/data/config_test.toml | 1 + .../data/logging_test_loglevel_debug.toml | 1 + core/test/data/logging_test_no_loglevel.toml | 1 + core/test/docs.toml | 5 ++ core/test/io_test.jl | 3 ++ docs/python/examples.ipynb | 19 ++----- python/ribasim/ribasim/geometry/edge.py | 16 ++---- python/ribasim/ribasim/input_base.py | 29 +++-------- python/ribasim/ribasim/model.py | 33 ++++++++---- python/ribasim/tests/test_io.py | 6 ++- python/ribasim/tests/test_model.py | 15 +++++- .../ribasim_testmodels/allocation.py | 10 ++++ .../ribasim_testmodels/backwater.py | 1 + .../ribasim_testmodels/basic.py | 3 ++ .../ribasim_testmodels/bucket.py | 2 + .../ribasim_testmodels/discrete_control.py | 5 ++ .../ribasim_testmodels/dutch_waterways.py | 52 +++++++++++-------- .../ribasim_testmodels/equations.py | 7 ++- .../ribasim_testmodels/invalid.py | 4 ++ .../ribasim_testmodels/pid_control.py | 2 + .../ribasim_testmodels/time.py | 1 + .../ribasim_testmodels/trivial.py | 1 + .../ribasim_testmodels/two_basin.py | 2 +- 24 files changed, 136 insertions(+), 84 deletions(-) diff --git a/core/src/config.jl b/core/src/config.jl index 4099fb7c1..07c9aa78c 100644 --- a/core/src/config.jl +++ b/core/src/config.jl @@ -120,6 +120,7 @@ end @option @addnodetypes struct Toml <: TableOption starttime::DateTime endtime::DateTime + crs::String ribasim_version::String input_dir::String results_dir::String diff --git a/core/test/data/config_test.toml b/core/test/data/config_test.toml index 10a24d614..5172e746d 100644 --- a/core/test/data/config_test.toml +++ b/core/test/data/config_test.toml @@ -1,5 +1,6 @@ starttime = 2019-01-01 endtime = 2019-12-31 +crs = "EPSG:28992" input_dir = "../../generated_testmodels/lhm" results_dir = "../../generated_testmodels/lhm" ribasim_version = "2024.6.1" diff --git a/core/test/data/logging_test_loglevel_debug.toml b/core/test/data/logging_test_loglevel_debug.toml index d3af856f6..19de40d72 100644 --- a/core/test/data/logging_test_loglevel_debug.toml +++ b/core/test/data/logging_test_loglevel_debug.toml @@ -1,5 +1,6 @@ starttime = 2019-01-01 endtime = 2019-12-31 +crs = "EPSG:28992" input_dir = "." results_dir = "results" ribasim_version = "2024.6.1" diff --git a/core/test/data/logging_test_no_loglevel.toml b/core/test/data/logging_test_no_loglevel.toml index c854a8cb6..6fba3712a 100644 --- a/core/test/data/logging_test_no_loglevel.toml +++ b/core/test/data/logging_test_no_loglevel.toml @@ -1,5 +1,6 @@ starttime = 2019-01-01 endtime = 2019-12-31 +crs = "EPSG:28992" input_dir = "." results_dir = "results" ribasim_version = "2024.6.1" diff --git a/core/test/docs.toml b/core/test/docs.toml index b8bb8b066..9cd0e31fc 100644 --- a/core/test/docs.toml +++ b/core/test/docs.toml @@ -3,6 +3,11 @@ starttime = 2019-01-01 # required endtime = 2021-01-01 # required +# Coordinate Reference System +# The accepted strings are documented here: +# https://proj.org/en/9.4/development/reference/functions.html#c.proj_create +crs = "EPSG:4326" # required + # input files input_dir = "." # required results_dir = "results" # required diff --git a/core/test/io_test.jl b/core/test/io_test.jl index e113b5ccc..1de92e5db 100644 --- a/core/test/io_test.jl +++ b/core/test/io_test.jl @@ -8,6 +8,7 @@ database = "path/to/file", input_dir = ".", results_dir = "results", + crs = "EPSG:28992", ribasim_version = string(Ribasim.pkgversion(Ribasim)), ) config = Ribasim.Config(toml, "model") @@ -21,6 +22,7 @@ database = "path/to/file", input_dir = "input", results_dir = "results", + crs = "EPSG:28992", ribasim_version = string(Ribasim.pkgversion(Ribasim)), ) config = Ribasim.Config(toml, "model") @@ -34,6 +36,7 @@ database = "/path/to/file", input_dir = ".", results_dir = "results", + crs = "EPSG:28992", ribasim_version = string(Ribasim.pkgversion(Ribasim)), ) config = Ribasim.Config(toml) diff --git a/docs/python/examples.ipynb b/docs/python/examples.ipynb index 4908afb22..27f3e3727 100644 --- a/docs/python/examples.ipynb +++ b/docs/python/examples.ipynb @@ -76,7 +76,7 @@ "metadata": {}, "outputs": [], "source": [ - "model = Model(starttime=\"2020-01-01\", endtime=\"2021-01-01\")" + "model = Model(starttime=\"2020-01-01\", endtime=\"2021-01-01\", crs=\"EPSG:4326\")" ] }, { @@ -457,7 +457,7 @@ "metadata": {}, "outputs": [], "source": [ - "model = Model(starttime=\"2020-01-01\", endtime=\"2021-01-01\")" + "model = Model(starttime=\"2020-01-01\", endtime=\"2021-01-01\", crs=\"EPSG:4326\")" ] }, { @@ -771,10 +771,7 @@ "metadata": {}, "outputs": [], "source": [ - "model = Model(\n", - " starttime=\"2020-01-01\",\n", - " endtime=\"2020-12-01\",\n", - ")" + "model = Model(starttime=\"2020-01-01\", endtime=\"2020-12-01\", crs=\"EPSG:4326\")" ] }, { @@ -1037,10 +1034,7 @@ "metadata": {}, "outputs": [], "source": [ - "model = Model(\n", - " starttime=\"2020-01-01\",\n", - " endtime=\"2020-01-20\",\n", - ")" + "model = Model(starttime=\"2020-01-01\", endtime=\"2020-01-20\", crs=\"EPSG:4326\")" ] }, { @@ -1430,10 +1424,7 @@ "metadata": {}, "outputs": [], "source": [ - "model = Model(\n", - " starttime=\"2020-01-01\",\n", - " endtime=\"2020-02-01\",\n", - ")" + "model = Model(starttime=\"2020-01-01\", endtime=\"2020-02-01\", crs=\"EPSG:4326\")" ] }, { diff --git a/python/ribasim/ribasim/geometry/edge.py b/python/ribasim/ribasim/geometry/edge.py index c6199dbaf..760055d7e 100644 --- a/python/ribasim/ribasim/geometry/edge.py +++ b/python/ribasim/ribasim/geometry/edge.py @@ -10,7 +10,6 @@ from pandera.dtypes import Int32 from pandera.typing import Series from pandera.typing.geopandas import GeoDataFrame, GeoSeries -from pydantic import model_validator from shapely.geometry import LineString, MultiLineString, Point from ribasim.input_base import SpatialTableModel @@ -45,13 +44,6 @@ class Config: class EdgeTable(SpatialTableModel[EdgeSchema]): """Defines the connections between nodes.""" - @model_validator(mode="after") - def empty_table(self) -> "EdgeTable": - if self.df is None: - self.df = GeoDataFrame[EdgeSchema]() - self.df.set_geometry("geometry", inplace=True) - return self - def add( self, from_node: NodeData, @@ -68,6 +60,8 @@ def add( edge_type = ( "control" if from_node.node_type in SPATIALCONTROLNODETYPES else "flow" ) + assert self.df is not None + table_to_append = GeoDataFrame[EdgeSchema]( data={ "from_node_type": pd.Series([from_node.node_type], dtype=str), @@ -79,12 +73,10 @@ def add( "subnetwork_id": pd.Series([subnetwork_id], dtype=pd.Int32Dtype()), }, geometry=geometry_to_append, + crs=self.df.crs, ) - if self.df is None: - self.df = table_to_append - else: - self.df = GeoDataFrame[EdgeSchema](pd.concat([self.df, table_to_append])) + self.df = GeoDataFrame[EdgeSchema](pd.concat([self.df, table_to_append])) def get_where_edge_type(self, edge_type: str) -> NDArray[np.bool_]: assert self.df is not None diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index 99a5ec1b3..8f57e6067 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -1,5 +1,4 @@ import re -import warnings from abc import ABC, abstractmethod from collections.abc import Callable, Generator from contextlib import closing @@ -39,7 +38,6 @@ delimiter = " / " gpd.options.io_engine = "pyogrio" -warnings.filterwarnings("ignore", category=UserWarning, module="pyogrio") context_file_loading: ContextVar[dict[str, Any]] = ContextVar( "file_loading", default={} @@ -134,15 +132,6 @@ def set_filepath(self, filepath: Path) -> None: self.filepath = filepath self.model_config["validate_assignment"] = True - @abstractmethod - def _save(self, directory: DirectoryPath, input_dir: DirectoryPath) -> None: - """Save this instance to disk. - - This method needs to be implemented by any class deriving from - FileModel. - """ - raise NotImplementedError() - @classmethod @abstractmethod def _load(cls, filepath: Path | None) -> dict[str, Any]: @@ -227,11 +216,7 @@ def _load(cls, filepath: Path | None) -> dict[str, Any]: else: return {} - def _save( - self, - directory: DirectoryPath, - input_dir: DirectoryPath, - ) -> None: + def _save(self, directory: DirectoryPath, input_dir: DirectoryPath) -> None: # TODO directory could be used to save an arrow file db_path = context_file_loading.get().get("database") if self.filepath is not None: @@ -239,9 +224,9 @@ def _save( self._write_arrow(self.filepath, directory, input_dir) elif db_path is not None: self.sort() - self._write_table(db_path) + self._write_geopackage(db_path) - def _write_table(self, temp_path: Path) -> None: + def _write_geopackage(self, temp_path: Path) -> None: """ Write the contents of the input to a database. @@ -366,16 +351,16 @@ def _from_db(cls, path: Path, table: str): return df - def _write_table(self, path: Path) -> None: + def _write_geopackage(self, path: Path) -> None: """ - Write the contents of the input to a database. + Write the contents of the input to the GeoPackage. Parameters ---------- path : Path """ assert self.df is not None - self.df.to_file(path, layer=self.tablename(), driver="GPKG", mode="a") + self.df.to_file(path, layer=self.tablename(), driver="GPKG") class ChildModel(BaseModel): @@ -436,7 +421,7 @@ def node_ids(self) -> set[int]: node_ids.update(table.node_ids()) return node_ids - def _save(self, directory: DirectoryPath, input_dir: DirectoryPath, **kwargs): + def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): for table in self._tables(): table._save(directory, input_dir) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 523eb9316..ccca20892 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -9,6 +9,7 @@ import tomli import tomli_w from matplotlib import pyplot as plt +from pandera.typing.geopandas import GeoDataFrame from pydantic import ( DirectoryPath, Field, @@ -39,11 +40,12 @@ Terminal, UserDemand, ) -from ribasim.geometry.edge import EdgeTable +from ribasim.geometry.edge import EdgeSchema, EdgeTable from ribasim.geometry.node import NodeTable from ribasim.input_base import ( ChildModel, FileModel, + SpatialTableModel, context_file_loading, ) from ribasim.utils import MissingOptionalModule @@ -57,6 +59,7 @@ class Model(FileModel): starttime: datetime.datetime endtime: datetime.datetime + crs: str input_dir: Path = Field(default=Path(".")) results_dir: Path = Field(default=Path("results")) @@ -97,6 +100,13 @@ def set_node_parent(self) -> "Model": setattr(v, "_parent_field", k) return self + @model_validator(mode="after") + def ensure_edge_table_is_present(self) -> "Model": + if self.edge.df is None: + self.edge.df = GeoDataFrame[EdgeSchema]() + self.edge.df.set_geometry("geometry", inplace=True, crs=self.crs) + return self + @field_serializer("input_dir", "results_dir") def serialize_path(self, path: Path) -> str: return str(path) @@ -151,6 +161,7 @@ def _write_toml(self, fn: Path) -> Path: return fn def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): + self.set_crs(self.crs) db_path = directory / input_dir / "database.gpkg" db_path.parent.mkdir(parents=True, exist_ok=True) db_path.unlink(missing_ok=True) @@ -170,9 +181,19 @@ def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): for sub in self._nodes(): sub._save(directory, input_dir) + def set_crs(self, crs: str) -> None: + self.crs = crs + self.edge.df = self.edge.df.set_crs(crs) + for sub in self._nodes(): + if sub.node.df is not None: + sub.node.df = sub.node.df.set_crs(crs) + for table in sub._tables(): + if isinstance(table, SpatialTableModel) and table.df is not None: + table.df = table.df.set_crs(crs) + def node_table(self) -> NodeTable: """Compute the full NodeTable from all node types.""" - df_chunks = [node.node.df for node in self._nodes()] + df_chunks = [node.node.df.set_crs(self.crs) for node in self._nodes()] df = pd.concat(df_chunks, ignore_index=True) node_table = NodeTable(df=df) node_table.sort() @@ -392,12 +413,6 @@ def to_xugrid(self): name="node_index", ) - if node_df.crs is None: - # TODO: can be removed when CRS is required, #1254 - projected = False - else: - projected = node_df.crs.is_projected - grid = xugrid.Ugrid1d( node_x=node_df.geometry.x, node_y=node_df.geometry.y, @@ -409,7 +424,7 @@ def to_xugrid(self): ) ), name="ribasim", - projected=projected, + projected=node_df.crs.is_projected, crs=node_df.crs, ) diff --git a/python/ribasim/tests/test_io.py b/python/ribasim/tests/test_io.py index e0b316106..46edcfbd6 100644 --- a/python/ribasim/tests/test_io.py +++ b/python/ribasim/tests/test_io.py @@ -117,7 +117,7 @@ def test_sort(level_setpoint_with_minmax, tmp_path): model.write(tmp_path / "basic/ribasim.toml") # write sorts the model in place assert table.df.iloc[0]["greater_than"] == 5.0 - model_loaded = ribasim.Model(filepath=tmp_path / "basic/ribasim.toml") + model_loaded = ribasim.Model.read(filepath=tmp_path / "basic/ribasim.toml") table_loaded = model_loaded.discrete_control.condition edge_loaded = model_loaded.edge assert table_loaded.df.iloc[0]["greater_than"] == 5.0 @@ -153,7 +153,9 @@ def test_roundtrip(trivial, tmp_path): def test_datetime_timezone(): # Due to a pydantic issue, a time zone was added. # https://github.com/Deltares/Ribasim/issues/1282 - model = ribasim.Model(starttime="2000-01-01", endtime="2001-01-01 00:00:00") + model = ribasim.Model( + starttime="2000-01-01", endtime="2001-01-01 00:00:00", crs="EPSG:28992" + ) assert isinstance(model.starttime, datetime) assert isinstance(model.endtime, datetime) assert model.starttime.tzinfo is None diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index 10d342b48..001ab889f 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -6,6 +6,7 @@ import pytest import xugrid from pydantic import ValidationError +from pyproj import CRS from ribasim.config import Solver from ribasim.geometry.edge import NodeData from ribasim.input_base import esc_id @@ -136,9 +137,11 @@ def test_node_ids_unsequential(basic): def test_tabulated_rating_curve_model(tabulated_rating_curve, tmp_path): model_orig = tabulated_rating_curve + model_orig.set_crs(model_orig.crs) basin_area = tabulated_rating_curve.basin.area.df assert basin_area is not None assert basin_area.geometry.geom_type.iloc[0] == "Polygon" + assert basin_area.crs == CRS.from_epsg(28992) model_orig.write(tmp_path / "tabulated_rating_curve/ribasim.toml") model_new = Model.read(tmp_path / "tabulated_rating_curve/ribasim.toml") pd.testing.assert_series_equal( @@ -186,6 +189,16 @@ def test_node_table(basic): assert df.subnetwork_id.dtype == pd.Int32Dtype() assert df.node_type.iloc[0] == "Basin" assert df.node_type.iloc[-1] == "Terminal" + assert df.crs == CRS.from_epsg(28992) + + +def test_edge_table(basic): + model = basic + df = model.edge.df + assert df.geometry.is_unique + assert df.from_node_id.dtype == np.int32 + assert df.subnetwork_id.dtype == pd.Int32Dtype() + assert df.crs == CRS.from_epsg(28992) def test_indexing(basic): @@ -224,7 +237,7 @@ def test_xugrid(basic, tmp_path): assert isinstance(uds, xugrid.UgridDataset) assert uds.grid.edge_dimension == "ribasim_nEdges" assert uds.grid.node_dimension == "ribasim_nNodes" - assert uds.grid.crs is None + assert uds.grid.crs == CRS.from_epsg(28992) assert uds.node_id.dtype == np.int32 uds.ugrid.to_netcdf(tmp_path / "ribasim.nc") uds = xugrid.open_dataset(tmp_path / "ribasim.nc") diff --git a/python/ribasim_testmodels/ribasim_testmodels/allocation.py b/python/ribasim_testmodels/ribasim_testmodels/allocation.py index 592a93ec7..1e102e8c0 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/allocation.py +++ b/python/ribasim_testmodels/ribasim_testmodels/allocation.py @@ -28,6 +28,7 @@ def user_demand_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", solver=Solver(algorithm="Tsit5"), ) @@ -78,6 +79,7 @@ def subnetwork_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-04-01", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=86400), ) @@ -162,6 +164,7 @@ def looped_subnetwork_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=86400), ) @@ -288,6 +291,7 @@ def minimal_subnetwork_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=86400), ) @@ -346,6 +350,7 @@ def fractional_flow_subnetwork_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=86400), ) @@ -433,6 +438,7 @@ def allocation_example_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-01-20", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=86400), ) @@ -545,6 +551,7 @@ def main_network_with_subnetworks_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-03-01", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=86400), ) @@ -869,6 +876,7 @@ def level_demand_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-02-01", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=1e5), ) model.flow_boundary.add( @@ -917,6 +925,7 @@ def flow_demand_model() -> Model: model = Model( starttime="2020-01-01 00:00:00", endtime="2021-01-01 00:00:00", + crs="EPSG:28992", allocation=Allocation(use_allocation=True, timestep=1e5), ) @@ -992,6 +1001,7 @@ def linear_resistance_demand_model(): model = Model( starttime="2020-01-01 00:00:00", endtime="2021-01-01 00:00:00", + crs="EPSG:28992", allocation=Allocation(use_allocation=True), ) diff --git a/python/ribasim_testmodels/ribasim_testmodels/backwater.py b/python/ribasim_testmodels/ribasim_testmodels/backwater.py index a01d563e0..0a70a3fbb 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/backwater.py +++ b/python/ribasim_testmodels/ribasim_testmodels/backwater.py @@ -23,6 +23,7 @@ def backwater_model(): model = ribasim.Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.flow_boundary.add( diff --git a/python/ribasim_testmodels/ribasim_testmodels/basic.py b/python/ribasim_testmodels/ribasim_testmodels/basic.py index 3ee3e6dda..271267b76 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/basic.py +++ b/python/ribasim_testmodels/ribasim_testmodels/basic.py @@ -25,6 +25,7 @@ def basic_model() -> ribasim.Model: model = ribasim.Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.logging = ribasim.Logging(verbosity="debug") @@ -243,6 +244,7 @@ def tabulated_rating_curve_model() -> ribasim.Model: model = ribasim.Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) # Setup tabulated rating curve: @@ -320,6 +322,7 @@ def outlet_model(): model = ribasim.Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", solver=ribasim.Solver(saveat=0), ) diff --git a/python/ribasim_testmodels/ribasim_testmodels/bucket.py b/python/ribasim_testmodels/ribasim_testmodels/bucket.py index 248ed3b8f..66ffe2abb 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/bucket.py +++ b/python/ribasim_testmodels/ribasim_testmodels/bucket.py @@ -14,6 +14,7 @@ def bucket_model() -> ribasim.Model: model = ribasim.Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.basin.add( @@ -42,6 +43,7 @@ def leaky_bucket_model() -> ribasim.Model: model = ribasim.Model( starttime="2020-01-01", endtime="2020-01-05", + crs="EPSG:28992", ) model.basin.add( diff --git a/python/ribasim_testmodels/ribasim_testmodels/discrete_control.py b/python/ribasim_testmodels/ribasim_testmodels/discrete_control.py index ab48a4696..aae7674c9 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/discrete_control.py +++ b/python/ribasim_testmodels/ribasim_testmodels/discrete_control.py @@ -22,6 +22,7 @@ def pump_discrete_control_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.basin.add( @@ -115,6 +116,7 @@ def flow_condition_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.flow_boundary.add( @@ -175,6 +177,7 @@ def level_boundary_condition_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.level_boundary.add( @@ -246,6 +249,7 @@ def tabulated_rating_curve_control_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.basin.add( @@ -309,6 +313,7 @@ def level_setpoint_with_minmax_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.basin.add( diff --git a/python/ribasim_testmodels/ribasim_testmodels/dutch_waterways.py b/python/ribasim_testmodels/ribasim_testmodels/dutch_waterways.py index fc50e84ec..fd990957b 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/dutch_waterways.py +++ b/python/ribasim_testmodels/ribasim_testmodels/dutch_waterways.py @@ -21,6 +21,7 @@ def dutch_waterways_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) profile_level = np.array([1.86, 3.21, 4.91, 6.61, 8.31, 10.07, 10.17, 10.27, 11.61, 12.94, 13.05, 13.69, 14.32, 14.96, 15.59]) # fmt: skip @@ -45,30 +46,33 @@ def dutch_waterways_model() -> Model: a = 800 - b flow_rate = a * flow_rate + b - # TODO use EPSG:28992 and apply 405 - y to the y coordinates model.flow_boundary.add( - Node(1, Point(1310, 312)), + Node(1, Point(196212, 436220)), [flow_boundary.Time(time=time, flow_rate=flow_rate)], ) model.basin.add( - Node(2, Point(1281, 278), name="IJsselkop"), + Node(2, Point(194292, 439828), name="IJsselkop"), [basin.State(level=[8.31]), basin_profile], ) - model.linear_resistance.add(Node(3, Point(1283, 183)), linear_resistance_shared) - model.linear_resistance.add(Node(4, Point(1220, 186)), linear_resistance_shared) + model.linear_resistance.add( + Node(3, Point(195237, 442337)), linear_resistance_shared + ) + model.linear_resistance.add( + Node(4, Point(187489, 442384)), linear_resistance_shared + ) model.basin.add( - Node(5, Point(1342, 162), name="IJssel Westervoort"), + Node(5, Point(199198, 445557), name="IJssel Westervoort"), [basin.State(level=[7.5]), basin_profile], ) model.basin.add( - Node(6, Point(1134, 184), name="Nederrijn Arnhem"), + Node(6, Point(184906, 441999), name="Nederrijn Arnhem"), [basin.State(level=[7.5]), basin_profile], ) model.level_boundary.add( - Node(7, Point(1383, 121)), [level_boundary.Static(level=[3.0])] + Node(7, Point(208272, 454422)), [level_boundary.Static(level=[3.0])] ) model.tabulated_rating_curve.add( - Node(8, Point(1052, 201), name="Driel open"), + Node(8, Point(183819, 442076), name="Driel open"), [ tabulated_rating_curve.Static( control_state=["pump_low", "pump_high", "rating_curve", "rating_curve"], @@ -81,7 +85,7 @@ def dutch_waterways_model() -> Model: ], ) model.pump.add( - Node(9, Point(1043, 188), name="Driel gecontroleerd"), + Node(9, Point(183859, 441561), name="Driel gecontroleerd"), [ pump.Static( active=[True, True, False], @@ -91,29 +95,31 @@ def dutch_waterways_model() -> Model: ], ) model.basin.add( - Node(10, Point(920, 197)), [basin.State(level=[7.0]), basin_profile] + Node(10, Point(178532, 442187)), [basin.State(level=[7.0]), basin_profile] + ) + model.linear_resistance.add( + Node(11, Point(170775, 439396)), linear_resistance_shared ) - model.linear_resistance.add(Node(11, Point(783, 237)), linear_resistance_shared) model.basin.add( - Node(12, Point(609, 186)), [basin.State(level=[6.0]), basin_profile] + Node(12, Point(162995, 443270)), [basin.State(level=[6.0]), basin_profile] ) model.tabulated_rating_curve.add( - Node(13, Point(430, 176), name="Amerongen open"), + Node(13, Point(156421, 443460), name="Amerongen open"), [tabulated_rating_curve.Static(level=[4.45, 4.46], flow_rate=[418, 420.15])], ) model.pump.add( - Node(14, Point(442, 164), name="Amerongen gecontroleerd"), + Node(14, Point(156882, 441920), name="Amerongen gecontroleerd"), [pump.Static(flow_rate=[1.0], min_flow_rate=0.0, max_flow_rate=50.0)], ) model.basin.add( - Node(15, Point(369, 185)), [basin.State(level=[5.5]), basin_profile] + Node(15, Point(154547, 442540)), [basin.State(level=[5.5]), basin_profile] ) model.level_boundary.add( - Node(16, Point(329, 202), name="Kruising ARK"), + Node(16, Point(151776, 441465), name="Kruising ARK"), [level_boundary.Static(level=[3.0])], ) model.discrete_control.add( - Node(17, Point(1187, 276), name="Controller Driel"), + Node(17, Point(183612, 441833), name="Controller Driel"), [ discrete_control.Condition( listen_node_type="FlowBoundary", @@ -133,10 +139,14 @@ def dutch_waterways_model() -> Model: ), ], ) - model.linear_resistance.add(Node(18, Point(1362, 142)), linear_resistance_shared) - model.linear_resistance.add(Node(19, Point(349, 194)), linear_resistance_shared) + model.linear_resistance.add( + Node(18, Point(201507, 447443)), linear_resistance_shared + ) + model.linear_resistance.add( + Node(19, Point(153039, 442444)), linear_resistance_shared + ) model.pid_control.add( - Node(20, Point(511, 126), name="Controller Amerongen"), + Node(20, Point(155961, 442714), name="Controller Amerongen"), [ pid_control.Static( listen_node_type="Basin", diff --git a/python/ribasim_testmodels/ribasim_testmodels/equations.py b/python/ribasim_testmodels/ribasim_testmodels/equations.py index 47f439f1d..9ffe4c715 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/equations.py +++ b/python/ribasim_testmodels/ribasim_testmodels/equations.py @@ -24,6 +24,7 @@ def linear_resistance_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.basin.add( @@ -54,6 +55,7 @@ def rating_curve_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.basin.add( @@ -92,6 +94,7 @@ def manning_resistance_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) basin_profile = basin.Profile(area=[0.01, 100.0, 100.0], level=[0.0, 1.0, 2.0]) @@ -125,6 +128,7 @@ def misc_nodes_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", solver=Solver(dt=24 * 60 * 60, algorithm="Euler"), ) @@ -179,8 +183,7 @@ def pid_control_equation_model() -> Model: """Set up a model with pid control for an analytical solution test""" model = Model( - starttime="2020-01-01", - endtime="2020-01-01 00:05:00", + starttime="2020-01-01", endtime="2020-01-01 00:05:00", crs="EPSG:28992" ) model.basin.add( Node(1, Point(0, 0)), diff --git a/python/ribasim_testmodels/ribasim_testmodels/invalid.py b/python/ribasim_testmodels/ribasim_testmodels/invalid.py index 4eb92ed8d..906a7b485 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/invalid.py +++ b/python/ribasim_testmodels/ribasim_testmodels/invalid.py @@ -19,6 +19,7 @@ def invalid_qh_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-12-01", + crs="EPSG:28992", ) model.tabulated_rating_curve.add( @@ -55,6 +56,7 @@ def invalid_fractional_flow_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-12-01", + crs="EPSG:28992", ) basin_shared: list[TableModel[Any]] = [ @@ -118,6 +120,7 @@ def invalid_discrete_control_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-12-01", + crs="EPSG:28992", ) basin_shared: list[TableModel[Any]] = [ @@ -187,6 +190,7 @@ def invalid_edge_types_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-12-01", + crs="EPSG:28992", ) basin_shared: list[TableModel[Any]] = [ diff --git a/python/ribasim_testmodels/ribasim_testmodels/pid_control.py b/python/ribasim_testmodels/ribasim_testmodels/pid_control.py index 803d2872f..d8c591c09 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/pid_control.py +++ b/python/ribasim_testmodels/ribasim_testmodels/pid_control.py @@ -19,6 +19,7 @@ def pid_control_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-12-01", + crs="EPSG:28992", ) model.flow_boundary.add( @@ -92,6 +93,7 @@ def discrete_control_of_pid_control_model() -> Model: model = Model( starttime="2020-01-01", endtime="2020-12-01", + crs="EPSG:28992", ) model.level_boundary.add( diff --git a/python/ribasim_testmodels/ribasim_testmodels/time.py b/python/ribasim_testmodels/ribasim_testmodels/time.py index 4ccc0996a..64e006d8a 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/time.py +++ b/python/ribasim_testmodels/ribasim_testmodels/time.py @@ -12,6 +12,7 @@ def flow_boundary_time_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", ) model.flow_boundary.add( diff --git a/python/ribasim_testmodels/ribasim_testmodels/trivial.py b/python/ribasim_testmodels/ribasim_testmodels/trivial.py index 177d2725e..ad3669eb3 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/trivial.py +++ b/python/ribasim_testmodels/ribasim_testmodels/trivial.py @@ -10,6 +10,7 @@ def trivial_model() -> Model: model = Model( starttime="2020-01-01", endtime="2021-01-01", + crs="EPSG:28992", results=Results(subgrid=True, compression=False), ) diff --git a/python/ribasim_testmodels/ribasim_testmodels/two_basin.py b/python/ribasim_testmodels/ribasim_testmodels/two_basin.py index 7ba030edb..9cedb312f 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/two_basin.py +++ b/python/ribasim_testmodels/ribasim_testmodels/two_basin.py @@ -19,7 +19,7 @@ def two_basin_model() -> Model: The right basin fills up and discharges over the rating curve. """ - model = Model(starttime="2020-01-01", endtime="2021-01-01") + model = Model(starttime="2020-01-01", endtime="2021-01-01", crs="EPSG:28992") model.flow_boundary.add( Node(1, Point(0, 0)), [flow_boundary.Static(flow_rate=[1e-2])] From 9b2a3bf9a5e9a8a3364ddf5fdb645819a6b86cef Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 4 Apr 2024 21:00:44 +0200 Subject: [PATCH 031/158] Disallow LevelBoundary next to ManningResistance (#1352) Fixes https://github.com/Deltares/Ribasim/issues/1299. --- core/src/solve.jl | 3 ++- core/src/util.jl | 17 ------------- core/src/validation.jl | 4 ++-- core/test/run_models_test.jl | 4 ++-- core/test/utils_test.jl | 24 ------------------- .../ribasim_testmodels/backwater.py | 8 +++---- 6 files changed, 10 insertions(+), 50 deletions(-) diff --git a/core/src/solve.jl b/core/src/solve.jl index 214e4660e..1ce7eac31 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -444,7 +444,8 @@ function formulate_flow!( h_a = get_level(p, basin_a_id, t; storage) h_b = get_level(p, basin_b_id, t; storage) - bottom_a, bottom_b = basin_bottoms(basin, basin_a_id, basin_b_id, id) + bottom_a = basin_bottom(basin, basin_a_id) + bottom_b = basin_bottom(basin, basin_b_id) slope = profile_slope[i] width = profile_width[i] n = manning_n[i] diff --git a/core/src/util.jl b/core/src/util.jl index b7d5b8e5c..bdf2c4ea8 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -411,23 +411,6 @@ function basin_bottom(basin::Basin, node_id::NodeID)::Union{Float64, Nothing} end end -"Get the bottom on both ends of a node. If only one has a bottom, use that for both." -function basin_bottoms( - basin::Basin, - basin_a_id::NodeID, - basin_b_id::NodeID, - id::NodeID, -)::Tuple{Float64, Float64} - bottom_a = basin_bottom(basin, basin_a_id) - bottom_b = basin_bottom(basin, basin_b_id) - if bottom_a === bottom_b === nothing - error(lazy"No bottom defined on either side of $id") - end - bottom_a = something(bottom_a, bottom_b) - bottom_b = something(bottom_b, bottom_a) - return bottom_a, bottom_b -end - """ Replace the truth states in the logic mapping which contain wildcards with all possible explicit truth states. diff --git a/core/src/validation.jl b/core/src/validation.jl index 7a47141b1..202eec6a8 100644 --- a/core/src/validation.jl +++ b/core/src/validation.jl @@ -18,9 +18,9 @@ neighbortypes(::Val{:fractional_flow}) = Set((:basin, :terminal, :level_boundary neighbortypes(::Val{:flow_boundary}) = Set((:basin, :fractional_flow, :terminal, :level_boundary)) neighbortypes(::Val{:level_boundary}) = - Set((:linear_resistance, :manning_resistance, :pump, :outlet, :tabulated_rating_curve)) + Set((:linear_resistance, :pump, :outlet, :tabulated_rating_curve)) neighbortypes(::Val{:linear_resistance}) = Set((:basin, :level_boundary)) -neighbortypes(::Val{:manning_resistance}) = Set((:basin, :level_boundary)) +neighbortypes(::Val{:manning_resistance}) = Set((:basin,)) neighbortypes(::Val{:discrete_control}) = Set(( :pump, :outlet, diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index 8a24a0a6f..63df14e59 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -480,7 +480,7 @@ end u = model.integrator.sol.u[end] p = model.integrator.p - h_actual = get_tmp(p.basin.current_level, u) + h_actual = get_tmp(p.basin.current_level, u)[1:50] x = collect(10.0:20.0:990.0) h_expected = standard_step_method(x, 5.0, 1.0, 0.04, h_actual[end], 1.0e-6) @@ -496,7 +496,7 @@ end @test Ribasim.get_flow( p.graph, NodeID(:ManningResistance, 101), - NodeID(:LevelBoundary, 102), + NodeID(:Basin, 102), 0, ) ≈ 5.0 atol = 0.001 skip = Sys.isapple() end diff --git a/core/test/utils_test.jl b/core/test/utils_test.jl index 822164322..74203eb6a 100644 --- a/core/test/utils_test.jl +++ b/core/test/utils_test.jl @@ -56,30 +56,6 @@ end @test Ribasim.basin_bottom(basin, NodeID(:Basin, 5)) === 0.0 @test Ribasim.basin_bottom(basin, NodeID(:Basin, 7)) === 4.0 @test Ribasim.basin_bottom(basin, NodeID(:Basin, 6)) === nothing - @test Ribasim.basin_bottoms( - basin, - NodeID(:Basin, 5), - NodeID(:Basin, 7), - NodeID(:Pump, 6), - ) === (0.0, 4.0) - @test Ribasim.basin_bottoms( - basin, - NodeID(:Basin, 5), - NodeID(:Basin, 0), - NodeID(:Pump, 6), - ) === (0.0, 0.0) - @test Ribasim.basin_bottoms( - basin, - NodeID(:Basin, 0), - NodeID(:Basin, 7), - NodeID(:Pump, 6), - ) === (4.0, 4.0) - @test_throws "No bottom defined on either side of Pump #6" Ribasim.basin_bottoms( - basin, - NodeID(:Basin, 0), - NodeID(:Basin, 1), - NodeID(:Pump, 6), - ) end @testitem "Convert levels to storages" begin diff --git a/python/ribasim_testmodels/ribasim_testmodels/backwater.py b/python/ribasim_testmodels/ribasim_testmodels/backwater.py index 0a70a3fbb..04b79a550 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/backwater.py +++ b/python/ribasim_testmodels/ribasim_testmodels/backwater.py @@ -4,7 +4,6 @@ from ribasim.nodes import ( basin, flow_boundary, - level_boundary, manning_resistance, ) from shapely.geometry import Point @@ -68,12 +67,13 @@ def backwater_model(): model.manning_resistance[id + 1], ) - model.level_boundary.add( - Node(102, Point(1010.0, 0.0)), [level_boundary.Static(level=[2.0])] + model.basin.add( + Node(102, Point(1010.0, 0.0)), + [basin.State(level=[2.0]), basin.Profile(level=[0.0, 1.0], area=1e20)], ) model.edge.add( model.manning_resistance[101], - model.level_boundary[102], + model.basin[102], ) return model From 89b45257459e59a63507d451abbe02f580dc8efe Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 4 Apr 2024 21:02:44 +0200 Subject: [PATCH 032/158] Fix node ID bug in allocation (#1330) Fixes https://github.com/Deltares/Ribasim/issues/1262. --- core/src/allocation_init.jl | 25 ++++++++++++++----------- core/src/allocation_optim.jl | 5 +---- core/src/callback.jl | 5 ++++- core/src/parameter.jl | 2 +- 4 files changed, 20 insertions(+), 17 deletions(-) diff --git a/core/src/allocation_init.jl b/core/src/allocation_init.jl index f32a6855d..d17ffc094 100644 --- a/core/src/allocation_init.jl +++ b/core/src/allocation_init.jl @@ -108,11 +108,15 @@ This loop finds allocation network edges in several ways: function find_allocation_graph_edges!( p::Parameters, allocation_network_id::Int32, -)::Tuple{Vector{Vector{NodeID}}, SparseMatrixCSC{Float64, Int}} +)::Tuple{ + Vector{Vector{NodeID}}, + JuMP.Containers.SparseAxisArray{Float64, 2, Tuple{NodeID, NodeID}}, +} (; graph) = p edges_composite = Vector{NodeID}[] - capacity = spzeros(nv(graph), nv(graph)) + dict = Dict{Tuple{NodeID, NodeID}, Float64}() + capacity = JuMP.Containers.SparseAxisArray(dict) node_ids = graph[].node_ids[allocation_network_id] edge_ids = Set{Tuple{NodeID, NodeID}}() @@ -199,11 +203,11 @@ For the composite allocation network edges: - Find out their allowed flow direction(s) """ function process_allocation_graph_edges!( - capacity::SparseMatrixCSC{Float64, Int}, + capacity::JuMP.Containers.SparseAxisArray{Float64, 2, Tuple{NodeID, NodeID}}, edges_composite::Vector{Vector{NodeID}}, p::Parameters, allocation_network_id::Int32, -)::SparseMatrixCSC{Float64, Int} +)::Nothing (; graph) = p node_ids = graph[].node_ids[allocation_network_id] edge_ids = graph[].edge_ids[allocation_network_id] @@ -289,7 +293,7 @@ function process_allocation_graph_edges!( push!(edge_ids, (node_id_2, node_id_1)) end end - return capacity + return nothing end const allocation_source_nodetypes = @@ -320,7 +324,7 @@ Build the graph used for the allocation problem. function allocation_graph( p::Parameters, allocation_network_id::Int32, -)::SparseMatrixCSC{Float64, Int} +)::JuMP.Containers.SparseAxisArray{Float64, 2, Tuple{NodeID, NodeID}} # Find out which nodes in the subnetwork are used in the allocation network allocation_graph_used_nodes!(p, allocation_network_id) @@ -460,17 +464,16 @@ flow over edge <= edge capacity """ function add_constraints_capacity!( problem::JuMP.Model, - capacity::SparseMatrixCSC{Float64, Int}, + capacity::JuMP.Containers.SparseAxisArray{Float64, 2, Tuple{NodeID, NodeID}}, p::Parameters, allocation_network_id::Int32, )::Nothing (; graph) = p main_network_source_edges = get_main_network_connections(p, allocation_network_id) F = problem[:F] - edge_ids = graph[].edge_ids[allocation_network_id] edge_ids_finite_capacity = Tuple{NodeID, NodeID}[] - for edge in edge_ids - if !isinf(capacity[edge...]) && edge ∉ main_network_source_edges + for (edge, c) in capacity.data + if !isinf(c) && edge ∉ main_network_source_edges push!(edge_ids_finite_capacity, edge) end end @@ -909,7 +912,7 @@ Construct the allocation problem for the current subnetwork as a JuMP.jl model. """ function allocation_problem( p::Parameters, - capacity::SparseMatrixCSC{Float64, Int}, + capacity::JuMP.Containers.SparseAxisArray{Float64, 2, Tuple{NodeID, NodeID}}, allocation_network_id::Int32, )::JuMP.Model optimizer = JuMP.optimizer_with_attributes(HiGHS.Optimizer, "log_to_console" => false) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 5965298ea..1fb5f8d3e 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -298,14 +298,11 @@ function set_initial_capacities_edge!( allocation_model::AllocationModel, p::Parameters, )::Nothing - (; graph) = p (; problem, capacity, allocation_network_id) = allocation_model - edge_ids = graph[].edge_ids[allocation_network_id] constraints_capacity = problem[:capacity] main_network_source_edges = get_main_network_connections(p, allocation_network_id) - for edge_id in edge_ids - c = capacity[edge_id...] + for (edge_id, c) in capacity.data # These edges have no capacity constraints: # - With infinite capacity diff --git a/core/src/callback.jl b/core/src/callback.jl index 77fd2e896..4662ab891 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -199,7 +199,10 @@ function get_value( if variable == "level" if node_id.type == NodeType.Basin - _, basin_idx = id_index(basin.node_id, node_id) + has_index, basin_idx = id_index(basin.node_id, node_id) + if !has_index + error("Discrete control listen node $node_id does not exist.") + end _, level = get_area_and_level(basin, basin_idx, u[basin_idx]) elseif node_id.type == NodeType.LevelBoundary level_boundary_idx = findsorted(level_boundary.node_id, node_id) diff --git a/core/src/parameter.jl b/core/src/parameter.jl index c5a8995e8..c7978d273 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -50,7 +50,7 @@ problem: The JuMP.jl model for solving the allocation problem """ struct AllocationModel allocation_network_id::Int32 - capacity::SparseMatrixCSC{Float64, Int} + capacity::JuMP.Containers.SparseAxisArray{Float64, 2, Tuple{NodeID, NodeID}} problem::JuMP.Model Δt_allocation::Float64 end From 17d1fea97c8b22eb9d839bb17559156d34847bb9 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 4 Apr 2024 21:08:46 +0200 Subject: [PATCH 033/158] make demand, allocated matrices and index these directly (#1353) Fixes https://github.com/Deltares/Ribasim/issues/1277 --- core/src/allocation_optim.jl | 26 ++++++++++----------- core/src/parameter.jl | 6 ++--- core/src/read.jl | 15 ++++++------ core/src/solve.jl | 9 ++++---- core/src/util.jl | 44 ------------------------------------ core/test/allocation_test.jl | 20 ++++++---------- 6 files changed, 35 insertions(+), 85 deletions(-) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 1fb5f8d3e..2de42ce63 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -78,7 +78,7 @@ function set_objective_priority!( )::Nothing (; problem, allocation_network_id) = allocation_model (; graph, user_demand, flow_demand, allocation, basin) = p - (; node_id) = user_demand + (; node_id, demand_reduced) = user_demand (; main_network_connections, subnetwork_demands) = allocation edge_ids = graph[].edge_ids[allocation_network_id] @@ -114,7 +114,8 @@ function set_objective_priority!( if to_node_id.type == NodeType.UserDemand # UserDemand - d = get_user_demand(p, to_node_id, priority_idx) + user_demand_idx = findsorted(node_id, to_node_id) + d = demand_reduced[user_demand_idx, priority_idx] add_user_demand_term!(edge_id, d, problem) else has_demand, demand_node_id = @@ -183,7 +184,7 @@ function assign_allocations!( if user_demand_node_id.type == NodeType.UserDemand allocated = JuMP.value(F[edge_id]) user_demand_idx = findsorted(user_demand.node_id, user_demand_node_id) - user_demand.allocated[user_demand_idx][priority_idx] = allocated + user_demand.allocated[user_demand_idx, priority_idx] = allocated end end end @@ -481,7 +482,7 @@ function set_initial_demands_user!( )::Nothing (; allocation_network_id) = allocation_model (; graph, user_demand, allocation) = p - (; node_id, demand_from_timeseries, demand_itp) = user_demand + (; node_id, demand_from_timeseries, demand_itp, demand, demand_reduced) = user_demand # Read the demand from the interpolated timeseries # for users for which the demand comes from there @@ -489,12 +490,11 @@ function set_initial_demands_user!( if demand_from_timeseries[i] && graph[id].allocation_network_id == allocation_network_id for priority_idx in eachindex(allocation.priorities) - d = demand_itp[i][priority_idx](t) - set_user_demand!(p, id, priority_idx, d; reduced = false) + demand[i, priority_idx] = demand_itp[i][priority_idx](t) end end end - copy!(user_demand.demand_reduced, user_demand.demand) + copy!(demand_reduced, demand) return nothing end @@ -576,17 +576,17 @@ function adjust_demands_user!( )::Nothing (; problem, allocation_network_id) = allocation_model (; graph, user_demand) = p + (; node_id, demand_reduced) = user_demand F = problem[:F] # Reduce the demand by what was allocated - for id in user_demand.node_id + for (i, id) in enumerate(node_id) if graph[id].allocation_network_id == allocation_network_id d = max( 0.0, - get_user_demand(p, id, priority_idx) - - JuMP.value(F[(inflow_id(graph, id), id)]), + demand_reduced[i, priority_idx] - JuMP.value(F[(inflow_id(graph, id), id)]), ) - set_user_demand!(p, id, priority_idx, d) + demand_reduced[i, priority_idx] = d end end return nothing @@ -755,8 +755,8 @@ function save_demands_and_allocations!( if node_id.type == NodeType.UserDemand has_demand = true user_demand_idx = findsorted(user_demand.node_id, node_id) - demand = get_user_demand(p, node_id, priority_idx; reduced = false) - allocated = user_demand.allocated[user_demand_idx][priority_idx] + demand = user_demand.demand[user_demand_idx, priority_idx] + allocated = user_demand.allocated[user_demand_idx, priority_idx] #NOTE: instantaneous realized = get_flow(graph, inflow_id(graph, node_id), node_id, 0) diff --git a/core/src/parameter.jl b/core/src/parameter.jl index c7978d273..26540502d 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -496,11 +496,11 @@ struct UserDemand <: AbstractParameterNode node_id::Vector{NodeID} active::BitVector realized_bmi::Vector{Float64} - demand::Vector{Float64} - demand_reduced::Vector{Float64} + demand::Matrix{Float64} + demand_reduced::Matrix{Float64} demand_itp::Vector{Vector{ScalarInterpolation}} demand_from_timeseries::BitVector - allocated::Vector{Vector{Float64}} + allocated::Matrix{Float64} return_factor::Vector{Float64} min_level::Vector{Float64} diff --git a/core/src/read.jl b/core/src/read.jl index dcda5a69b..9191b1cbc 100644 --- a/core/src/read.jl +++ b/core/src/read.jl @@ -652,7 +652,7 @@ end function user_demand_static!( active::BitVector, - demand::Vector{Float64}, + demand::Matrix{Float64}, demand_itp::Vector{Vector{ScalarInterpolation}}, return_factor::Vector{Float64}, min_level::Vector{Float64}, @@ -672,7 +672,7 @@ function user_demand_static!( for row in group priority_idx = findsorted(priorities, row.priority) demand_itp[user_demand_idx][priority_idx].u .= row.demand - demand[(user_demand_idx - 1) * length(priorities) + priority_idx] = row.demand + demand[user_demand_idx, priority_idx] = row.demand end end return nothing @@ -680,7 +680,7 @@ end function user_demand_time!( active::BitVector, - demand::Vector{Float64}, + demand::Matrix{Float64}, demand_itp::Vector{Vector{ScalarInterpolation}}, demand_from_timeseries::BitVector, return_factor::Vector{Float64}, @@ -712,8 +712,7 @@ function user_demand_time!( :demand; default_value = 0.0, ) - demand[(user_demand_idx - 1) * length(priorities) + priority_idx] = - demand_p_itp(0.0) + demand[user_demand_idx, priority_idx] = demand_p_itp(0.0) if is_valid demand_itp[user_demand_idx][priority_idx] = demand_p_itp @@ -741,14 +740,14 @@ function UserDemand(db::DB, config::Config)::UserDemand n_priority = length(priorities) active = BitVector(ones(Bool, n_user)) realized_bmi = zeros(n_user) - demand = zeros(n_user * n_priority) - demand_reduced = zeros(n_user * n_priority) + demand = zeros(n_user, n_priority) + demand_reduced = zeros(n_user, n_priority) trivial_timespan = [nextfloat(-Inf), prevfloat(Inf)] demand_itp = [ [LinearInterpolation(zeros(2), trivial_timespan) for i in eachindex(priorities)] for j in eachindex(node_ids) ] demand_from_timeseries = BitVector(zeros(Bool, n_user)) - allocated = [fill(Inf, length(priorities)) for id in node_ids] + allocated = fill(Inf, n_user, n_priority) return_factor = zeros(n_user) min_level = zeros(n_user) diff --git a/core/src/solve.jl b/core/src/solve.jl index 1ce7eac31..a6b3cd791 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -266,12 +266,13 @@ function formulate_flow!( storage::AbstractVector, t::Number, )::Nothing - (; graph, basin) = p + (; graph, basin, allocation) = p (; node_id, allocated, active, demand_itp, + demand, return_factor, min_level, demand_from_timeseries, @@ -291,12 +292,12 @@ function formulate_flow!( # and the current demand. # If allocation is not optimized then allocated = Inf, so the result is always # effectively allocated = demand. - for priority_idx in eachindex(allocated[i]) - alloc_prio = allocated[i][priority_idx] + for priority_idx in eachindex(allocation.priorities) + alloc_prio = allocated[i, priority_idx] demand_prio = if demand_from_timeseries[i] demand_itp[i][priority_idx](t) else - get_user_demand(p, id, priority_idx; reduced = false) + demand[i, priority_idx] end alloc = min(alloc_prio, demand_prio) q += alloc diff --git a/core/src/util.jl b/core/src/util.jl index bdf2c4ea8..6f4a88f0c 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -583,50 +583,6 @@ function is_main_network(allocation_network_id::Int32)::Bool return allocation_network_id == 1 end -function get_user_demand( - p::Parameters, - node_id::NodeID, - priority_idx::Int; - reduced::Bool = true, -)::Float64 - (; user_demand, allocation) = p - (; demand, demand_reduced) = user_demand - user_demand_idx = findsorted(user_demand.node_id, node_id) - n_priorities = length(allocation.priorities) - idx = (user_demand_idx - 1) * n_priorities + priority_idx - - if reduced - @assert is_active(allocation) "reduced demand accessed in non-allocation run" - return demand_reduced[idx] - else - return demand[idx] - end -end - -function set_user_demand!( - p::Parameters, - node_id::NodeID, - priority_idx::Int, - value::Float64; - reduced::Bool = true, -)::Nothing - (; user_demand, allocation) = p - (; demand, demand_reduced) = user_demand - - user_demand_idx = findsorted(user_demand.node_id, node_id) - n_priorities = length(allocation.priorities) - idx = (user_demand_idx - 1) * n_priorities + priority_idx - - if reduced - @assert is_active(allocation) "reduced demand accessed in non-allocation run" - demand_reduced[idx] = value - else - demand[idx] = value - end - - return nothing -end - function get_all_priorities(db::DB, config::Config)::Vector{Int32} priorities = Set{Int32}() diff --git a/core/test/allocation_test.jl b/core/test/allocation_test.jl index 80253447b..7f563739d 100644 --- a/core/test/allocation_test.jl +++ b/core/test/allocation_test.jl @@ -38,16 +38,10 @@ @test JuMP.value(F[(NodeID(:FlowBoundary, 1), NodeID(:Basin, 2))]) ≈ 0.5 @test JuMP.value(F[(NodeID(:Basin, 6), NodeID(:UserDemand, 11))]) ≈ 0.0 - allocated = p.user_demand.allocated - @test allocated[1] ≈ [0.0, 0.5] - @test allocated[2] ≈ [4.0, 0.0] - @test allocated[3] ≈ [0.0, 2.0] - - # Test getting and setting UserDemand demands - (; user_demand) = p - Ribasim.set_user_demand!(p, NodeID(:UserDemand, 11), 2, Float64(π); reduced = false) - @test user_demand.demand[4] ≈ π - @test Ribasim.get_user_demand(p, NodeID(:UserDemand, 11), 2; reduced = false) ≈ π + (; allocated) = p.user_demand + @test allocated[1, :] ≈ [0.0, 0.5] + @test allocated[2, :] ≈ [4.0, 0.0] + @test allocated[3, :] ≈ [0.0, 2.0] end @testitem "Allocation objective: linear absolute" begin @@ -197,7 +191,7 @@ end [(NodeID(:Basin, 10), NodeID(:Pump, 38))] end -@testitem "allocation with main network optimization problem" begin +@testitem "Allocation with main network optimization problem" begin using SQLite using Ribasim: NodeID, OptimizationType using ComponentArrays: ComponentVector @@ -255,8 +249,8 @@ end [0.00399999999, 0.0, 0.0] @test subnetwork_allocateds[NodeID(:Basin, 10), NodeID(:Pump, 38)] ≈ [0.001, 0.0, 0.0] - @test user_demand.allocated[2] ≈ [4.0, 0.0, 0.0] - @test user_demand.allocated[7] ≈ [0.001, 0.0, 0.0] + @test user_demand.allocated[2, :] ≈ [4.0, 0.0, 0.0] + @test user_demand.allocated[7, :] ≈ [0.001, 0.0, 0.0] end @testitem "subnetworks with sources" begin From 5d2bbeffa046ab4f824a8a70ada7ec8f2d316f95 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 4 Apr 2024 21:18:39 +0200 Subject: [PATCH 034/158] Fix allocation flow output (#1355) Fixes https://github.com/Deltares/Ribasim/issues/1206. --------- Co-authored-by: Martijn Visser --- core/src/allocation_optim.jl | 40 ++++++++++++++++++++++++++++++------ core/test/allocation_test.jl | 14 ++++++++++++- 2 files changed, 47 insertions(+), 7 deletions(-) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 2de42ce63..b42393f75 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -837,23 +837,51 @@ function save_allocation_flows!( F_basin_out = problem[:F_basin_out] # Edge flows - for allocation_edge in first(F.axes) + allocation_edge_idx = 1 + allocation_edges = first(F.axes) + n_allocation_edges = length(allocation_edges) + + while allocation_edge_idx <= n_allocation_edges + allocation_edge = allocation_edges[allocation_edge_idx] flow_rate = JuMP.value(F[allocation_edge]) + + # Check whether the next allocation edge is the reverse of the current + # allocation edge + if allocation_edge_idx < n_allocation_edges && + allocation_edges[allocation_edge_idx + 1] == reverse(allocation_edge) + # Combine the flow rates of bidirectional allocation edges + allocation_edge_idx += 1 + flow_rate -= JuMP.value(F[allocation_edges[allocation_edge_idx]]) + end + edge_metadata = graph[allocation_edge...] (; node_ids) = edge_metadata for i in eachindex(node_ids)[1:(end - 1)] + # Check in which direction this edge in the physical layer exists + if haskey(graph, node_ids[i], node_ids[i + 1]) + id_from = node_ids[i] + id_to = node_ids[i + 1] + flow_rate_signed = flow_rate + else + id_from = node_ids[i + 1] + id_to = node_ids[i] + flow_rate_signed = -flow_rate + end + push!(record_flow.time, t) push!(record_flow.edge_id, edge_metadata.id) - push!(record_flow.from_node_type, string(node_ids[i].type)) - push!(record_flow.from_node_id, Int32(node_ids[i])) - push!(record_flow.to_node_type, string(node_ids[i + 1].type)) - push!(record_flow.to_node_id, Int32(node_ids[i + 1])) + push!(record_flow.from_node_type, string(id_from.type)) + push!(record_flow.from_node_id, Int32(id_from)) + push!(record_flow.to_node_type, string(id_to.type)) + push!(record_flow.to_node_id, Int32(id_to)) push!(record_flow.subnetwork_id, allocation_network_id) push!(record_flow.priority, priority) - push!(record_flow.flow_rate, flow_rate) + push!(record_flow.flow_rate, flow_rate_signed) push!(record_flow.optimization_type, string(optimization_type)) end + + allocation_edge_idx += 1 end # Basin flows diff --git a/core/test/allocation_test.jl b/core/test/allocation_test.jl index 7f563739d..d804d8020 100644 --- a/core/test/allocation_test.jl +++ b/core/test/allocation_test.jl @@ -196,6 +196,7 @@ end using Ribasim: NodeID, OptimizationType using ComponentArrays: ComponentVector using JuMP + using DataFrames: DataFrame, ByRow, transform! toml_path = normpath( @__DIR__, @@ -209,7 +210,8 @@ end close(db) (; allocation, user_demand, graph, basin) = p - (; allocation_models, subnetwork_demands, subnetwork_allocateds) = allocation + (; allocation_models, subnetwork_demands, subnetwork_allocateds, record_flow) = + allocation t = 0.0 # Collecting demands @@ -249,6 +251,16 @@ end [0.00399999999, 0.0, 0.0] @test subnetwork_allocateds[NodeID(:Basin, 10), NodeID(:Pump, 38)] ≈ [0.001, 0.0, 0.0] + # Test for existence of edges in allocation flow record + allocation_flow = DataFrame(record_flow) + transform!( + allocation_flow, + [:from_node_type, :from_node_id, :to_node_type, :to_node_id] => + ByRow((a, b, c, d) -> haskey(graph, NodeID(a, b), NodeID(c, d))) => + :edge_exists, + ) + @test all(allocation_flow.edge_exists) + @test user_demand.allocated[2, :] ≈ [4.0, 0.0, 0.0] @test user_demand.allocated[7, :] ≈ [0.001, 0.0, 0.0] end From 6f6d88eb75ca57ca79325270f6b2acda71b81340 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 8 Apr 2024 08:59:23 +0200 Subject: [PATCH 035/158] Bump julia-actions/setup-julia from 1 to 2 (#1361) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Bumps [julia-actions/setup-julia](https://github.com/julia-actions/setup-julia) from 1 to 2.
Release notes

Sourced from julia-actions/setup-julia's releases.

v2.0.0 - Update to Node20

What's Changed

Note the rationale for the breaking change was discussed in julia-actions/setup-julia#209

Dependencies and misc

New Contributors

Full Changelog: https://github.com/julia-actions/setup-julia/compare/v1.9.6...v2.0.0

v1.9.6: Fix Apple Silicon installation

What's Changed

Deps & CI

New Contributors

Full Changelog: https://github.com/julia-actions/setup-julia/compare/v1.9.5...v1.9.6

v1.9.5: Maintain mtime of julia build to avoid re-precompilation

A big part of fixing JuliaLang/julia#50667 for julia <1.11 as maintaining the mtime of the julia source files means cached /compiled caches won't be invalidated in new runs where julia has been reinstalled.

What's Changed

Dep updates

... (truncated)

Commits
  • f225878 Add production dependencies & build
  • b96a572 Bump the version number to 2.0.0 in package.json and package-lock.json ...
  • 437a175 update to node20 (#209)
  • e9d953d Bump @​types/node from 20.11.16 to 20.11.30 (#226)
  • 4190528 Bump @​types/semver from 7.5.6 to 7.5.8 (#222)
  • 9acd04f Bump nock from 13.5.1 to 13.5.4 (#224)
  • See full diff in compare view

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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/core_compat_helper.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/core_compat_helper.yml b/.github/workflows/core_compat_helper.yml index bd8575361..9c211232d 100644 --- a/.github/workflows/core_compat_helper.yml +++ b/.github/workflows/core_compat_helper.yml @@ -15,7 +15,7 @@ jobs: run: which julia continue-on-error: true - name: Install Julia, but only if it is not already available in the PATH - uses: julia-actions/setup-julia@v1 + uses: julia-actions/setup-julia@v2 with: version: "1" arch: ${{ runner.arch }} From a5ee40fa813674f40d43570e91d078b8c3ef46d4 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Mon, 8 Apr 2024 11:48:23 +0200 Subject: [PATCH 036/158] No need to formulate flow for Terminal anymore (#1357) This was missed from #1300. We don't store vertical flows anymore. Doing this was the only reason for `formulate_flows!` for Terminal nodes. What I don't fully understand is why tests did not fail on this. Any test model with a Terminal should have failed since the 3-arg `add_flow!(graph, id, -q)` it called was removed in #1300. This PR also removes the 4-arg version that is no longer used. --- core/src/graph.jl | 9 --------- core/src/solve.jl | 23 +---------------------- 2 files changed, 1 insertion(+), 31 deletions(-) diff --git a/core/src/graph.jl b/core/src/graph.jl index cb453e88d..344a31484 100644 --- a/core/src/graph.jl +++ b/core/src/graph.jl @@ -179,15 +179,6 @@ function set_flow!(graph::MetaGraph, id_src::NodeID, id_dst::NodeID, q::Number): return nothing end -""" -Add the given flow q to the existing flow over the edge between the given nodes. -""" -function add_flow!(graph::MetaGraph, id_src::NodeID, id_dst::NodeID, q::Number)::Nothing - (; flow_dict, flow) = graph[] - get_tmp(flow, q)[flow_dict[(id_src, id_dst)]] += q - return nothing -end - """ Get the flow over the given edge (val is needed for get_tmp from ForwardDiff.jl). """ diff --git a/core/src/solve.jl b/core/src/solve.jl index a6b3cd791..db5654aac 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -502,24 +502,6 @@ function formulate_flow!( return nothing end -function formulate_flow!( - terminal::Terminal, - p::Parameters, - storage::AbstractVector, - t::Number, -)::Nothing - (; graph) = p - (; node_id) = terminal - - for id in node_id - for upstream_id in inflow_ids(graph, id) - q = get_flow(graph, upstream_id, id, storage) - add_flow!(graph, id, -q) - end - end - return nothing -end - function formulate_flow!( flow_boundary::FlowBoundary, p::Parameters, @@ -637,12 +619,10 @@ function formulate_flows!(p::Parameters, storage::AbstractVector, t::Number)::No manning_resistance, tabulated_rating_curve, flow_boundary, - level_boundary, pump, outlet, user_demand, fractional_flow, - terminal, ) = p formulate_flow!(linear_resistance, p, storage, t) @@ -653,7 +633,6 @@ function formulate_flows!(p::Parameters, storage::AbstractVector, t::Number)::No formulate_flow!(outlet, p, storage, t) formulate_flow!(user_demand, p, storage, t) - # do these last since they rely on formulated input flows + # do this last since they rely on formulated input flows formulate_flow!(fractional_flow, p, storage, t) - formulate_flow!(terminal, p, storage, t) end From f42250ab0ccca2908bbac292525d28eea5733266 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Mon, 8 Apr 2024 12:44:39 +0200 Subject: [PATCH 037/158] Don't add the endtime to basin.arrow results (#1359) This reverts a part of 4ff9987710fac6642d723d97bceb574517b09f24 On Tuesday we discussed the `basin.arrow` with @SouthEndMusic and @Huite. A few issues/PRs will come out of this, but this already removes the endtime, such that we don't have `missing` vertical fluxes in `basin.arrow` anymore. The downside is that the final storage is not currently available, but we have #1358 for that, and plan to add `dS/dt (m3/s)` as well to be able to compute it. --- core/src/write.jl | 25 +++++++++++++------------ core/test/run_models_test.jl | 13 ++----------- core/test/time_test.jl | 14 +++----------- docs/core/usage.qmd | 27 ++++++++++++++------------- 4 files changed, 32 insertions(+), 47 deletions(-) diff --git a/core/src/write.jl b/core/src/write.jl index d54adfc18..66fec8fc2 100644 --- a/core/src/write.jl +++ b/core/src/write.jl @@ -84,26 +84,27 @@ function basin_table( node_id::Vector{Int32}, storage::Vector{Float64}, level::Vector{Float64}, - precipitation::Vector{Union{Missing, Float64}}, - evaporation::Vector{Union{Missing, Float64}}, - drainage::Vector{Union{Missing, Float64}}, - infiltration::Vector{Union{Missing, Float64}}, + precipitation::Vector{Float64}, + evaporation::Vector{Float64}, + drainage::Vector{Float64}, + infiltration::Vector{Float64}, } (; saved) = model (; vertical_flux) = saved + # The last timestep is not included; there is no period over which to compute flows. data = get_storages_and_levels(model) - storage = vec(data.storage) - level = vec(data.level) + storage = vec(data.storage[:, begin:(end - 1)]) + level = vec(data.level[:, begin:(end - 1)]) nbasin = length(data.node_id) - ntsteps = length(data.time) + ntsteps = length(data.time) - 1 nrows = nbasin * ntsteps - precipitation = Vector{Union{Missing, Float64}}(missing, nrows) - evaporation = Vector{Union{Missing, Float64}}(missing, nrows) - drainage = Vector{Union{Missing, Float64}}(missing, nrows) - infiltration = Vector{Union{Missing, Float64}}(missing, nrows) + precipitation = zeros(nrows) + evaporation = zeros(nrows) + drainage = zeros(nrows) + infiltration = zeros(nrows) idx_row = 0 @@ -118,7 +119,7 @@ function basin_table( end end - time = repeat(data.time; inner = nbasin) + time = repeat(data.time[begin:(end - 1)]; inner = nbasin) node_id = repeat(Int32.(data.node_id); outer = ntsteps) return (; diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index 63df14e59..de886783c 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -54,16 +54,7 @@ :drainage, :infiltration, ), - ( - DateTime, - Int32, - Float64, - Float64, - Union{Missing, Float64}, - Union{Missing, Float64}, - Union{Missing, Float64}, - Union{Missing, Float64}, - ), + (DateTime, Int32, Float64, Float64, Float64, Float64, Float64, Float64), ) @test Tables.schema(control) == Tables.Schema( (:time, :control_node_id, :truth_state, :control_state), @@ -108,7 +99,7 @@ @test nsaved > 10 # t0 has no flow, 2 flow edges @test nrow(flow) == (nsaved - 1) * 2 - @test nrow(basin) == nsaved + @test nrow(basin) == nsaved - 1 @test nrow(control) == 0 @test nrow(allocation) == 0 @test nrow(subgrid) == nsaved * length(p.subgrid.level) diff --git a/core/test/time_test.jl b/core/test/time_test.jl index 7977ad705..c45a315fe 100644 --- a/core/test/time_test.jl +++ b/core/test/time_test.jl @@ -34,15 +34,10 @@ end n_basin = length(basin.node_id) basin_table = DataFrame(Ribasim.basin_table(model)) - # No vertical flux data for last saveat - t_end = last(basin_table).time - data_end = filter(:time => t -> t == t_end, basin_table) - @test all(ismissing.(data_end.precipitation)) - @test all(ismissing.(data_end.evaporation)) - @test all(ismissing.(data_end.drainage)) - @test all(ismissing.(data_end.infiltration)) - time_table = DataFrame(basin.time) + t_end = time_table.time[end] + filter!(:time => t -> t !== t_end, time_table) + time_table[!, "basin_idx"] = [ Ribasim.id_index(basin.node_id, node_id)[2] for node_id in Ribasim.NodeID.(:Basin, time_table.node_id) @@ -66,9 +61,6 @@ end end end - filter!(:time => t -> t !== t_end, basin_table) - filter!(:time => t -> t !== t_end, time_table) - @test all( isapprox( basin_table.evaporation, diff --git a/docs/core/usage.qmd b/docs/core/usage.qmd index f8fec8b9c..29e608b7a 100644 --- a/docs/core/usage.qmd +++ b/docs/core/usage.qmd @@ -705,23 +705,24 @@ derivative | Float64 | - | - ## Basin - `basin.arrow` -The basin table contains: +The Basin table contains: -- results of the storage and level of each basin, which are instantaneous values; -- results of the vertical fluxes on each basin, which are mean values over the `saveat` intervals. In the time column the start of the period is indicated. This means that for the final time in the table the mean vertical fluxes are not computed, and thus are `missing`. +- Results of the storage and level of each basin, which are instantaneous values; +- Results of the vertical fluxes on each basin, which are mean values over the `saveat` intervals. In the time column the start of the period is indicated. +- The final state of the model is not part of this file, and will be placed in a separate output state file in the future. The initial condition is also written to the file. -column | type | unit -------------- | ------------------------ | ---- -time | DateTime | - -node_id | Int32 | - -storage | Float64 | $m^3$ -level | Float64 | $m$ -precipitation | Union{Float64, Missing} | $m^3 s^{-1}$ -evaporation | Union{Float64, Missing} | $m^3 s^{-1}$ -drainage | Union{Float64, Missing} | $m^3 s^{-1}$ -infiltration | Union{Float64, Missing} | $m^3 s^{-1}$ +column | type | unit +------------- | ---------| ---- +time | DateTime | - +node_id | Int32 | - +storage | Float64 | $m^3$ +level | Float64 | $m$ +precipitation | Float64 | $m^3 s^{-1}$ +evaporation | Float64 | $m^3 s^{-1}$ +drainage | Float64 | $m^3 s^{-1}$ +infiltration | Float64 | $m^3 s^{-1}$ The table is sorted by time, and per time it is sorted by `node_id`. From 2adaec49de7c10522d44223ecdd4a21fe671786e Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Mon, 8 Apr 2024 15:21:01 +0200 Subject: [PATCH 038/158] Add `Model.to_crs` method in order to reproject (#1360) Fixes #1354 --- python/ribasim/ribasim/model.py | 18 ++++++++++++++---- python/ribasim/tests/conftest.py | 5 +++++ python/ribasim/tests/test_model.py | 11 +++++++++++ .../ribasim_testmodels/bucket.py | 8 ++++---- 4 files changed, 34 insertions(+), 8 deletions(-) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index ccca20892..864d17116 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -161,6 +161,7 @@ def _write_toml(self, fn: Path) -> Path: return fn def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): + # Set CRS of the tables to the CRS stored in the Model object self.set_crs(self.crs) db_path = directory / input_dir / "database.gpkg" db_path.parent.mkdir(parents=True, exist_ok=True) @@ -182,14 +183,23 @@ def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): sub._save(directory, input_dir) def set_crs(self, crs: str) -> None: - self.crs = crs - self.edge.df = self.edge.df.set_crs(crs) + self._apply_crs_function("set_crs", crs) + + def to_crs(self, crs: str) -> None: + # Set CRS of the tables to the CRS stored in the Model object + self.set_crs(self.crs) + self._apply_crs_function("to_crs", crs) + + def _apply_crs_function(self, function_name: str, crs: str) -> None: + """Apply `function_name`, with `crs` as the first and only argument to all spatial tables.""" + self.edge.df = getattr(self.edge.df, function_name)(crs) for sub in self._nodes(): if sub.node.df is not None: - sub.node.df = sub.node.df.set_crs(crs) + sub.node.df = getattr(sub.node.df, function_name)(crs) for table in sub._tables(): if isinstance(table, SpatialTableModel) and table.df is not None: - table.df = table.df.set_crs(crs) + table.df = getattr(table.df, function_name)(crs) + self.crs = crs def node_table(self) -> NodeTable: """Compute the full NodeTable from all node types.""" diff --git a/python/ribasim/tests/conftest.py b/python/ribasim/tests/conftest.py index 2f0f3ae9f..30939e521 100644 --- a/python/ribasim/tests/conftest.py +++ b/python/ribasim/tests/conftest.py @@ -19,6 +19,11 @@ def basic_transient() -> ribasim.Model: return ribasim_testmodels.basic_transient_model() +@pytest.fixture() +def bucket() -> ribasim.Model: + return ribasim_testmodels.bucket_model() + + @pytest.fixture() def tabulated_rating_curve() -> ribasim.Model: return ribasim_testmodels.tabulated_rating_curve_model() diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index 001ab889f..d7311b63d 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -242,3 +242,14 @@ def test_xugrid(basic, tmp_path): uds.ugrid.to_netcdf(tmp_path / "ribasim.nc") uds = xugrid.open_dataset(tmp_path / "ribasim.nc") assert uds.attrs["Conventions"] == "CF-1.9 UGRID-1.0" + + +def test_to_crs(bucket: Model): + model = bucket + + # Reproject to World Geodetic System 1984 + model.to_crs("EPSG:4326") + + # Assert that the bucket is still at Deltares' headquarter + assert model.basin.node.df["geometry"].iloc[0].x == pytest.approx(4.38, abs=0.1) + assert model.basin.node.df["geometry"].iloc[0].y == pytest.approx(51.98, abs=0.1) diff --git a/python/ribasim_testmodels/ribasim_testmodels/bucket.py b/python/ribasim_testmodels/ribasim_testmodels/bucket.py index 66ffe2abb..87fb28e07 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/bucket.py +++ b/python/ribasim_testmodels/ribasim_testmodels/bucket.py @@ -9,7 +9,7 @@ def bucket_model() -> ribasim.Model: - """Bucket model with just a single basin.""" + """Bucket model with just a single basin at Deltares' headquarter.""" model = ribasim.Model( starttime="2020-01-01", @@ -18,7 +18,7 @@ def bucket_model() -> ribasim.Model: ) model.basin.add( - Node(1, Point(400.0, 200.0)), + Node(1, Point(85825.6, 444613.9)), [ basin.Profile( area=[1000.0, 1000.0], @@ -38,7 +38,7 @@ def bucket_model() -> ribasim.Model: def leaky_bucket_model() -> ribasim.Model: - """Bucket model with dynamic forcing with missings.""" + """Bucket model with dynamic forcing with missings at Deltares' headquarter.""" model = ribasim.Model( starttime="2020-01-01", @@ -47,7 +47,7 @@ def leaky_bucket_model() -> ribasim.Model: ) model.basin.add( - Node(1, Point(400.0, 200.0)), + Node(1, Point(85825.6, 444613.9)), [ basin.Profile( area=[1000.0, 1000.0], From ef7b43e9da100861ccf7df51f3e151d26f3ef06e Mon Sep 17 00:00:00 2001 From: Jingru923 <47444880+Jingru923@users.noreply.github.com> Date: Mon, 8 Apr 2024 17:25:44 +0200 Subject: [PATCH 039/158] Guide documentation for cascade polder basins (#1258) Fixes #1017 A example model for a cascade of polder basin with local PID controller was made. Wiki page updated with this guidance document. --- core/src/solve.jl | 6 +- docs/python/examples.ipynb | 431 +++++++++++++++++- docs/python/image/cascade-polder.jpg | Bin 0 -> 123669 bytes .../ribasim_testmodels/__init__.py | 2 + .../ribasim_testmodels/doc_example.py | 178 ++++++++ 5 files changed, 614 insertions(+), 3 deletions(-) create mode 100644 docs/python/image/cascade-polder.jpg create mode 100644 python/ribasim_testmodels/ribasim_testmodels/doc_example.py diff --git a/core/src/solve.jl b/core/src/solve.jl index db5654aac..c23aeb562 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -154,14 +154,16 @@ function continuous_control!( factor_outlet = 1.0 - # No flow of outlet if source level is lower than target level + # No flow out of outlet if source level is lower than reference level if !(src_level === nothing || dst_level === nothing) Δlevel = src_level - dst_level factor_outlet *= reduction_factor(Δlevel, 0.1) end - # No flow out outlet if source level is lower than minimum crest level + # No flow out of outlet if source level is lower than minimum crest level if src_level !== nothing + controlled_node_idx = findsorted(outlet.node_id, controlled_node_id) + factor_outlet *= reduction_factor( src_level - outlet.min_crest_level[controlled_node_idx], 0.1, diff --git a/docs/python/examples.ipynb b/docs/python/examples.ipynb index 27f3e3727..315ce4777 100644 --- a/docs/python/examples.ipynb +++ b/docs/python/examples.ipynb @@ -1677,7 +1677,436 @@ { "cell_type": "markdown", "metadata": {}, - "source": [] + "source": [ + "# Guidance of modelling a cascade of polder basins" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "**Situation description**: This example shows how to make a model for a given practical water system, which consists of a cascade of level control polder basins with inlet and outlet to the main systems. Note that alternative model layouts are feasible for the same water system, each having its positive items and drawbacks." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "![](image/cascade-polder.jpg)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "The polder system is composed of a sequence of level controlled polder basins with weirs inbetween each basin and an inlet and outlet to main system" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "model = Model(starttime=\"2020-01-01\", endtime=\"2021-01-01\", crs=\"EPSG:28992\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "All the polder basins are exposed to time varying forcings (precipitation, evaporation, drainage, infiltration) to mimic situations of water excess and water shortage.\n", + "\n", + "In case of water excess, a pump in the most downstream polder will need to pump the surplus water to the main water system. In case of water shortage, an inlet at the most upstream polder will need to bring water into the cascase of polders. The main water system acts as a water source.\n", + "\n", + "**Model approach**: All polder basins as well as the main water system are modelled with basin nodes. To let the system experience all 4 excess/shortage situation, forcing time series are made in a way that is adapting to them. Overall, assume that in one year, the system will experience precipitation (situation 1) in winter and early spring, precipitation shortage (situation 2) from late spring until early autumn. During situation 2, polder basin 4 will experience additional seepage (compoensating its shortage), and later polder basin 3 will also receive more seepage." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Setting up the basins:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "time = pd.date_range(model.starttime, model.endtime)\n", + "day_of_year = time.day_of_year.to_numpy()\n", + "\n", + "precipitation = np.zeros(day_of_year.size)\n", + "precipitation[0:90] = 1.72e-8\n", + "precipitation[330:366] = 1.72e-8\n", + "\n", + "evaporation = np.zeros(day_of_year.size)\n", + "evaporation[130:270] = 2.87e-8\n", + "\n", + "drainage = np.zeros(day_of_year.size)\n", + "drainage[120:270] = 0.4 * 2.87e-8\n", + "drainage_3 = drainage.copy()\n", + "drainage_3[210:240] = 17 * 2.87e-8\n", + "drainage_4 = drainage.copy()\n", + "drainage_4[160:240] = 13 * 2.87e-8\n", + "\n", + "infiltration = np.zeros(day_of_year.size)\n", + "infiltration[0:90] = 5e-8\n", + "\n", + "polder_profile = basin.Profile(area=[100, 100], level=[0.0, 3.0])\n", + "\n", + "basin_time = [\n", + " basin.Time(\n", + " time=pd.date_range(model.starttime, model.endtime),\n", + " drainage=drainage,\n", + " potential_evaporation=evaporation,\n", + " infiltration=0.0,\n", + " precipitation=precipitation,\n", + " urban_runoff=0.0,\n", + " ),\n", + "]\n", + "\n", + "basin_time4 = [\n", + " basin.Time(\n", + " time=pd.date_range(model.starttime, model.endtime),\n", + " drainage=drainage_4,\n", + " potential_evaporation=evaporation,\n", + " infiltration=0.0,\n", + " precipitation=precipitation,\n", + " urban_runoff=0.0,\n", + " ),\n", + "]\n", + "basin_time3 = [\n", + " basin.Time(\n", + " time=pd.date_range(model.starttime, model.endtime),\n", + " drainage=drainage_3,\n", + " potential_evaporation=evaporation,\n", + " infiltration=0.0,\n", + " precipitation=precipitation,\n", + " urban_runoff=0.0,\n", + " ),\n", + "]\n", + "\n", + "model.basin.add(\n", + " Node(1, Point(2.0, 0.0)),\n", + " [\n", + " basin.State(level=[2.5]),\n", + " basin.Profile(area=[1000, 1000], level=[0.0, 3.0]),\n", + " basin.Time(\n", + " time=pd.date_range(model.starttime, model.endtime),\n", + " drainage=0.0,\n", + " potential_evaporation=0.0,\n", + " infiltration=0.0,\n", + " precipitation=0.0,\n", + " urban_runoff=0.0,\n", + " ),\n", + " ],\n", + ")\n", + "model.basin.add(\n", + " Node(4, Point(0.0, -2.0)),\n", + " [basin.State(level=[1.5]), polder_profile, *basin_time],\n", + ")\n", + "model.basin.add(\n", + " Node(6, Point(0.0, -4.0)),\n", + " [basin.State(level=[1.0]), polder_profile, *basin_time],\n", + ")\n", + "model.basin.add(\n", + " Node(8, Point(2.0, -4.0)),\n", + " [basin.State(level=[1.5]), polder_profile, *basin_time3],\n", + ")\n", + "model.basin.add(\n", + " Node(10, Point(4.0, -4.0)),\n", + " [basin.State(level=[1.3]), polder_profile, *basin_time4],\n", + ")\n", + "model.basin.add(\n", + " Node(12, Point(4.0, -2.0)),\n", + " [basin.State(level=[0.1]), polder_profile, *basin_time],\n", + ")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "After all the basins are defined the connecting component inbetween the basins needs to be determined. For polder basin 5 (node 12), the water level needs to be maintain at 0.0 meter. This means that either there should be no water in this basin, or the basin bottom is lower than the reference level, and the water level should be maintained at the reference level.\n", + "\n", + "Since the water level of the main system is at 2.5 meter above the reference level a pump is needed to remove the water from polder basin 5." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Setup the pumps:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "model.pump.add(\n", + " Node(13, Point(4.0, -1.0)),\n", + " [pump.Static(flow_rate=[0.5 / 3600])],\n", + ")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "According to the description of situation 1 and 2, the water in one polder basin needs to be able to flow to the downstream basin if the current basin has too much water (i.e. the water level is above the setpoint) or if the downstream basin is below setpoint and needs more water. This could be modelled with an uncontrolled TabulatedRatingCurve node with Q=0 at the setpoint level (and Q rising when the level rises above setpoint) , or with an Outlet node where the minimum crest is specified at or just below the setpoint. In this example, we've chosen for the Outlet where we specify the minimum crest level 5 cm below the setpoint. For example: the Outlet of polder basin 1 (node 4) is specified with a minimum crest level of 1.95 meter." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Setup the outlets:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Set up outlet\n", + "model.outlet.add(\n", + " Node(2, Point(0.0, -1.0)),\n", + " [outlet.Static(flow_rate=[2 * 0.5 / 3600], min_crest_level=[0.0])],\n", + ")\n", + "model.outlet.add(\n", + " Node(5, Point(0.0, -3.0)),\n", + " [outlet.Static(flow_rate=[0.5 / 3600], min_crest_level=[1.95])],\n", + ")\n", + "model.outlet.add(\n", + " Node(7, Point(1.0, -4.0)),\n", + " [outlet.Static(flow_rate=[0.5 / 3600], min_crest_level=[1.45])],\n", + ")\n", + "model.outlet.add(\n", + " Node(9, Point(3.0, -4.0)),\n", + " [outlet.Static(flow_rate=[0.5 / 3600], min_crest_level=[0.95])],\n", + ")\n", + "model.outlet.add(\n", + " Node(11, Point(4.0, -3.0)),\n", + " [outlet.Static(flow_rate=[0.5 / 3600], min_crest_level=[0.45])],\n", + ")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "When using Outlets as connecting nodes, the flow over the Outlet needs to be controlled to maintain the water level at the setpoint. For this purpose we introduce local PidControllers, where the targets of the PidControllers are set to the setpoints. Disadvantage of this local control approach is the delay that is introduced to transport the 'basin X has a shortage' message upstream through the cascade to the inlet. Current functionality does not offer the capability for PidControl to take multiple observations into account when controlling the inlet. Combining multiple observations in one control is feasible with DiscreteControl. This could be an alternative approach to controlling the inlet for the cascading water system." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Setup the PID control:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "pid_control_data = {\n", + " \"listen_node_type\": \"Basin\",\n", + " \"proportional\": [0.05],\n", + " \"integral\": [0.00],\n", + " \"derivative\": [0.0],\n", + "}\n", + "model.pid_control.add(\n", + " Node(3, Point(-1.0, -1.0)),\n", + " [pid_control.Static(listen_node_id=[4], target=[2.0], **pid_control_data)],\n", + ")\n", + "model.pid_control.add(\n", + " Node(14, Point(-1.0, -3.0)),\n", + " [pid_control.Static(listen_node_id=[6], target=[1.5], **pid_control_data)],\n", + ")\n", + "model.pid_control.add(\n", + " Node(15, Point(1.0, -3.0)),\n", + " [pid_control.Static(listen_node_id=[8], target=[1.0], **pid_control_data)],\n", + ")\n", + "model.pid_control.add(\n", + " Node(16, Point(3.0, -3.0)),\n", + " [pid_control.Static(listen_node_id=[10], target=[0.5], **pid_control_data)],\n", + ")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Setup the edges:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "model.edge.add(model.basin[1], model.outlet[2])\n", + "model.edge.add(model.pid_control[3], model.outlet[2])\n", + "model.edge.add(model.outlet[2], model.basin[4])\n", + "model.edge.add(model.basin[4], model.outlet[5])\n", + "model.edge.add(model.outlet[5], model.basin[6])\n", + "model.edge.add(model.basin[6], model.outlet[7])\n", + "model.edge.add(model.outlet[7], model.basin[8])\n", + "model.edge.add(model.basin[8], model.outlet[9])\n", + "model.edge.add(model.outlet[9], model.basin[10])\n", + "model.edge.add(model.basin[10], model.outlet[11])\n", + "model.edge.add(model.outlet[11], model.basin[12])\n", + "model.edge.add(model.basin[12], model.pump[13])\n", + "model.edge.add(model.pump[13], model.basin[1])\n", + "model.edge.add(model.pid_control[14], model.outlet[5])\n", + "model.edge.add(model.pid_control[15], model.outlet[7])\n", + "model.edge.add(model.pid_control[16], model.outlet[9])" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "To plot the model" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "model.plot()" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Write the model to a TOML file and run it in the Julia." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "datadir = Path(\"data\")\n", + "model.write(datadir / \"local_pidcontrolled_cascade/ribasim.toml\")" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# | include: false\n", + "from subprocess import run\n", + "\n", + "run(\n", + " [\n", + " \"julia\",\n", + " \"--project=../../core\",\n", + " \"--eval\",\n", + " f'using Ribasim; Ribasim.main(\"{datadir.as_posix()}/local_pidcontrolled_cascade/ribasim.toml\")',\n", + " ],\n", + " check=True,\n", + ")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "After running the model, read back the result to plot the flow of each polder basin." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "datadir_flow = datadir / \"local_pidcontrolled_cascade/results/flow.arrow\"\n", + "df_flow = pd.read_feather(datadir_flow)\n", + "df_flow[\"edge\"] = list(zip(df_flow.from_node_id, df_flow.to_node_id))\n", + "df_flow[\"flow_m3d\"] = df_flow.flow_rate * 86400\n", + "\n", + "df_pivot = df_flow.pivot_table(index=\"time\", columns=\"edge\", values=\"flow_m3d\")" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Below graphs show the flow exchanged with the mainsystem (i.e. the inlet and the pump), and the flow of weirs inbetween the polder basins." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "df_input = df_pivot.loc[:, [(1, 2), (13, 1)]]\n", + "df_input.plot(ylim=[-1.0, 20.0])\n", + "df_weirs = df_pivot.loc[:, [(4, 5), (6, 7), (8, 9), (10, 11)]]\n", + "df_weirs.plot(ylim=[-1.0, 15.0])" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + " Below graph shows the vertical flux on each basin." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "datadir_basin = datadir / \"local_pidcontrolled_cascade/results/basin.arrow\"\n", + "df_basin = pd.read_feather(datadir_basin)\n", + "df_basin[\"vertical_flux\"] = (\n", + " df_basin[\"precipitation\"]\n", + " - df_basin[\"evaporation\"]\n", + " + df_basin[\"drainage\"]\n", + " + df_basin[\"infiltration\"]\n", + ")\n", + "df_basin_wide = df_basin.pivot_table(\n", + " index=\"time\", columns=\"node_id\", values=[\"storage\", \"level\", \"vertical_flux\"]\n", + ")\n", + "df_basin_wide[\"vertical_flux\"].plot()" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "In the following graph, the water level of basins are shown. The five polder basins are given starting levels that are different from their setpoints. It can be observed that in the beginning, the water level are changing and approaching to the set points. Later when the water levels are stable, they will not be affected by the forcing." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "df_basin_wide[\"level\"].plot()" + ] } ], "metadata": { diff --git a/docs/python/image/cascade-polder.jpg b/docs/python/image/cascade-polder.jpg new file mode 100644 index 0000000000000000000000000000000000000000..7fff88d49ab3a37b9321b9879914306e0fb69268 GIT binary patch literal 123669 zcmeFY2T)T{yEYo6NtfOU(ggvfsvuF6CISLV6`~>nB25GW1cD&F2?z)XktQHby427+ zQUwGl2?){?O4yLXpYNW3&i&7K&z*D5o%v_(oqKk&W-@#4?6ux^t@W1YdH31u*)r(D zJzWD`5ET^_=n3TmI-3XG0a2ej_m3~-prL$e&(qS<(9kl{)6<=2W@Kh&Vq{`sVdc2M z!phFd#B_n@0y`%cH#avk8!sOZ7as=~H`hNNLPbsa4-G8?EiD5V3lj_1fB86T2eF?& zr%S^^O(h08$4*7fPIcA|0)s$Qw3N~QW5ECOpgKnxBOU#D21X{z4Rsel=cuTu&(To- zW7L$pgDBTQH0-n-7q8x?<1~FrFXqLi^foE?ytsB%2e;WcRzmsN>re(p9$r3v0ZA!o znM<-Ns%q-juHU$GS4US*-{7A4!$%gDR@OES&mCVlIlH{{e&gfo2lEdIdlw!N85JFq 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model.integrator.p.user_demand.demand + vec(model.integrator.p.user_demand.demand) elseif name == "user_demand.realized" model.integrator.p.user_demand.realized_bmi else diff --git a/core/test/bmi_test.jl b/core/test/bmi_test.jl index 8db5258fd..3e4847c27 100644 --- a/core/test/bmi_test.jl +++ b/core/test/bmi_test.jl @@ -73,7 +73,7 @@ end BMI.update_until(model, 86400.0) value_second = BMI.get_value_ptr(model, name) # get_value_ptr does not copy - @test value_first === value_second + @test value_first === value_second || pointer(value_first) == pointer(value_second) end end From 5cf4492d9cf4fdc4bce8046827101d36f25152ed Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 9 Apr 2024 15:00:09 +0200 Subject: [PATCH 041/158] Add remaining water balance terms to basin.arrow (#1367) Technically these terms can be calculated from flow.arrow and the storage. But since calculating the water balance for a Basin is such a common operation, we include them directly. This also makes it easier to locate water balance errors in time and space, by including the error term. At some point we may also want to add the instantaneous inflow and outflow to the Basin struct, and update them in `formulate_du!`. This would allow us to reject steps with too large of a balance error, using one of the metrics mentioned in #1271. But for now this only adds them to the output via a callback. --------- Co-authored-by: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> --- core/src/callback.jl | 33 +++++++++++++++++++++++---- core/src/model.jl | 2 +- core/src/parameter.jl | 13 +++++++++++ core/src/read.jl | 11 ++++++++- core/src/util.jl | 3 +++ core/src/write.jl | 41 ++++++++++++++++++++++++++++----- core/test/run_models_test.jl | 33 +++++++++++++++++++++++++-- docs/core/usage.qmd | 44 ++++++++++++++++++++++-------------- utils/runstats.jl | 2 +- 9 files changed, 150 insertions(+), 32 deletions(-) diff --git a/core/src/callback.jl b/core/src/callback.jl index 4662ab891..bd94043a5 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -69,8 +69,8 @@ function create_callbacks( SavingCallback(save_vertical_flux, saved_vertical_flux; saveat, save_start = false) push!(callbacks, save_vertical_flux_cb) - # save the flows over time, as a Vector of the nonzeros(flow) - saved_flow = SavedValues(Float64, Vector{Float64}) + # save the flows over time + saved_flow = SavedValues(Float64, SavedFlow) save_flow_cb = SavingCallback(save_flow, saved_flow; saveat, save_start = false) push!(callbacks, save_flow_cb) @@ -138,14 +138,39 @@ end "Compute the average flows over the last saveat interval and write them to SavedValues" function save_flow(u, t, integrator) - (; flow_integrated) = integrator.p.graph[] + (; graph) = integrator.p + (; flow_integrated, flow_dict) = graph[] + (; node_id) = integrator.p.basin Δt = get_Δt(integrator) flow_mean = copy(flow_integrated) flow_mean ./= Δt fill!(flow_integrated, 0.0) - return flow_mean + # Divide the flows over edges to Basin inflow and outflow, regardless of edge direction. + inflow_mean = zeros(length(node_id)) + outflow_mean = zeros(length(node_id)) + + for (i, basin_id) in enumerate(node_id) + for in_id in inflow_ids(graph, basin_id) + q = flow_mean[flow_dict[in_id, basin_id]] + if q > 0 + inflow_mean[i] += q + else + outflow_mean[i] -= q + end + end + for out_id in outflow_ids(graph, basin_id) + q = flow_mean[flow_dict[basin_id, out_id]] + if q > 0 + outflow_mean[i] += q + else + inflow_mean[i] -= q + end + end + end + + return SavedFlow(; flow = flow_mean, inflow = inflow_mean, outflow = outflow_mean) end "Compute the average vertical fluxes over the last saveat interval and write diff --git a/core/src/model.jl b/core/src/model.jl index 111407a34..4aacb0417 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -1,5 +1,5 @@ struct SavedResults{V1 <: ComponentVector{Float64}} - flow::SavedValues{Float64, Vector{Float64}} + flow::SavedValues{Float64, SavedFlow} vertical_flux::SavedValues{Float64, V1} subgrid_level::SavedValues{Float64, Vector{Float64}} end diff --git a/core/src/parameter.jl b/core/src/parameter.jl index 26540502d..16774df21 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -134,6 +134,19 @@ end abstract type AbstractParameterNode end +""" +In-memory storage of saved mean flows for writing to results. + +- `flow`: The mean flows on all edges +- `inflow`: The sum of the mean flows coming into each basin +- `outflow`: The sum of the mean flows going out of each basin +""" +@kwdef struct SavedFlow + flow::Vector{Float64} + inflow::Vector{Float64} + outflow::Vector{Float64} +end + """ Requirements: diff --git a/core/src/read.jl b/core/src/read.jl index 9191b1cbc..20643c943 100644 --- a/core/src/read.jl +++ b/core/src/read.jl @@ -1009,13 +1009,22 @@ function exists(db::DB, tablename::String) return !isempty(query) end +""" + seconds(period::Millisecond)::Float64 + +Convert a period of type Millisecond to a Float64 in seconds. +You get Millisecond objects when subtracting two DateTime objects. +Dates.value returns the number of milliseconds. +""" +seconds(period::Millisecond)::Float64 = 0.001 * Dates.value(period) + """ seconds_since(t::DateTime, t0::DateTime)::Float64 Convert a DateTime to a float that is the number of seconds since the start of the simulation. This is used to convert between the solver's inner float time, and the calendar. """ -seconds_since(t::DateTime, t0::DateTime)::Float64 = 0.001 * Dates.value(t - t0) +seconds_since(t::DateTime, t0::DateTime)::Float64 = seconds(t - t0) """ datetime_since(t::Real, t0::DateTime)::DateTime diff --git a/core/src/util.jl b/core/src/util.jl index 6f4a88f0c..9f28670cf 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -534,6 +534,9 @@ function Base.getindex(fv::FlatVector, i::Int) return v[r + 1] end +"Construct a FlatVector from one of the fields of SavedFlow." +FlatVector(saveval::Vector{SavedFlow}, sym::Symbol) = FlatVector(getfield.(saveval, sym)) + """ Function that goes smoothly from 0 to 1 in the interval [0,threshold], and is constant outside this interval. diff --git a/core/src/write.jl b/core/src/write.jl index 66fec8fc2..1f2ed07d4 100644 --- a/core/src/write.jl +++ b/core/src/write.jl @@ -84,33 +84,40 @@ function basin_table( node_id::Vector{Int32}, storage::Vector{Float64}, level::Vector{Float64}, + inflow_rate::Vector{Float64}, + outflow_rate::Vector{Float64}, + storage_rate::Vector{Float64}, precipitation::Vector{Float64}, evaporation::Vector{Float64}, drainage::Vector{Float64}, infiltration::Vector{Float64}, + balance_error::Vector{Float64}, + relative_error::Vector{Float64}, } (; saved) = model - (; vertical_flux) = saved - # The last timestep is not included; there is no period over which to compute flows. data = get_storages_and_levels(model) storage = vec(data.storage[:, begin:(end - 1)]) level = vec(data.level[:, begin:(end - 1)]) + Δstorage = vec(diff(data.storage; dims = 2)) nbasin = length(data.node_id) ntsteps = length(data.time) - 1 nrows = nbasin * ntsteps + inflow_rate = FlatVector(saved.flow.saveval, :inflow) + outflow_rate = FlatVector(saved.flow.saveval, :outflow) precipitation = zeros(nrows) evaporation = zeros(nrows) drainage = zeros(nrows) infiltration = zeros(nrows) + balance_error = zeros(nrows) + relative_error = zeros(nrows) idx_row = 0 - - for vec in vertical_flux.saveval + for cvec in saved.vertical_flux.saveval for (precipitation_, evaporation_, drainage_, infiltration_) in - zip(vec.precipitation, vec.evaporation, vec.drainage, vec.infiltration) + zip(cvec.precipitation, cvec.evaporation, cvec.drainage, cvec.infiltration) idx_row += 1 precipitation[idx_row] = precipitation_ evaporation[idx_row] = evaporation_ @@ -120,17 +127,39 @@ function basin_table( end time = repeat(data.time[begin:(end - 1)]; inner = nbasin) + Δtime_seconds = seconds.(diff(data.time)) + Δtime = repeat(Δtime_seconds; inner = nbasin) node_id = repeat(Int32.(data.node_id); outer = ntsteps) + storage_rate = Δstorage ./ Δtime + + for i in 1:nrows + storage_flow = storage_rate[i] + storage_increase = max(storage_flow, 0.0) + storage_decrease = max(-storage_flow, 0.0) + + total_in = inflow_rate[i] + precipitation[i] + drainage[i] - storage_increase + total_out = outflow_rate[i] + evaporation[i] + infiltration[i] - storage_decrease + balance_error[i] = total_in - total_out + mean_flow_rate = 0.5 * (total_in + total_out) + if mean_flow_rate != 0 + relative_error[i] = balance_error[i] / mean_flow_rate + end + end return (; time, node_id, storage, level, + inflow_rate, + outflow_rate, + storage_rate, precipitation, evaporation, drainage, infiltration, + balance_error, + relative_error, ) end @@ -184,7 +213,7 @@ function flow_table( from_node_id = repeat(from_node_id; outer = ntsteps) to_node_type = repeat(to_node_type; outer = ntsteps) to_node_id = repeat(to_node_id; outer = ntsteps) - flow_rate = FlatVector(saveval) + flow_rate = FlatVector(saveval, :flow) return (; time, diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index de886783c..63132c4f6 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -8,7 +8,8 @@ toml_path = normpath(@__DIR__, "../../generated_testmodels/trivial/ribasim.toml") @test ispath(toml_path) - model = Ribasim.run(toml_path) + config = Ribasim.Config(toml_path) + model = Ribasim.run(config) @test model isa Ribasim.Model @test successful_retcode(model) (; p) = model.integrator @@ -49,12 +50,31 @@ :node_id, :storage, :level, + :inflow_rate, + :outflow_rate, + :storage_rate, :precipitation, :evaporation, :drainage, :infiltration, + :balance_error, + :relative_error, + ), + ( + DateTime, + Int32, + Float64, + Float64, + Float64, + Float64, + Float64, + Float64, + Float64, + Float64, + Float64, + Float64, + Float64, ), - (DateTime, Int32, Float64, Float64, Float64, Float64, Float64, Float64), ) @test Tables.schema(control) == Tables.Schema( (:time, :control_node_id, :truth_state, :control_state), @@ -113,6 +133,15 @@ @test basin.storage[1] ≈ 1.0 @test basin.level[1] ≈ 0.044711584 + @test basin.storage_rate[1] ≈ + (basin.storage[2] - basin.storage[1]) / config.solver.saveat + @test all(==(0), basin.inflow_rate) + @test all(>(0), basin.outflow_rate) + @test flow.flow_rate[1] == basin.outflow_rate[1] + @test all(==(0), basin.drainage) + @test all(==(0), basin.infiltration) + @test all(q -> abs(q) < 1e-7, basin.balance_error) + @test all(q -> abs(q) < 0.01, basin.relative_error) # The exporter interpolates 1:1 for three subgrid elements, but shifted by 1.0 meter. basin_level = basin.level[1] diff --git a/docs/core/usage.qmd b/docs/core/usage.qmd index 29e608b7a..3613fa409 100644 --- a/docs/core/usage.qmd +++ b/docs/core/usage.qmd @@ -707,23 +707,33 @@ derivative | Float64 | - | - The Basin table contains: -- Results of the storage and level of each basin, which are instantaneous values; -- Results of the vertical fluxes on each basin, which are mean values over the `saveat` intervals. In the time column the start of the period is indicated. -- The final state of the model is not part of this file, and will be placed in a separate output state file in the future. - -The initial condition is also written to the file. - -column | type | unit -------------- | ---------| ---- -time | DateTime | - -node_id | Int32 | - -storage | Float64 | $m^3$ -level | Float64 | $m$ -precipitation | Float64 | $m^3 s^{-1}$ -evaporation | Float64 | $m^3 s^{-1}$ -drainage | Float64 | $m^3 s^{-1}$ -infiltration | Float64 | $m^3 s^{-1}$ - +- Results of the storage and level of each Basin, which are instantaneous values; +- Results of the fluxes on each Basin, which are mean values over the `saveat` intervals. + In the time column the start of the period is indicated. +- The initial condition is written to the file, but the final state is not. + It will be placed in a separate output state file in the future. +- The `inflow_rate` and `outflow_rate` are the sum of the flows from other nodes into and out of the Basin respectively. + The actual flows determine in which term they are counted, not the edge direction. +- The `storage_rate` is flow that adds to the storage in the Basin, increasing the water level. In the equations below this number is split out into two non-negative numbers, `storage_increase` and `storage_decrease`. +- The `balance_error` is the difference of all Basin inflows (`total_inflow`) and outflows (`total_outflow`), that is (`inflow_rate` + `precipitation` + `drainage` - `storage_increase`) - (`outflow_rate` + `evaporation` + `infiltration` - `storage_decrease`). + It can be used to check if the numerical error when solving the water balance is sufficiently small. +- The `relative_error` is the fraction of the `balance_error` over the mean of the `total_inflow` and `total_outflow`. + +column | type | unit +-------------- | ---------| ---- +time | DateTime | - +node_id | Int32 | - +storage | Float64 | $m^3$ +level | Float64 | $m$ +inflow_rate | Float64 | $m^3 s^{-1}$ +outflow_rate | Float64 | $m^3 s^{-1}$ +storage_rate | Float64 | $m^3 s^{-1}$ +precipitation | Float64 | $m^3 s^{-1}$ +evaporation | Float64 | $m^3 s^{-1}$ +drainage | Float64 | $m^3 s^{-1}$ +infiltration | Float64 | $m^3 s^{-1}$ +balance_error | Float64 | $m^3 s^{-1}$ +relative_error | Float64 | - The table is sorted by time, and per time it is sorted by `node_id`. diff --git a/utils/runstats.jl b/utils/runstats.jl index ca81f0f17..97c97ba9f 100644 --- a/utils/runstats.jl +++ b/utils/runstats.jl @@ -106,7 +106,7 @@ toml_paths = get_testmodels() runs = OrderedDict{String, Any}[] for toml_path in toml_paths config = Ribasim.Config(toml_path) - println(basename(toml_path)) + println(basename(dirname(toml_path))) # run first to compile, if this takes too long perhaps we can shorten the duration Ribasim.run(config) timed = @timed Ribasim.run(config) From 35dfc2c61d406e8e22bdb5eeb293562bf1e2f418 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 9 Apr 2024 16:54:38 +0200 Subject: [PATCH 042/158] Sort only Edge fid so edge_id becomes more stable (#1363) Before we sorted the Edge table like this: ```python sort_keys = [ "from_node_type", "from_node_id", "to_node_type", "to_node_id", ] ``` This made it appear a bit more neat, though it served no other purpose. The `fid` index was mostly an implementation detail that the user did not specify, and it went from 1:n following the sorting above. However `fid` becomes `edge_id` in the flow.arrow. Therefore when a users added a new edge, usually half of all `edge_id`s changed, making post-processing unnecessarily difficult. Therefore this PR removes this sorting, such that the input order is retained, keeping the old `edge_id`s stable. With this I think we can close #1310. It is useful to have a single identifier value for an Edge, even though it is somewhat superfluous. With this PR it becomes stable, unless users start modifying `fid`s themselves. --- core/test/run_models_test.jl | 2 +- core/test/validation_test.jl | 4 ++-- python/ribasim/ribasim/geometry/edge.py | 17 ++++++++--------- python/ribasim/ribasim/input_base.py | 4 +++- python/ribasim/ribasim/model.py | 5 ++++- python/ribasim/tests/test_io.py | 19 ++++++++++++------- python/ribasim/tests/test_model.py | 4 ++-- 7 files changed, 32 insertions(+), 23 deletions(-) diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index 63132c4f6..5c9037cd2 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -127,7 +127,7 @@ @testset "Results values" begin @test flow.time[1] == DateTime(2020) - @test coalesce.(flow.edge_id[1:2], -1) == [1, 2] + @test coalesce.(flow.edge_id[1:2], -1) == [0, 1] @test flow.from_node_id[1:2] == [6, 0] @test flow.to_node_id[1:2] == [0, 922] diff --git a/core/test/validation_test.jl b/core/test/validation_test.jl index d9eaa68d9..cb4909860 100644 --- a/core/test/validation_test.jl +++ b/core/test/validation_test.jl @@ -361,10 +361,10 @@ end @test length(logger.logs) == 2 @test logger.logs[1].level == Error @test logger.logs[1].message == - "Invalid edge type 'foo' for edge #1 from node #1 to node #2." + "Invalid edge type 'foo' for edge #0 from node #1 to node #2." @test logger.logs[2].level == Error @test logger.logs[2].message == - "Invalid edge type 'bar' for edge #2 from node #2 to node #3." + "Invalid edge type 'bar' for edge #1 from node #2 to node #3." end @testitem "Subgrid validation" begin diff --git a/python/ribasim/ribasim/geometry/edge.py b/python/ribasim/ribasim/geometry/edge.py index 760055d7e..2106821f4 100644 --- a/python/ribasim/ribasim/geometry/edge.py +++ b/python/ribasim/ribasim/geometry/edge.py @@ -76,21 +76,20 @@ def add( crs=self.df.crs, ) - self.df = GeoDataFrame[EdgeSchema](pd.concat([self.df, table_to_append])) + self.df = GeoDataFrame[EdgeSchema]( + pd.concat([self.df, table_to_append], ignore_index=True) + ) + self.df.index.name = "fid" def get_where_edge_type(self, edge_type: str) -> NDArray[np.bool_]: assert self.df is not None return (self.df.edge_type == edge_type).to_numpy() def sort(self): - assert self.df is not None - sort_keys = [ - "from_node_type", - "from_node_id", - "to_node_type", - "to_node_id", - ] - self.df.sort_values(sort_keys, ignore_index=True, inplace=True) + # Only sort the index (fid / edge_id) since this needs to be sorted in a GeoPackage. + # Under most circumstances, this retains the input order, + # making the edge_id as stable as possible; useful for post-processing. + self.df.sort_index(inplace=True) def plot(self, **kwargs) -> Axes: assert self.df is not None diff --git a/python/ribasim/ribasim/input_base.py b/python/ribasim/ribasim/input_base.py index 8f57e6067..d46905bae 100644 --- a/python/ribasim/ribasim/input_base.py +++ b/python/ribasim/ribasim/input_base.py @@ -360,7 +360,9 @@ def _write_geopackage(self, path: Path) -> None: path : Path """ assert self.df is not None - self.df.to_file(path, layer=self.tablename(), driver="GPKG") + # the index name must be fid otherwise it will generate a separate fid column + self.df.index.name = "fid" + self.df.to_file(path, layer=self.tablename(), index=True, driver="GPKG") class ChildModel(BaseModel): diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 864d17116..34c808f73 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -175,8 +175,8 @@ def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): if not node.df["node_id"].is_unique: raise ValueError("node_id must be unique") node.df.set_index("node_id", drop=False, inplace=True) - node.df.sort_index(inplace=True) node.df.index.name = "fid" + node.df.sort_index(inplace=True) node._save(directory, input_dir) for sub in self._nodes(): @@ -207,6 +207,7 @@ def node_table(self) -> NodeTable: df = pd.concat(df_chunks, ignore_index=True) node_table = NodeTable(df=df) node_table.sort() + node_table.df.index.name = "fid" return node_table def _nodes(self) -> Generator[MultiNodeModel, Any, None]: @@ -413,6 +414,7 @@ def to_xugrid(self): edge_df = edge_df[edge_df.edge_type == "flow"] node_id = node_df.node_id.to_numpy() + edge_id = edge_df.index.to_numpy() from_node_id = edge_df.from_node_id.to_numpy() to_node_id = edge_df.to_node_id.to_numpy() @@ -443,6 +445,7 @@ def to_xugrid(self): uds = xugrid.UgridDataset(None, grid) uds = uds.assign_coords(node_id=(node_dim, node_id)) + uds = uds.assign_coords(edge_id=(edge_dim, edge_id)) uds = uds.assign_coords(from_node_id=(edge_dim, from_node_id)) uds = uds.assign_coords(to_node_id=(edge_dim, to_node_id)) diff --git a/python/ribasim/tests/test_io.py b/python/ribasim/tests/test_io.py index 46edcfbd6..476cf8485 100644 --- a/python/ribasim/tests/test_io.py +++ b/python/ribasim/tests/test_io.py @@ -79,7 +79,7 @@ def test_repr(): assert isinstance(pump_static._repr_html_(), str) -def test_extra_columns(basic_transient): +def test_extra_columns(): terminal_static = terminal.Static(meta_id=[-1, -2, -3]) assert "meta_id" in terminal_static.df.columns assert (terminal_static.df.meta_id == [-1, -2, -3]).all() @@ -106,14 +106,12 @@ def test_sort(level_setpoint_with_minmax, tmp_path): table.sort() assert table.df.iloc[0]["greater_than"] == 5.0 - edge.df.sort_values("from_node_type", ascending=False, inplace=True) - assert edge.df.iloc[0]["from_node_type"] != "Basin" - edge.sort() - assert edge.df.iloc[0]["from_node_type"] == "Basin" + # The edge table is not sorted + assert edge.df.iloc[1]["from_node_type"] == "Pump" + assert edge.df.iloc[1]["from_node_id"] == 3 # re-apply wrong sort, then check if it gets sorted on write table.df.sort_values("greater_than", ascending=False, inplace=True) - edge.df.sort_values("from_node_type", ascending=False, inplace=True) model.write(tmp_path / "basic/ribasim.toml") # write sorts the model in place assert table.df.iloc[0]["greater_than"] == 5.0 @@ -121,13 +119,16 @@ def test_sort(level_setpoint_with_minmax, tmp_path): table_loaded = model_loaded.discrete_control.condition edge_loaded = model_loaded.edge assert table_loaded.df.iloc[0]["greater_than"] == 5.0 - assert edge.df.iloc[0]["from_node_type"] == "Basin" + assert edge.df.iloc[1]["from_node_type"] == "Pump" + assert edge.df.iloc[1]["from_node_id"] == 3 __assert_equal(table.df, table_loaded.df) __assert_equal(edge.df, edge_loaded.df) def test_roundtrip(trivial, tmp_path): model1 = trivial + # set custom Edge index + model1.edge.df.index = [15, 12] model1dir = tmp_path / "model1" model2dir = tmp_path / "model2" # read a model and then write it to a different path @@ -142,6 +143,10 @@ def test_roundtrip(trivial, tmp_path): model2dir / "ribasim.toml" ).read_text() + # check if custom Edge indexes are retained (sorted) + assert (model1.edge.df.index == [12, 15]).all() + assert (model2.edge.df.index == [12, 15]).all() + # check if all tables are the same __assert_equal(model1.node_table().df, model2.node_table().df) __assert_equal(model1.edge.df, model2.edge.df) diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index d7311b63d..bdc60368c 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -162,8 +162,8 @@ def test_write_adds_fid_in_tables(basic, tmp_path): # for edge no index was provided, but it still needs to write it to file nrow = len(model_orig.edge.df) - assert model_orig.edge.df.index.name is None - assert model_orig.edge.df.index.equals(pd.Index(np.full(nrow, 0))) + assert model_orig.edge.df.index.name == "fid" + assert model_orig.edge.df.index.equals(pd.RangeIndex(nrow)) model_orig.write(tmp_path / "basic/ribasim.toml") with connect(tmp_path / "basic/database.gpkg") as connection: From ac26199e82bc1e5388d96b52531baa26f7b6d0a2 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Wed, 10 Apr 2024 14:37:43 +0200 Subject: [PATCH 043/158] Add sqlite3-editor to recommended vscode extensions (#1370) --- .vscode/extensions.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.vscode/extensions.json b/.vscode/extensions.json index d9a3b3ac2..0506b40b0 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -7,6 +7,7 @@ "njpwerner.autodocstring", "quarto.quarto", "tamasfe.even-better-toml", - "samuelcolvin.jinjahtml" + "samuelcolvin.jinjahtml", + "yy0931.vscode-sqlite3-editor" ] } From ff3a5d405c31b5bd7063c5b42404c0defda3c0fc Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Wed, 10 Apr 2024 22:37:54 +0200 Subject: [PATCH 044/158] Add results to xugrid (#1369) Part of #969 We cannot fully test this since we don't yet support testing results from Python. ```python import ribasim_testmodels import subprocess model = ribasim_testmodels.basic_model() toml_path = "basic/ribasim.toml" model.write(toml_path) subprocess.call(["ribasim.cmd", toml_path], check=True) uds = model.to_xugrid() uds.ugrid.to_netcdf("basic.nc") ``` This results in the following netCDF: [basic.zip](https://github.com/Deltares/Ribasim/files/14930060/basic.zip) It has `flow_rate` on the edges, and all variables from basin.arrow on the nodes. The edge visualization is fine, and it supports the QGIS temporal controller: ![image](https://github.com/Deltares/Ribasim/assets/4471859/9551afc0-114c-4c7d-882d-81c58952dbbd) I'm not yet happy with the visualization on nodes. Maybe @Huite has ideas on how to improve this? ![image](https://github.com/Deltares/Ribasim/assets/4471859/a1b1a6e9-abe3-435c-828f-471b4ec9bd0b) The problem is that the `uds` has all nodes, but we only have Basin results on Basins, so the rest is NaN. If there is a NaN in between QGIS doesn't draw the line. If instead we put `uds[var_name] = da.reindex_like(uds, fill_value=0.0)` then it looks more like the flow_rate image, though that isn't what we want. Ideally we get some nice clear points. Also it would be nice to support displaying 'Basin / area' polygons over time instead of nodes. @Huite is that something that UGRID supports? --- python/ribasim/ribasim/model.py | 68 ++++++++++++++++++++++++++++-- python/ribasim/tests/test_io.py | 3 ++ python/ribasim/tests/test_model.py | 9 +++- 3 files changed, 75 insertions(+), 5 deletions(-) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 34c808f73..7a395ab5a 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -264,10 +264,10 @@ def write(self, filepath: str | PathLike[str]) -> Path: # TODO # self.validate_model() filepath = Path(filepath) + self.filepath = filepath if not filepath.suffix == ".toml": raise ValueError(f"Filepath '{filepath}' is not a .toml file.") context_file_loading.set({}) - filepath = Path(filepath) directory = filepath.parent directory.mkdir(parents=True, exist_ok=True) self._save(directory, self.input_dir) @@ -280,7 +280,7 @@ def write(self, filepath: str | PathLike[str]) -> Path: def _load(cls, filepath: Path | None) -> dict[str, Any]: context_file_loading.set({}) - if filepath is not None: + if filepath is not None and filepath.is_file(): with open(filepath, "rb") as f: config = tomli.load(f) @@ -395,9 +395,10 @@ def plot(self, ax=None, indicate_subnetworks: bool = True) -> Any: return ax - def to_xugrid(self): + def to_xugrid(self, add_results: bool = True): """ - Convert the network to a `xugrid.UgridDataset`. + Convert the network and results to a `xugrid.UgridDataset`. + To get the network only, set `add_results=False`. This method will throw `ImportError`, if the optional dependency `xugrid` isn't installed. """ @@ -449,4 +450,63 @@ def to_xugrid(self): uds = uds.assign_coords(from_node_id=(edge_dim, from_node_id)) uds = uds.assign_coords(to_node_id=(edge_dim, to_node_id)) + if add_results: + uds = self._add_results(uds) + + return uds + + def _add_results(self, uds): + toml_path = self.filepath + if toml_path is None: + raise FileNotFoundError("Model must be written to disk to add results.") + + results_path = toml_path.parent / self.results_dir + basin_path = results_path / "basin.arrow" + flow_path = results_path / "flow.arrow" + + if not basin_path.is_file() or not flow_path.is_file(): + raise FileNotFoundError( + f"Cannot find results in '{results_path}', " + "perhaps the model needs to be run first." + ) + + basin_df = pd.read_feather(basin_path) + flow_df = pd.read_feather(flow_path) + + edge_dim = uds.grid.edge_dimension + node_dim = uds.grid.node_dimension + + # from node_id to the node_dim index + node_lookup = pd.Series( + index=uds["node_id"], + data=uds[edge_dim], + name="node_index", + ) + # from edge_id to the edge_dim index + edge_lookup = pd.Series( + index=uds["edge_id"], + data=uds[edge_dim], + name="edge_index", + ) + + basin_df = pd.read_feather(basin_path) + flow_df = pd.read_feather(flow_path) + + # datetime64[ms] gives trouble; https://github.com/pydata/xarray/issues/6318 + flow_df["time"] = flow_df["time"].astype("datetime64[ns]") + basin_df["time"] = basin_df["time"].astype("datetime64[ns]") + + # add flow results to the UgridDataset + flow_df[edge_dim] = edge_lookup[flow_df["edge_id"]].to_numpy() + flow_da = flow_df.set_index(["time", edge_dim])["flow_rate"].to_xarray() + uds[flow_da.name] = flow_da + + # add basin results to the UgridDataset + basin_df[node_dim] = node_lookup[basin_df["node_id"]].to_numpy() + basin_df.drop(columns=["node_id"], inplace=True) + basin_ds = basin_df.set_index(["time", node_dim]).to_xarray() + + for var_name, da in basin_ds.data_vars.items(): + uds[var_name] = da + return uds diff --git a/python/ribasim/tests/test_io.py b/python/ribasim/tests/test_io.py index 476cf8485..bd6fcc7a8 100644 --- a/python/ribasim/tests/test_io.py +++ b/python/ribasim/tests/test_io.py @@ -29,8 +29,11 @@ def __assert_equal(a: DataFrame, b: DataFrame) -> None: def test_basic(basic, tmp_path): model_orig = basic toml_path = tmp_path / "basic/ribasim.toml" + assert model_orig.filepath is None model_orig.write(toml_path) + assert model_orig.filepath == toml_path model_loaded = Model.read(toml_path) + assert model_loaded.filepath == toml_path with open(toml_path, "rb") as f: toml_dict = tomli.load(f) diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index bdc60368c..3e2ed89d6 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -233,7 +233,7 @@ def test_indexing(basic): def test_xugrid(basic, tmp_path): - uds = basic.to_xugrid() + uds = basic.to_xugrid(add_results=False) assert isinstance(uds, xugrid.UgridDataset) assert uds.grid.edge_dimension == "ribasim_nEdges" assert uds.grid.node_dimension == "ribasim_nNodes" @@ -243,6 +243,13 @@ def test_xugrid(basic, tmp_path): uds = xugrid.open_dataset(tmp_path / "ribasim.nc") assert uds.attrs["Conventions"] == "CF-1.9 UGRID-1.0" + with pytest.raises(FileNotFoundError, match="Model must be written to disk"): + basic.to_xugrid(add_results=True) + + basic.write(tmp_path / "ribasim.toml") + with pytest.raises(FileNotFoundError, match="Cannot find results"): + basic.to_xugrid(add_results=True) + def test_to_crs(bucket: Model): model = bucket From 78e08c9a890895b608ed3272c9b2b8c1509bdbd2 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Thu, 11 Apr 2024 10:33:52 +0200 Subject: [PATCH 045/158] Fix "add results to xugrid" (#1374) Small bug I didn't notice in #1369 because the basic example has the same number of nodes and edges. --- python/ribasim/ribasim/model.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 7a395ab5a..895cf7220 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -479,7 +479,7 @@ def _add_results(self, uds): # from node_id to the node_dim index node_lookup = pd.Series( index=uds["node_id"], - data=uds[edge_dim], + data=uds[node_dim], name="node_index", ) # from edge_id to the edge_dim index From 51bc8ae328950068faac59739306c478810cacac Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 11 Apr 2024 11:09:03 +0200 Subject: [PATCH 046/158] Fix PID example (#1373) Fixes https://github.com/Deltares/Ribasim/issues/1372. There were some mistakes in the schematization. --- docs/python/examples.ipynb | 43 ++++++++++++++++++++------------------ 1 file changed, 23 insertions(+), 20 deletions(-) diff --git a/docs/python/examples.ipynb b/docs/python/examples.ipynb index 315ce4777..5a76e3ae7 100644 --- a/docs/python/examples.ipynb +++ b/docs/python/examples.ipynb @@ -854,7 +854,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Setup flow boundary:\n" + "Setup level boundary:\n" ] }, { @@ -865,7 +865,7 @@ "source": [ "model.level_boundary.add(\n", " Node(4, Point(3.0, 0.0)),\n", - " [level_boundary.Static(level=[1])],\n", + " [level_boundary.Static(level=[5.0])],\n", ")" ] }, @@ -882,24 +882,27 @@ "metadata": {}, "outputs": [], "source": [ - "pid_control_data = [\n", - " pid_control.Time(\n", - " time=[\n", - " \"2020-01-01\",\n", - " \"2020-05-01\",\n", - " \"2020-07-01\",\n", - " \"2020-12-01\",\n", - " ],\n", - " listen_node_id=[2, 2, 2, 2],\n", - " listen_node_type=[\"Basin\", \"Basin\", \"Basin\", \"Basin\"],\n", - " target=[5.0, 5.0, 7.5, 7.5],\n", - " proportional=[-1e-3, 1e-3, 1e-3, 1e-3],\n", - " integral=[-1e-7, 1e-7, -1e-7, 1e-7],\n", - " derivative=[0.0, 0.0, 0.0, 0.0],\n", - " )\n", - "]\n", - "model.pid_control.add(Node(5, Point(1.5, 1.0)), pid_control_data)\n", - "model.pid_control.add(Node(7, Point(1.5, -1.0)), pid_control_data)" + "for node, proportional, integral in [\n", + " (Node(5, Point(1.5, 1.0)), -1e-3, -1e-7),\n", + " (Node(7, Point(1.5, -1.0)), 1e-3, 1e-7),\n", + "]:\n", + " pid_control_data = [\n", + " pid_control.Time(\n", + " time=[\n", + " \"2020-01-01\",\n", + " \"2020-05-01\",\n", + " \"2020-07-01\",\n", + " \"2020-12-01\",\n", + " ],\n", + " listen_node_id=2,\n", + " listen_node_type=\"Basin\",\n", + " target=[5.0, 5.0, 7.5, 7.5],\n", + " proportional=proportional,\n", + " integral=integral,\n", + " derivative=0.0,\n", + " )\n", + " ]\n", + " model.pid_control.add(node, pid_control_data)" ] }, { From 6e53201afebde6414aa6d5f836640851ea8c19dc Mon Sep 17 00:00:00 2001 From: Jingru923 <47444880+Jingru923@users.noreply.github.com> Date: Thu, 11 Apr 2024 15:30:49 +0200 Subject: [PATCH 047/158] rename file name and task name (#1377) Fixes #1376 renamed python lint to mypy in pipeline --- .github/workflows/{python_lint.yml => mypy.yml} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename .github/workflows/{python_lint.yml => mypy.yml} (97%) diff --git a/.github/workflows/python_lint.yml b/.github/workflows/mypy.yml similarity index 97% rename from .github/workflows/python_lint.yml rename to .github/workflows/mypy.yml index 3c4e1e57d..44bf1d363 100644 --- a/.github/workflows/python_lint.yml +++ b/.github/workflows/mypy.yml @@ -1,4 +1,4 @@ -name: Python Lint +name: Mypy Type Check on: push: branches: [main, update/pixi-lock] From 8ee1d35711a2ca6744b0e03fc560827b4e8c1314 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Thu, 11 Apr 2024 17:45:39 +0200 Subject: [PATCH 048/158] Add error starttime > endtime (#1379) Fixes https://github.com/Deltares/Ribasim/issues/1378. --------- Co-authored-by: Martijn Visser --- core/src/model.jl | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/core/src/model.jl b/core/src/model.jl index 4aacb0417..241ba2ec6 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -44,6 +44,11 @@ function Model(config::Config)::Model TimerOutputs.enable_debug_timings(Ribasim) # causes recompilation (!) end + t_end = seconds_since(config.endtime, config.starttime) + if t_end <= 0 + error("Model starttime is not before endtime.") + end + # All data from the database that we need during runtime is copied into memory, # so we can directly close it again. db = SQLite.DB(db_path) @@ -108,7 +113,6 @@ function Model(config::Config)::Model # Integrals for PID control integral = zeros(length(parameters.pid_control.node_id)) u0 = ComponentVector{Float64}(; storage, integral) - t_end = seconds_since(config.endtime, config.starttime) # for Float32 this method allows max ~1000 year simulations without accuracy issues @assert eps(t_end) < 3600 "Simulation time too long" t0 = zero(t_end) From 73ab09477b3397482f0275ff9b1e9785c7079bf3 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Fri, 12 Apr 2024 07:21:48 +0200 Subject: [PATCH 049/158] Unpin DiffEqCallbacks and update to 3.6.0 (#1380) Fixes #1344, now that our upstream fix is merged and released. --- Manifest.toml | 6 +++--- core/Project.toml | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index e5e063cf4..edd812975 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.0" manifest_format = "2.0" -project_hash = "22708fb864a341d70b001d75765852e92f1f5399" +project_hash = "122f7ec8a573942606ded1bed87e60f2356f603a" [[deps.ADTypes]] git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" @@ -401,9 +401,9 @@ version = "6.149.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "a731383bbafb87d496fb5e66f60c40e4a5f8f726" +git-tree-sha1 = "173d6a313878635b6c764163f639ac2d5f201fdc" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.4.0" +version = "3.6.0" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" diff --git a/core/Project.toml b/core/Project.toml index 99f416650..0a383e394 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -56,7 +56,7 @@ DataInterpolations = "4.4" DataStructures = "0.18" Dates = "<0.0.1,1" Dictionaries = "0.3.25, 0.4" -DiffEqCallbacks = "=3.4.0" +DiffEqCallbacks = "3.6" Documenter = "0.27,1" EnumX = "1.0" FiniteDiff = "2.21" From 19139f1c8cc7c539e7f18ea329b14f8226ceb79d Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Fri, 12 Apr 2024 10:28:44 +0200 Subject: [PATCH 050/158] Equal ratio allocation objective (#1366) Fixes https://github.com/Deltares/Ribasim/issues/1348. The objective function I found that leads to equal fraction allocation has terms of the form $$ d\left(1 - \frac{F}{d}\right)^2 = \left(\sqrt{d} - \frac{F}{\sqrt{d}}\right)^2 = \frac{F^2}{d} - 2F + d. $$ I can't explain yet why this works. --- core/src/allocation_init.jl | 158 +----------------- core/src/allocation_optim.jl | 105 ++++-------- core/test/allocation_test.jl | 115 ++++++++----- docs/core/allocation.qmd | 12 +- .../ribasim_testmodels/__init__.py | 2 + .../ribasim_testmodels/allocation.py | 97 +++++++++++ 6 files changed, 208 insertions(+), 281 deletions(-) diff --git a/core/src/allocation_init.jl b/core/src/allocation_init.jl index d17ffc094..0f16cb2b4 100644 --- a/core/src/allocation_init.jl +++ b/core/src/allocation_init.jl @@ -5,7 +5,8 @@ function find_subnetwork_connections!(p::Parameters)::Nothing (; subnetwork_demands, subnetwork_allocateds) = allocation for node_id in graph[].node_ids[1] for outflow_id in outflow_ids(graph, node_id) - if graph[outflow_id].allocation_network_id != 1 + if (graph[outflow_id].allocation_network_id != 1) | + (graph[node_id, outflow_id].allocation_network_id_source == 1) main_network_source_edges = get_main_network_connections(p, graph[outflow_id].allocation_network_id) edge = (node_id, outflow_id) @@ -405,55 +406,6 @@ function add_variables_flow_buffer!( return nothing end -""" -Certain allocation distribution types use absolute values in the objective function. -Since most optimization packages do not support the absolute value function directly, -New variables are introduced that act as the absolute value of an expression by -posing the appropriate constraints. -""" -function add_variables_absolute_value!( - problem::JuMP.Model, - p::Parameters, - allocation_network_id::Int32, -)::Nothing - (; graph, allocation) = p - (; main_network_connections) = allocation - - node_ids = graph[].node_ids[allocation_network_id] - node_ids_user_demand = NodeID[] - node_ids_level_demand = NodeID[] - node_ids_flow_demand = NodeID[] - - for node_id in node_ids - type = node_id.type - if type == NodeType.UserDemand - push!(node_ids_user_demand, node_id) - elseif type == NodeType.Basin - push!(node_ids_level_demand, node_id) - elseif has_external_demand(graph, node_id, :flow_demand)[1] - push!(node_ids_flow_demand, node_id) - end - end - - # For the main network, connections to subnetworks are treated as UserDemands - if is_main_network(allocation_network_id) - for connections_subnetwork in main_network_connections - for connection in connections_subnetwork - push!(node_ids_user_demand, connection[2]) - end - end - end - - problem[:F_abs_user_demand] = - JuMP.@variable(problem, F_abs_user_demand[node_id = node_ids_user_demand]) - problem[:F_abs_level_demand] = - JuMP.@variable(problem, F_abs_level_demand[node_id = node_ids_level_demand]) - problem[:F_abs_flow_demand] = - JuMP.@variable(problem, F_abs_flow_demand[node_id = node_ids_flow_demand]) - - return nothing -end - """ Add the flow capacity constraints to the allocation problem. Only finite capacities get a constraint. @@ -468,7 +420,6 @@ function add_constraints_capacity!( p::Parameters, allocation_network_id::Int32, )::Nothing - (; graph) = p main_network_source_edges = get_main_network_connections(p, allocation_network_id) F = problem[:F] edge_ids_finite_capacity = Tuple{NodeID, NodeID}[] @@ -692,106 +643,6 @@ function add_constraints_conservation_basin!( return nothing end -""" -Minimizing |expr| can be achieved by introducing a new variable expr_abs -and posing the following constraints: -expr_abs >= expr -expr_abs >= -expr -""" -function add_constraints_absolute_value!( - problem::JuMP.Model, - flow_per_node::Dict{NodeID, JuMP.VariableRef}, - F_abs::JuMP.Containers.DenseAxisArray, - variable_type::String, -)::Nothing - # Example demand - d = 2.0 - - node_ids = only(F_abs.axes) - - # These constraints together make sure that F_abs_* acts as the absolute - # value F_abs_* = |x| where x = F-d (here for example d = 2) - base_name = "abs_positive_$variable_type" - problem[Symbol(base_name)] = JuMP.@constraint( - problem, - [node_id = node_ids], - F_abs[node_id] >= (flow_per_node[node_id] - d), - base_name = base_name - ) - base_name = "abs_negative_$variable_type" - problem[Symbol(base_name)] = JuMP.@constraint( - problem, - [node_id = node_ids], - F_abs[node_id] >= -(flow_per_node[node_id] - d), - base_name = base_name - ) - - return nothing -end - -""" -Add constraints so that variables F_abs_user_demand act as the -absolute value of the expression comparing flow to a UserDemand to its demand. -""" -function add_constraints_absolute_value_user_demand!( - problem::JuMP.Model, - p::Parameters, -)::Nothing - (; graph) = p - - F = problem[:F] - F_abs_user_demand = problem[:F_abs_user_demand] - - flow_per_node = Dict( - node_id => F[(only(inflow_ids_allocation(graph, node_id)), node_id)] for - node_id in only(F_abs_user_demand.axes) - ) - - add_constraints_absolute_value!( - problem, - flow_per_node, - F_abs_user_demand, - "user_demand", - ) - - return nothing -end - -""" -Add constraints so that variables F_abs_level_demand act as the -absolute value of the expression comparing flow to a basin to its demand. -""" -function add_constraints_absolute_value_level_demand!(problem::JuMP.Model)::Nothing - F_basin_in = problem[:F_basin_in] - F_abs_level_demand = problem[:F_abs_level_demand] - flow_per_node = - Dict(node_id => F_basin_in[node_id] for node_id in only(F_abs_level_demand.axes)) - - add_constraints_absolute_value!(problem, flow_per_node, F_abs_level_demand, "basin") - - return nothing -end - -""" -Add constraints so that variables F_abs_flow_demand act as the -absolute value of the expression comparing flow to a flow buffer to the flow demand. -""" -function add_constraints_absolute_value_flow_demand!(problem::JuMP.Model)::Nothing - F_flow_buffer_in = problem[:F_flow_buffer_in] - F_abs_flow_demand = problem[:F_abs_flow_demand] - flow_per_node = Dict( - node_id => F_flow_buffer_in[node_id] for node_id in only(F_abs_flow_demand.axes) - ) - - add_constraints_absolute_value!( - problem, - flow_per_node, - F_abs_flow_demand, - "flow_demand", - ) - return nothing -end - """ Add the fractional flow constraints to the allocation problem. The constraint indices are allocation edges over a fractional flow node. @@ -921,7 +772,6 @@ function allocation_problem( # Add variables to problem add_variables_flow!(problem, p, allocation_network_id) add_variables_basin!(problem, p, allocation_network_id) - add_variables_absolute_value!(problem, p, allocation_network_id) add_variables_flow_buffer!(problem, p, allocation_network_id) # Add constraints to problem @@ -929,10 +779,6 @@ function allocation_problem( add_constraints_conservation_flow_demand!(problem, p, allocation_network_id) add_constraints_conservation_subnetwork!(problem, p, allocation_network_id) - add_constraints_absolute_value_user_demand!(problem, p) - add_constraints_absolute_value_flow_demand!(problem) - add_constraints_absolute_value_level_demand!(problem) - add_constraints_capacity!(problem, capacity, p, allocation_network_id) add_constraints_source!(problem, p, allocation_network_id) add_constraints_user_source!(problem, p, allocation_network_id) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index b42393f75..9172c13b2 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -1,67 +1,26 @@ @enumx OptimizationType internal_sources collect_demands allocate """ -Add a term to the objective function given by the objective type, -depending in the provided flow variable and the associated demand. +Add an objective term `demand * (1 - flow/demand)^2`. If the absolute +value of the demand is very small, this would lead to huge coefficients, +so in that case a term of the form (flow - demand)^2 is used. """ function add_objective_term!( + ex::JuMP.QuadExpr, demand::Float64, - constraint_abs_positive::Union{JuMP.ConstraintRef, Nothing} = nothing, - constraint_abs_negative::Union{JuMP.ConstraintRef, Nothing} = nothing, + F::JuMP.VariableRef, )::Nothing - # Objective function ∑ |F - d| - JuMP.set_normalized_rhs(constraint_abs_positive, -demand) - JuMP.set_normalized_rhs(constraint_abs_negative, demand) - return nothing -end - -""" -Add a term to the expression of the objective function corresponding to -the demand of a UserDemand. -""" -function add_user_demand_term!( - edge::Tuple{NodeID, NodeID}, - demand::Float64, - problem::JuMP.Model, -)::Nothing - node_id_user_demand = edge[2] - - constraint_abs_positive = problem[:abs_positive_user_demand][node_id_user_demand] - constraint_abs_negative = problem[:abs_negative_user_demand][node_id_user_demand] - - add_objective_term!(demand, constraint_abs_positive, constraint_abs_negative) -end - -""" -Add a term to the expression of the objective function corresponding to -the demand of a node with a a flow demand. -""" -function add_flow_demand_term!( - edge::Tuple{NodeID, NodeID}, - demand::Float64, - problem::JuMP.Model, -)::Nothing - node_id_flow_demand = edge[2] - - constraint_abs_positive = problem[:abs_positive_flow_demand][node_id_flow_demand] - constraint_abs_negative = problem[:abs_negative_flow_demand][node_id_flow_demand] - - add_objective_term!(demand, constraint_abs_positive, constraint_abs_negative) -end - -""" -Add a term to the expression of the objective function corresponding to -the demand of a basin. -""" -function add_basin_term!(problem::JuMP.Model, demand::Float64, node_id::NodeID)::Nothing - constraint_abs_positive = get(problem[:abs_positive_basin], node_id) - constraint_abs_negative = get(problem[:abs_negative_basin], node_id) - - if isnothing(constraint_abs_positive) - return + if abs(demand) < 1e-5 + # Error term (F - d)^2 = F² - 2dF + d² + JuMP.add_to_expression!(ex, 1.0, F, F) + JuMP.add_to_expression!(ex, -2.0 * demand, F) + JuMP.add_to_expression!(ex, demand^2) + else + # Error term d*(1 - F/d)^2 = F²/d - 2F + d + JuMP.add_to_expression!(ex, 1.0 / demand, F, F) + JuMP.add_to_expression!(ex, -2.0, F) + JuMP.add_to_expression!(ex, demand) end - - add_objective_term!(demand, constraint_abs_positive, constraint_abs_negative) return nothing end @@ -81,29 +40,17 @@ function set_objective_priority!( (; node_id, demand_reduced) = user_demand (; main_network_connections, subnetwork_demands) = allocation edge_ids = graph[].edge_ids[allocation_network_id] + F = problem[:F] - ex = JuMP.AffExpr() - - F_abs_user_demand = problem[:F_abs_user_demand] - F_abs_level_demand = problem[:F_abs_level_demand] - F_abs_flow_demand = problem[:F_abs_flow_demand] - - if !isempty(only(F_abs_user_demand.axes)) - ex += sum(F_abs_user_demand) - end - if !isempty(only(F_abs_level_demand.axes)) - ex += sum(F_abs_level_demand) - end - if !isempty(only(F_abs_flow_demand.axes)) - ex += sum(F_abs_flow_demand) - end + ex = JuMP.QuadExpr() # Terms for subnetworks as UserDemand if is_main_network(allocation_network_id) - for connections_subnetwork in main_network_connections + for connections_subnetwork in main_network_connections[2:end] for connection in connections_subnetwork d = subnetwork_demands[connection][priority_idx] - add_user_demand_term!(connection, d, problem) + F_inlet = F[connection] + add_objective_term!(ex, d, F_inlet) end end end @@ -116,7 +63,8 @@ function set_objective_priority!( # UserDemand user_demand_idx = findsorted(node_id, to_node_id) d = demand_reduced[user_demand_idx, priority_idx] - add_user_demand_term!(edge_id, d, problem) + F_ud = F[edge_id] + add_objective_term!(ex, d, F_ud) else has_demand, demand_node_id = has_external_demand(graph, to_node_id, :flow_demand) @@ -127,8 +75,9 @@ function set_objective_priority!( priority_idx == flow_priority_idx ? flow_demand.demand[findsorted(flow_demand.node_id, demand_node_id)] : 0.0 + F_fd = F[edge_id] - add_flow_demand_term!(edge_id, d, problem) + add_objective_term!(ex, d, F_fd) end end end @@ -142,7 +91,8 @@ function set_objective_priority!( get_basin_demand(allocation_model, u, p, t, node_id) : 0.0 _, basin_idx = id_index(basin.node_id, node_id) basin.demand[basin_idx] = d - add_basin_term!(problem, d, node_id) + F_ld = F_basin_in[node_id] + add_objective_term!(ex, d, F_ld) end new_objective = JuMP.@expression(problem, ex) @@ -259,7 +209,8 @@ function set_initial_capacities_source!( for edge_id in edge_ids if graph[edge_id...].allocation_network_id_source == allocation_network_id # If it is a source edge for this allocation problem - if edge_id ∉ main_network_source_edges + if (edge_id ∉ main_network_source_edges) | + is_main_network(allocation_network_id) # Reset the source to the current flow from the physical layer. source_capacity = get_flow(graph, edge_id..., 0) JuMP.set_normalized_rhs( diff --git a/core/test/allocation_test.jl b/core/test/allocation_test.jl index d804d8020..262c4e736 100644 --- a/core/test/allocation_test.jl +++ b/core/test/allocation_test.jl @@ -44,7 +44,7 @@ @test allocated[3, :] ≈ [0.0, 2.0] end -@testitem "Allocation objective: linear absolute" begin +@testitem "Allocation objective" begin using DataFrames: DataFrame using SciMLBase: successful_retcode using Ribasim: NodeID @@ -57,15 +57,23 @@ end config = Ribasim.Config(toml_path) model = Ribasim.run(config) @test successful_retcode(model) - problem = model.integrator.p.allocation.allocation_models[1].problem + (; p) = model.integrator + (; user_demand) = p + problem = p.allocation.allocation_models[1].problem objective = JuMP.objective_function(problem) - @test objective isa JuMP.AffExpr # Affine expression - @test :F_abs_user_demand in keys(problem.obj_dict) + @test objective isa JuMP.QuadExpr # Quadratic expression F = problem[:F] - F_abs_user_demand = problem[:F_abs_user_demand] - @test objective.terms[F_abs_user_demand[NodeID(:UserDemand, 5)]] == 1.0 - @test objective.terms[F_abs_user_demand[NodeID(:UserDemand, 6)]] == 1.0 + to_user_5 = F[(NodeID(:Basin, 4), NodeID(:UserDemand, 5))] + to_user_6 = F[(NodeID(:Basin, 4), NodeID(:UserDemand, 6))] + + @test objective.aff.constant ≈ sum(user_demand.demand) + @test objective.aff.terms[to_user_5] ≈ -2.0 + @test objective.aff.terms[to_user_6] ≈ -2.0 + @test objective.terms[JuMP.UnorderedPair(to_user_5, to_user_5)] ≈ + 1 / user_demand.demand[1] + @test objective.terms[JuMP.UnorderedPair(to_user_6, to_user_6)] ≈ + 1 / user_demand.demand[2] end @testitem "Allocation with controlled fractional flow" begin @@ -160,7 +168,7 @@ end @test Ribasim.is_main_network(first(allocation_network_ids)) # Connections from main network to subnetworks - @test isempty(main_network_connections[1]) + @test only(main_network_connections[1]) == (NodeID(:FlowBoundary, 1), NodeID(:Basin, 2)) @test only(main_network_connections[2]) == (NodeID(:Basin, 2), NodeID(:Pump, 11)) @test only(main_network_connections[3]) == (NodeID(:Basin, 6), NodeID(:Pump, 24)) @test only(main_network_connections[4]) == (NodeID(:Basin, 10), NodeID(:Pump, 38)) @@ -173,14 +181,6 @@ end (NodeID(:Basin, 10), NodeID(:Pump, 38)), ] ⊆ allocation_edges_main_network - # Subnetworks interpreted as user_demands require variables and constraints to - # support absolute value expressions in the objective function - allocation_model_main_network = Ribasim.get_allocation_model(p, Int32(1)) - problem = allocation_model_main_network.problem - @test problem[:F_abs_user_demand].axes[1] == NodeID.(:Pump, [11, 24, 38]) - @test problem[:abs_positive_user_demand].axes[1] == NodeID.(:Pump, [11, 24, 38]) - @test problem[:abs_negative_user_demand].axes[1] == NodeID.(:Pump, [11, 24, 38]) - # In each subnetwork, the connection from the main network to the subnetwork is # interpreted as a source @test Ribasim.get_allocation_model(p, Int32(3)).problem[:source].axes[1] == @@ -223,33 +223,40 @@ end # See the difference between these values here and in # "subnetworks_with_sources" - @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [4.0, 4.0, 0.0] + @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [4.0, 4.0, 0.0] atol = + 1e-4 @test subnetwork_demands[(NodeID(:Basin, 6), NodeID(:Pump, 24))] ≈ [0.004, 0.0, 0.0] - @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.002] + @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.002] rtol = + 1e-4 # Solving for the main network, containing subnetworks as UserDemands allocation_model = allocation_models[1] (; problem) = allocation_model - Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.allocate) + Ribasim.allocate_priority!(allocation_model, u, p, t, 1, OptimizationType.allocate) # Main network objective function + F = problem[:F] objective = JuMP.objective_function(problem) - objective_variables = keys(objective.terms) - F_abs_user_demand = problem[:F_abs_user_demand] - @test F_abs_user_demand[NodeID(:Pump, 11)] ∈ objective_variables - @test F_abs_user_demand[NodeID(:Pump, 24)] ∈ objective_variables - @test F_abs_user_demand[NodeID(:Pump, 38)] ∈ objective_variables + objective_edges = keys(objective.terms) + F_1 = F[(NodeID(:Basin, 2), NodeID(:Pump, 11))] + F_2 = F[(NodeID(:Basin, 6), NodeID(:Pump, 24))] + F_3 = F[(NodeID(:Basin, 10), NodeID(:Pump, 38))] + @test JuMP.UnorderedPair(F_1, F_1) ∈ objective_edges + @test JuMP.UnorderedPair(F_2, F_2) ∈ objective_edges + @test JuMP.UnorderedPair(F_3, F_3) ∈ objective_edges # Running full allocation algorithm Ribasim.set_flow!(graph, NodeID(:FlowBoundary, 1), NodeID(:Basin, 2), 4.5) u = ComponentVector(; storage = zeros(length(p.basin.node_id))) Ribasim.update_allocation!((; p, t, u)) - @test subnetwork_allocateds[NodeID(:Basin, 2), NodeID(:Pump, 11)] ≈ - [4.0, 0.49500000, 0.0] - @test subnetwork_allocateds[NodeID(:Basin, 6), NodeID(:Pump, 24)] ≈ - [0.00399999999, 0.0, 0.0] - @test subnetwork_allocateds[NodeID(:Basin, 10), NodeID(:Pump, 38)] ≈ [0.001, 0.0, 0.0] + @test subnetwork_allocateds[NodeID(:Basin, 2), NodeID(:Pump, 11)] ≈ [4.0, 0.4947, 0.0] atol = + 1e-4 + @test subnetwork_allocateds[NodeID(:Basin, 6), NodeID(:Pump, 24)] ≈ [0.004, 0.0, 0.0] rtol = + 1e-3 + + @test subnetwork_allocateds[NodeID(:Basin, 10), NodeID(:Pump, 38)] ≈ + [0.001, 2.473e-4, 0.0] rtol = 1e-3 # Test for existence of edges in allocation flow record allocation_flow = DataFrame(record_flow) @@ -262,7 +269,7 @@ end @test all(allocation_flow.edge_exists) @test user_demand.allocated[2, :] ≈ [4.0, 0.0, 0.0] - @test user_demand.allocated[7, :] ≈ [0.001, 0.0, 0.0] + @test all(isapprox.(user_demand.allocated[7, :], [0.001, 0.0, 0.0], atol = 1e-5)) end @testitem "subnetworks with sources" begin @@ -292,7 +299,7 @@ end # Collecting demands u = ComponentVector(; storage = zeros(length(basin.node_id))) - for allocation_model in allocation_models[2:end] + for (i, allocation_model) in enumerate(allocation_models[2:end]) Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.internal_sources) Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.collect_demands) end @@ -300,7 +307,8 @@ end # See the difference between these values here and in # "allocation with main network optimization problem", internal sources # lower the subnetwork demands - @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [3.1, 4.0, 0.0] + @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [3.1, 4.0, 0.0] atol = + 1e-4 @test subnetwork_demands[(NodeID(:Basin, 6), NodeID(:Pump, 24))] ≈ [0.004, 0.0, 0.0] @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.001] end @@ -399,7 +407,6 @@ end F = problem[:F] F_flow_buffer_in = problem[:F_flow_buffer_in] F_flow_buffer_out = problem[:F_flow_buffer_out] - F_abs_flow_demand = problem[:F_abs_flow_demand] node_id_with_flow_demand = NodeID(NodeType.TabulatedRatingCurve, 2) constraint_flow_out = problem[:flow_demand_outflow][node_id_with_flow_demand] @@ -435,9 +442,8 @@ end optimization_type, ) objective = JuMP.objective_function(problem) - @test F_abs_flow_demand[node_id_with_flow_demand] in keys(objective.terms) # Reduced demand - @test flow_demand.demand[1] == flow_demand.demand_itp[1](t) - 0.001 + @test flow_demand.demand[1] ≈ flow_demand.demand_itp[1](t) - 0.001 rtol = 1e-3 @test JuMP.normalized_rhs(constraint_flow_out) == Inf ## Priority 2 @@ -450,9 +456,9 @@ end optimization_type, ) # No demand left - @test flow_demand.demand[1] ≈ 0.0 + @test flow_demand.demand[1] < 1e-10 # Allocated - @test JuMP.value(only(F_flow_buffer_in)) == 0.001 + @test JuMP.value(only(F_flow_buffer_in)) ≈ 0.001 rtol = 1e-3 @test JuMP.normalized_rhs(constraint_flow_out) == 0.0 ## Priority 3 @@ -468,9 +474,10 @@ end # The flow from the source is used up in previous priorities @test JuMP.value(F[(NodeID(NodeType.LevelBoundary, 1), node_id_with_flow_demand)]) == 0 # So flow from the flow buffer is used for UserDemand #4 - @test JuMP.value(F_flow_buffer_out[node_id_with_flow_demand]) == 0.001 + @test JuMP.value(F_flow_buffer_out[node_id_with_flow_demand]) ≈ 0.001 rtol = 1e-3 + # Flow taken from buffer - @test JuMP.value(only(F_flow_buffer_out)) == user_demand.demand_itp[1][3](t) + @test JuMP.value(only(F_flow_buffer_out)) ≈ user_demand.demand_itp[1][3](t) rtol = 1e-3 # No flow coming from level boundary @test JuMP.value(F[(only(level_boundary.node_id), node_id_with_flow_demand)]) == 0 @@ -485,8 +492,9 @@ end ) # Get demand from buffers d = user_demand.demand_itp[3][4](t) - @assert JuMP.value(F[(NodeID(NodeType.UserDemand, 4), NodeID(NodeType.Basin, 7))]) + - JuMP.value(F[(NodeID(NodeType.UserDemand, 6), NodeID(NodeType.Basin, 7))]) == d + @test JuMP.value(F[(NodeID(NodeType.UserDemand, 4), NodeID(NodeType.Basin, 7))]) + + JuMP.value(F[(NodeID(NodeType.UserDemand, 6), NodeID(NodeType.Basin, 7))]) ≈ d rtol = + 1e-3 end @testitem "flow_demand_with_max_flow_rate" begin @@ -510,3 +518,28 @@ end ) @test constraint.set.upper == 2.0 end + +@testitem "equal_fraction_allocation" begin + using Ribasim: NodeID, NodeType + using StructArrays: StructVector + using DataFrames: DataFrame + + toml_path = + normpath(@__DIR__, "../../generated_testmodels/fair_distribution/ribasim.toml") + @test ispath(toml_path) + model = Ribasim.run(toml_path) + (; user_demand, graph) = model.integrator.p + + data_allocation = DataFrame(Ribasim.allocation_table(model)) + fractions = Vector{Float64}[] + + for id in user_demand.node_id + data_allocation_id = filter(:node_id => ==(id.value), data_allocation) + frac = data_allocation_id.allocated ./ data_allocation_id.demand + push!(fractions, frac) + end + + @test all(isapprox.(fractions[1], fractions[2], atol = 1e-4)) + @test all(isapprox.(fractions[1], fractions[3], atol = 1e-4)) + @test all(isapprox.(fractions[1], fractions[4], atol = 1e-4)) +end diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index e3669da7d..b0aa5e336 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -158,25 +158,23 @@ $$ The error between the flows and user demands is denoted by $E_{\text{user demand}}$, where $$ - E_{\text{user demand}} = \sum_{(i,j)\in E_S\;:\; i\in U_S} \left| F_{ij} - d_j^p(t)\right| + E_{\text{user demand}} = \sum_{(i,j)\in E_S\;:\; i\in U_S} d_j^p(t)\left(1 - \frac{F_{ij}}{d_j^p(t)}\right)^2 $$ :::{.callout-note} When performing main network allocation, the connections to subnetworks are also interpreted as UserDemand with demands determined by subnetwork demand collection. ::: -This type of objective cares about the absolute amount of water allocated to a demand. It treats all deviations equally which means it doesn't give larger punishment per flow unit if deviations increase. - -The absolute value applied here is not supported in a linear programming context directly; this requires introduction of new variables and constraints. For more details see [here](https://optimization.cbe.cornell.edu/index.php?title=Optimization_with_absolute_values). +This type of objective cares about the fraction of the demand allocated, and will lead to an equal fraction of all demands allocated when possible. Likewise, the error of level demands from basins is the absolute difference between flows consumed by basins and basin demands. $$ - E_{\text{level demand}} = \sum_{i \in B_S} \left| F_i^\text{basin in} - d_i^p(t)\right| + E_{\text{level demand}} = \sum_{i \in B_S} d_i^p(t)\left(1 - \frac{F_i^\text{basin in}}{d_i^p(t)}\right)^2 $$ Lastly, the error of the flow demands is given as below. $$ - E_{\text{flow demand}} = \sum_{i \in FD_S} \left| F_i^\text{buffer in} - d_i^p(t)\right| + E_{\text{flow demand}} = \sum_{i \in FD_S} d_i^p(t)\left(1 - \frac{F_i^\text{buffer in}}{d_i^p(t)}\right)^2 $$ ## The optimization constraints @@ -238,7 +236,7 @@ $$ {#eq-fractionalflowconstraint} ## Example -The following is an example of an optimization problem for the example shown [here](../python/examples.ipynb#model-with-allocation-user-demand): +The following is an example of an optimization problem for the example model shown [here](../python/examples.ipynb#model-with-allocation-user-demand): ```{julia} diff --git a/python/ribasim_testmodels/ribasim_testmodels/__init__.py b/python/ribasim_testmodels/ribasim_testmodels/__init__.py index ceeb1fad2..3706e2173 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/__init__.py +++ b/python/ribasim_testmodels/ribasim_testmodels/__init__.py @@ -7,6 +7,7 @@ import ribasim_testmodels from ribasim_testmodels.allocation import ( allocation_example_model, + fair_distribution_model, flow_demand_model, fractional_flow_subnetwork_model, level_demand_model, @@ -66,6 +67,7 @@ "bucket_model", "discrete_control_of_pid_control_model", "dutch_waterways_model", + "fair_distribution_model", "flow_boundary_time_model", "flow_condition_model", "flow_demand_model", diff --git a/python/ribasim_testmodels/ribasim_testmodels/allocation.py b/python/ribasim_testmodels/ribasim_testmodels/allocation.py index 1e102e8c0..5172a8dd8 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/allocation.py +++ b/python/ribasim_testmodels/ribasim_testmodels/allocation.py @@ -1029,3 +1029,100 @@ def linear_resistance_demand_model(): model.edge.add(model.flow_demand[4], model.linear_resistance[2]) return model + + +def fair_distribution_model(): + model = Model( + starttime="2020-01-01 00:00:00", + endtime="2020-01-07 00:00:00", + crs="EPSG:28992", + allocation=Allocation(use_allocation=True), + ) + + model.level_boundary.add( + Node(1, Point(0, 0), subnetwork_id=1), + [ + level_boundary.Static( + level=[1.0], + ) + ], + ) + + model.pump.add( + Node( + 2, + Point(1, 0), + subnetwork_id=1, + ), + [pump.Static(flow_rate=9.0, max_flow_rate=[9.0])], + ) + + model.basin.add( + Node(3, Point(2, 0), subnetwork_id=1), + [basin.Profile(area=1e3, level=[0.0, 1.0]), basin.State(level=[1.0])], + ) + + model.linear_resistance.add( + Node(4, Point(3, 0), subnetwork_id=1), + [linear_resistance.Static(resistance=[1.0])], + ) + + model.basin.add( + Node(5, Point(4, 0), subnetwork_id=1), + [basin.Profile(area=1e3, level=[0.0, 1.0]), basin.State(level=[1.0])], + ) + + model.user_demand.add( + Node(6, Point(2, 1), subnetwork_id=1), + [ + user_demand.Static( + priority=[1], demand=1.0, return_factor=1.0, min_level=0.2 + ) + ], + ) + + model.user_demand.add( + Node(7, Point(2, -1), subnetwork_id=1), + [ + user_demand.Static( + priority=[1], demand=2.0, return_factor=1.0, min_level=0.2 + ) + ], + ) + + model.user_demand.add( + Node(8, Point(4, 1), subnetwork_id=1), + [ + user_demand.Static( + priority=[1], demand=3.0, return_factor=1.0, min_level=0.2 + ) + ], + ) + + model.user_demand.add( + Node(9, Point(4, -1), subnetwork_id=1), + [ + user_demand.Time( + priority=1, + time=pd.date_range(start="2020-01", end="2021-01", freq="MS"), + demand=np.linspace(1.0, 5.0, 13), + return_factor=1.0, + min_level=0.2, + ) + ], + ) + + model.edge.add(model.level_boundary[1], model.pump[2], subnetwork_id=1) + model.edge.add(model.pump[2], model.basin[3]) + model.edge.add(model.basin[3], model.linear_resistance[4]) + model.edge.add(model.linear_resistance[4], model.basin[5]) + model.edge.add(model.basin[3], model.user_demand[6]) + model.edge.add(model.basin[3], model.user_demand[7]) + model.edge.add(model.basin[5], model.user_demand[8]) + model.edge.add(model.basin[5], model.user_demand[9]) + model.edge.add(model.user_demand[6], model.basin[3]) + model.edge.add(model.user_demand[7], model.basin[3]) + model.edge.add(model.user_demand[8], model.basin[5]) + model.edge.add(model.user_demand[9], model.basin[5]) + + return model From 510fa6c29db7e602a446d39254bcdec9b4c003a0 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 15 Apr 2024 10:18:16 +0200 Subject: [PATCH 051/158] Bump prefix-dev/setup-pixi from 0.5.1 to 0.5.2 (#1381) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Bumps [prefix-dev/setup-pixi](https://github.com/prefix-dev/setup-pixi) from 0.5.1 to 0.5.2.

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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/core_testmodels.yml | 2 +- .github/workflows/core_tests.yml | 2 +- .github/workflows/docs.yml | 2 +- .github/workflows/julia_auto_update.yml | 2 +- .github/workflows/mypy.yml | 2 +- .github/workflows/pixi_auto_update.yml | 2 +- .github/workflows/python_codegen.yml | 2 +- .github/workflows/python_tests.yml | 2 +- .github/workflows/qgis.yml | 2 +- 9 files changed, 9 insertions(+), 9 deletions(-) diff --git a/.github/workflows/core_testmodels.yml b/.github/workflows/core_testmodels.yml index 8833f6fe7..2c1328740 100644 --- a/.github/workflows/core_testmodels.yml +++ b/.github/workflows/core_testmodels.yml @@ -33,7 +33,7 @@ jobs: with: cache-compiled: "true" cache-registries: "true" - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Prepare pixi diff --git a/.github/workflows/core_tests.yml b/.github/workflows/core_tests.yml index d85f5ab2e..e687075e7 100644 --- a/.github/workflows/core_tests.yml +++ b/.github/workflows/core_tests.yml @@ -33,7 +33,7 @@ jobs: with: cache-compiled: "true" cache-registries: "true" - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Prepare pixi diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index c0a59462e..8864587b8 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -24,7 +24,7 @@ jobs: with: cache-compiled: "true" cache-registries: "true" - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Prepare pixi diff --git a/.github/workflows/julia_auto_update.yml b/.github/workflows/julia_auto_update.yml index f0011c3c8..dd0050fef 100644 --- a/.github/workflows/julia_auto_update.yml +++ b/.github/workflows/julia_auto_update.yml @@ -14,7 +14,7 @@ jobs: - uses: actions/checkout@v4 with: ssh-key: ${{ secrets.SSH_PRIVATE_KEY }} - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Update Julia manifest file diff --git a/.github/workflows/mypy.yml b/.github/workflows/mypy.yml index 44bf1d363..dca14991d 100644 --- a/.github/workflows/mypy.yml +++ b/.github/workflows/mypy.yml @@ -16,7 +16,7 @@ jobs: continue-on-error: true steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Prepare pixi diff --git a/.github/workflows/pixi_auto_update.yml b/.github/workflows/pixi_auto_update.yml index 0b9096599..39a34c520 100644 --- a/.github/workflows/pixi_auto_update.yml +++ b/.github/workflows/pixi_auto_update.yml @@ -14,7 +14,7 @@ jobs: - uses: actions/checkout@v4 with: ssh-key: ${{ secrets.SSH_PRIVATE_KEY }} - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" cache: false diff --git a/.github/workflows/python_codegen.yml b/.github/workflows/python_codegen.yml index 6f027ca04..0062e307f 100644 --- a/.github/workflows/python_codegen.yml +++ b/.github/workflows/python_codegen.yml @@ -16,7 +16,7 @@ jobs: continue-on-error: true steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Prepare pixi diff --git a/.github/workflows/python_tests.yml b/.github/workflows/python_tests.yml index 9770ccc46..485e2e834 100644 --- a/.github/workflows/python_tests.yml +++ b/.github/workflows/python_tests.yml @@ -26,7 +26,7 @@ jobs: - py310 steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Prepare pixi diff --git a/.github/workflows/qgis.yml b/.github/workflows/qgis.yml index 6bc4d97fb..70429ed7e 100644 --- a/.github/workflows/qgis.yml +++ b/.github/workflows/qgis.yml @@ -22,7 +22,7 @@ jobs: - windows-latest steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.5.1 + - uses: prefix-dev/setup-pixi@v0.5.2 with: pixi-version: "latest" - name: Prepare pixi From 799a2d58908635af2a0fe9db8c536891f502a03a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 15 Apr 2024 10:19:14 +0200 Subject: [PATCH 052/158] Bump peaceiris/actions-gh-pages from 3 to 4 (#1382) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Bumps [peaceiris/actions-gh-pages](https://github.com/peaceiris/actions-gh-pages) from 3 to 4.
Release notes

Sourced from peaceiris/actions-gh-pages's releases.

actions-github-pages v4.0.0

See CHANGELOG.md for more details.

actions-github-pages v3.9.3

See CHANGELOG.md for more details.

actions-github-pages v3.9.2

See CHANGELOG.md for more details.

actions-github-pages v3.9.1

  • update deps

See CHANGELOG.md for more details.

actions-github-pages v3.9.0

  • deps: bump node12 to node16
  • deps: bump @​actions/core from 1.6.0 to 1.10.0

See CHANGELOG.md for more details.

actions-github-pages v3.8.0

See CHANGELOG.md for more details.

actions-github-pages v3.7.3

See CHANGELOG.md for more details.

actions-github-pages v3.7.2

See CHANGELOG.md for more details.

actions-github-pages v3.7.1

See CHANGELOG.md for more details.

actions-github-pages v3.7.0

See CHANGELOG.md for more details.

Overviews:

  • Add .nojekyll file by default for all branches (#438) (079d483), closes #438
  • Add destination_dir option (#403) (f30118c), closes #403 #324 #390
  • Add exclude_assets option (#416) (0f5c65e), closes #416 #163
  • exclude_assets supports glob patterns (#417) (6f45501), closes #417 #163

actions-github-pages v3.6.4

See CHANGELOG.md for more details.

actions-github-pages v3.6.3

See CHANGELOG.md for more details.

actions-github-pages v3.6.2

See CHANGELOG.md for more details.

... (truncated)

Changelog

Sourced from peaceiris/actions-gh-pages's changelog.

3.9.3 (2023-03-30)

docs

fix

3.9.2 (2023-01-17)

chore

ci

deps

3.9.1 (2023-01-05)

chore

ci

  • add Renovate config (#802) (072d16c), closes #802
  • bump actions/dependency-review-action from 2 to 3 (#799) (e3b45f2), closes #799
  • bump peaceiris/actions-github-app-token from 1.1.4 to 1.1.5 (#798) (a5f971f), closes #798
  • bump peaceiris/actions-mdbook from 1.1.14 to 1.2.0 (#793) (9af6a68), closes #793
  • bump peaceiris/workflows from 0.17.1 to 0.17.2 (#794) (087a759), closes #794

... (truncated)

Commits
  • 4f9cc66 chore(release): 4.0.0
  • 9c75028 chore(release): Add build assets
  • 5049354 build: node 20.11.1
  • 4eb285e chore: bump node16 to node20 (#1067)
  • cdc09a3 chore(deps): update dependency @​types/node to v16.18.77 (#1065)
  • d830378 chore(deps): update dependency @​types/node to v16.18.76 (#1063)
  • 80daa1d chore(deps): update dependency @​types/node to v16.18.75 (#1061)
  • 108285e chore(deps): update dependency ts-jest to v29.1.2 (#1060)
  • 99c95ff chore(deps): update dependency @​types/node to v16.18.74 (#1058)
  • 1f46537 chore(deps): update dependency @​types/node to v16.18.73 (#1057)
  • Additional commits viewable in compare view

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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/docs.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 8864587b8..ae317c17f 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -41,7 +41,7 @@ jobs: - name: Publish Quarto Project if: github.ref == 'refs/heads/main' - uses: peaceiris/actions-gh-pages@v3 + uses: peaceiris/actions-gh-pages@v4 with: github_token: ${{ secrets.GITHUB_TOKEN }} publish_dir: ./docs/_site From 0574470c910f9e26e8e009a49911a7c964f4198b Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Mon, 15 Apr 2024 15:00:51 +0200 Subject: [PATCH 053/158] Revert "Equal ratio allocation objective (#1366)" (#1385) This reverts commit 19139f1c8cc7c539e7f18ea329b14f8226ceb79d, https://github.com/Deltares/Ribasim/pull/1366. It introduced some non-deterministic failures, that would be best to investigate outside of main. See https://github.com/Deltares/Ribasim/issues/1383. To land this again we should also include https://github.com/Deltares/Ribasim/pull/1384, which addressed one of the failures. --- core/src/allocation_init.jl | 158 +++++++++++++++++- core/src/allocation_optim.jl | 105 ++++++++---- core/test/allocation_test.jl | 115 +++++-------- docs/core/allocation.qmd | 12 +- .../ribasim_testmodels/__init__.py | 2 - .../ribasim_testmodels/allocation.py | 97 ----------- 6 files changed, 281 insertions(+), 208 deletions(-) diff --git a/core/src/allocation_init.jl b/core/src/allocation_init.jl index 0f16cb2b4..d17ffc094 100644 --- a/core/src/allocation_init.jl +++ b/core/src/allocation_init.jl @@ -5,8 +5,7 @@ function find_subnetwork_connections!(p::Parameters)::Nothing (; subnetwork_demands, subnetwork_allocateds) = allocation for node_id in graph[].node_ids[1] for outflow_id in outflow_ids(graph, node_id) - if (graph[outflow_id].allocation_network_id != 1) | - (graph[node_id, outflow_id].allocation_network_id_source == 1) + if graph[outflow_id].allocation_network_id != 1 main_network_source_edges = get_main_network_connections(p, graph[outflow_id].allocation_network_id) edge = (node_id, outflow_id) @@ -406,6 +405,55 @@ function add_variables_flow_buffer!( return nothing end +""" +Certain allocation distribution types use absolute values in the objective function. +Since most optimization packages do not support the absolute value function directly, +New variables are introduced that act as the absolute value of an expression by +posing the appropriate constraints. +""" +function add_variables_absolute_value!( + problem::JuMP.Model, + p::Parameters, + allocation_network_id::Int32, +)::Nothing + (; graph, allocation) = p + (; main_network_connections) = allocation + + node_ids = graph[].node_ids[allocation_network_id] + node_ids_user_demand = NodeID[] + node_ids_level_demand = NodeID[] + node_ids_flow_demand = NodeID[] + + for node_id in node_ids + type = node_id.type + if type == NodeType.UserDemand + push!(node_ids_user_demand, node_id) + elseif type == NodeType.Basin + push!(node_ids_level_demand, node_id) + elseif has_external_demand(graph, node_id, :flow_demand)[1] + push!(node_ids_flow_demand, node_id) + end + end + + # For the main network, connections to subnetworks are treated as UserDemands + if is_main_network(allocation_network_id) + for connections_subnetwork in main_network_connections + for connection in connections_subnetwork + push!(node_ids_user_demand, connection[2]) + end + end + end + + problem[:F_abs_user_demand] = + JuMP.@variable(problem, F_abs_user_demand[node_id = node_ids_user_demand]) + problem[:F_abs_level_demand] = + JuMP.@variable(problem, F_abs_level_demand[node_id = node_ids_level_demand]) + problem[:F_abs_flow_demand] = + JuMP.@variable(problem, F_abs_flow_demand[node_id = node_ids_flow_demand]) + + return nothing +end + """ Add the flow capacity constraints to the allocation problem. Only finite capacities get a constraint. @@ -420,6 +468,7 @@ function add_constraints_capacity!( p::Parameters, allocation_network_id::Int32, )::Nothing + (; graph) = p main_network_source_edges = get_main_network_connections(p, allocation_network_id) F = problem[:F] edge_ids_finite_capacity = Tuple{NodeID, NodeID}[] @@ -643,6 +692,106 @@ function add_constraints_conservation_basin!( return nothing end +""" +Minimizing |expr| can be achieved by introducing a new variable expr_abs +and posing the following constraints: +expr_abs >= expr +expr_abs >= -expr +""" +function add_constraints_absolute_value!( + problem::JuMP.Model, + flow_per_node::Dict{NodeID, JuMP.VariableRef}, + F_abs::JuMP.Containers.DenseAxisArray, + variable_type::String, +)::Nothing + # Example demand + d = 2.0 + + node_ids = only(F_abs.axes) + + # These constraints together make sure that F_abs_* acts as the absolute + # value F_abs_* = |x| where x = F-d (here for example d = 2) + base_name = "abs_positive_$variable_type" + problem[Symbol(base_name)] = JuMP.@constraint( + problem, + [node_id = node_ids], + F_abs[node_id] >= (flow_per_node[node_id] - d), + base_name = base_name + ) + base_name = "abs_negative_$variable_type" + problem[Symbol(base_name)] = JuMP.@constraint( + problem, + [node_id = node_ids], + F_abs[node_id] >= -(flow_per_node[node_id] - d), + base_name = base_name + ) + + return nothing +end + +""" +Add constraints so that variables F_abs_user_demand act as the +absolute value of the expression comparing flow to a UserDemand to its demand. +""" +function add_constraints_absolute_value_user_demand!( + problem::JuMP.Model, + p::Parameters, +)::Nothing + (; graph) = p + + F = problem[:F] + F_abs_user_demand = problem[:F_abs_user_demand] + + flow_per_node = Dict( + node_id => F[(only(inflow_ids_allocation(graph, node_id)), node_id)] for + node_id in only(F_abs_user_demand.axes) + ) + + add_constraints_absolute_value!( + problem, + flow_per_node, + F_abs_user_demand, + "user_demand", + ) + + return nothing +end + +""" +Add constraints so that variables F_abs_level_demand act as the +absolute value of the expression comparing flow to a basin to its demand. +""" +function add_constraints_absolute_value_level_demand!(problem::JuMP.Model)::Nothing + F_basin_in = problem[:F_basin_in] + F_abs_level_demand = problem[:F_abs_level_demand] + flow_per_node = + Dict(node_id => F_basin_in[node_id] for node_id in only(F_abs_level_demand.axes)) + + add_constraints_absolute_value!(problem, flow_per_node, F_abs_level_demand, "basin") + + return nothing +end + +""" +Add constraints so that variables F_abs_flow_demand act as the +absolute value of the expression comparing flow to a flow buffer to the flow demand. +""" +function add_constraints_absolute_value_flow_demand!(problem::JuMP.Model)::Nothing + F_flow_buffer_in = problem[:F_flow_buffer_in] + F_abs_flow_demand = problem[:F_abs_flow_demand] + flow_per_node = Dict( + node_id => F_flow_buffer_in[node_id] for node_id in only(F_abs_flow_demand.axes) + ) + + add_constraints_absolute_value!( + problem, + flow_per_node, + F_abs_flow_demand, + "flow_demand", + ) + return nothing +end + """ Add the fractional flow constraints to the allocation problem. The constraint indices are allocation edges over a fractional flow node. @@ -772,6 +921,7 @@ function allocation_problem( # Add variables to problem add_variables_flow!(problem, p, allocation_network_id) add_variables_basin!(problem, p, allocation_network_id) + add_variables_absolute_value!(problem, p, allocation_network_id) add_variables_flow_buffer!(problem, p, allocation_network_id) # Add constraints to problem @@ -779,6 +929,10 @@ function allocation_problem( add_constraints_conservation_flow_demand!(problem, p, allocation_network_id) add_constraints_conservation_subnetwork!(problem, p, allocation_network_id) + add_constraints_absolute_value_user_demand!(problem, p) + add_constraints_absolute_value_flow_demand!(problem) + add_constraints_absolute_value_level_demand!(problem) + add_constraints_capacity!(problem, capacity, p, allocation_network_id) add_constraints_source!(problem, p, allocation_network_id) add_constraints_user_source!(problem, p, allocation_network_id) diff --git a/core/src/allocation_optim.jl b/core/src/allocation_optim.jl index 9172c13b2..b42393f75 100644 --- a/core/src/allocation_optim.jl +++ b/core/src/allocation_optim.jl @@ -1,26 +1,67 @@ @enumx OptimizationType internal_sources collect_demands allocate """ -Add an objective term `demand * (1 - flow/demand)^2`. If the absolute -value of the demand is very small, this would lead to huge coefficients, -so in that case a term of the form (flow - demand)^2 is used. +Add a term to the objective function given by the objective type, +depending in the provided flow variable and the associated demand. """ function add_objective_term!( - ex::JuMP.QuadExpr, demand::Float64, - F::JuMP.VariableRef, + constraint_abs_positive::Union{JuMP.ConstraintRef, Nothing} = nothing, + constraint_abs_negative::Union{JuMP.ConstraintRef, Nothing} = nothing, )::Nothing - if abs(demand) < 1e-5 - # Error term (F - d)^2 = F² - 2dF + d² - JuMP.add_to_expression!(ex, 1.0, F, F) - JuMP.add_to_expression!(ex, -2.0 * demand, F) - JuMP.add_to_expression!(ex, demand^2) - else - # Error term d*(1 - F/d)^2 = F²/d - 2F + d - JuMP.add_to_expression!(ex, 1.0 / demand, F, F) - JuMP.add_to_expression!(ex, -2.0, F) - JuMP.add_to_expression!(ex, demand) + # Objective function ∑ |F - d| + JuMP.set_normalized_rhs(constraint_abs_positive, -demand) + JuMP.set_normalized_rhs(constraint_abs_negative, demand) + return nothing +end + +""" +Add a term to the expression of the objective function corresponding to +the demand of a UserDemand. +""" +function add_user_demand_term!( + edge::Tuple{NodeID, NodeID}, + demand::Float64, + problem::JuMP.Model, +)::Nothing + node_id_user_demand = edge[2] + + constraint_abs_positive = problem[:abs_positive_user_demand][node_id_user_demand] + constraint_abs_negative = problem[:abs_negative_user_demand][node_id_user_demand] + + add_objective_term!(demand, constraint_abs_positive, constraint_abs_negative) +end + +""" +Add a term to the expression of the objective function corresponding to +the demand of a node with a a flow demand. +""" +function add_flow_demand_term!( + edge::Tuple{NodeID, NodeID}, + demand::Float64, + problem::JuMP.Model, +)::Nothing + node_id_flow_demand = edge[2] + + constraint_abs_positive = problem[:abs_positive_flow_demand][node_id_flow_demand] + constraint_abs_negative = problem[:abs_negative_flow_demand][node_id_flow_demand] + + add_objective_term!(demand, constraint_abs_positive, constraint_abs_negative) +end + +""" +Add a term to the expression of the objective function corresponding to +the demand of a basin. +""" +function add_basin_term!(problem::JuMP.Model, demand::Float64, node_id::NodeID)::Nothing + constraint_abs_positive = get(problem[:abs_positive_basin], node_id) + constraint_abs_negative = get(problem[:abs_negative_basin], node_id) + + if isnothing(constraint_abs_positive) + return end + + add_objective_term!(demand, constraint_abs_positive, constraint_abs_negative) return nothing end @@ -40,17 +81,29 @@ function set_objective_priority!( (; node_id, demand_reduced) = user_demand (; main_network_connections, subnetwork_demands) = allocation edge_ids = graph[].edge_ids[allocation_network_id] - F = problem[:F] - ex = JuMP.QuadExpr() + ex = JuMP.AffExpr() + + F_abs_user_demand = problem[:F_abs_user_demand] + F_abs_level_demand = problem[:F_abs_level_demand] + F_abs_flow_demand = problem[:F_abs_flow_demand] + + if !isempty(only(F_abs_user_demand.axes)) + ex += sum(F_abs_user_demand) + end + if !isempty(only(F_abs_level_demand.axes)) + ex += sum(F_abs_level_demand) + end + if !isempty(only(F_abs_flow_demand.axes)) + ex += sum(F_abs_flow_demand) + end # Terms for subnetworks as UserDemand if is_main_network(allocation_network_id) - for connections_subnetwork in main_network_connections[2:end] + for connections_subnetwork in main_network_connections for connection in connections_subnetwork d = subnetwork_demands[connection][priority_idx] - F_inlet = F[connection] - add_objective_term!(ex, d, F_inlet) + add_user_demand_term!(connection, d, problem) end end end @@ -63,8 +116,7 @@ function set_objective_priority!( # UserDemand user_demand_idx = findsorted(node_id, to_node_id) d = demand_reduced[user_demand_idx, priority_idx] - F_ud = F[edge_id] - add_objective_term!(ex, d, F_ud) + add_user_demand_term!(edge_id, d, problem) else has_demand, demand_node_id = has_external_demand(graph, to_node_id, :flow_demand) @@ -75,9 +127,8 @@ function set_objective_priority!( priority_idx == flow_priority_idx ? flow_demand.demand[findsorted(flow_demand.node_id, demand_node_id)] : 0.0 - F_fd = F[edge_id] - add_objective_term!(ex, d, F_fd) + add_flow_demand_term!(edge_id, d, problem) end end end @@ -91,8 +142,7 @@ function set_objective_priority!( get_basin_demand(allocation_model, u, p, t, node_id) : 0.0 _, basin_idx = id_index(basin.node_id, node_id) basin.demand[basin_idx] = d - F_ld = F_basin_in[node_id] - add_objective_term!(ex, d, F_ld) + add_basin_term!(problem, d, node_id) end new_objective = JuMP.@expression(problem, ex) @@ -209,8 +259,7 @@ function set_initial_capacities_source!( for edge_id in edge_ids if graph[edge_id...].allocation_network_id_source == allocation_network_id # If it is a source edge for this allocation problem - if (edge_id ∉ main_network_source_edges) | - is_main_network(allocation_network_id) + if edge_id ∉ main_network_source_edges # Reset the source to the current flow from the physical layer. source_capacity = get_flow(graph, edge_id..., 0) JuMP.set_normalized_rhs( diff --git a/core/test/allocation_test.jl b/core/test/allocation_test.jl index 262c4e736..d804d8020 100644 --- a/core/test/allocation_test.jl +++ b/core/test/allocation_test.jl @@ -44,7 +44,7 @@ @test allocated[3, :] ≈ [0.0, 2.0] end -@testitem "Allocation objective" begin +@testitem "Allocation objective: linear absolute" begin using DataFrames: DataFrame using SciMLBase: successful_retcode using Ribasim: NodeID @@ -57,23 +57,15 @@ end config = Ribasim.Config(toml_path) model = Ribasim.run(config) @test successful_retcode(model) - (; p) = model.integrator - (; user_demand) = p - problem = p.allocation.allocation_models[1].problem + problem = model.integrator.p.allocation.allocation_models[1].problem objective = JuMP.objective_function(problem) - @test objective isa JuMP.QuadExpr # Quadratic expression + @test objective isa JuMP.AffExpr # Affine expression + @test :F_abs_user_demand in keys(problem.obj_dict) F = problem[:F] + F_abs_user_demand = problem[:F_abs_user_demand] - to_user_5 = F[(NodeID(:Basin, 4), NodeID(:UserDemand, 5))] - to_user_6 = F[(NodeID(:Basin, 4), NodeID(:UserDemand, 6))] - - @test objective.aff.constant ≈ sum(user_demand.demand) - @test objective.aff.terms[to_user_5] ≈ -2.0 - @test objective.aff.terms[to_user_6] ≈ -2.0 - @test objective.terms[JuMP.UnorderedPair(to_user_5, to_user_5)] ≈ - 1 / user_demand.demand[1] - @test objective.terms[JuMP.UnorderedPair(to_user_6, to_user_6)] ≈ - 1 / user_demand.demand[2] + @test objective.terms[F_abs_user_demand[NodeID(:UserDemand, 5)]] == 1.0 + @test objective.terms[F_abs_user_demand[NodeID(:UserDemand, 6)]] == 1.0 end @testitem "Allocation with controlled fractional flow" begin @@ -168,7 +160,7 @@ end @test Ribasim.is_main_network(first(allocation_network_ids)) # Connections from main network to subnetworks - @test only(main_network_connections[1]) == (NodeID(:FlowBoundary, 1), NodeID(:Basin, 2)) + @test isempty(main_network_connections[1]) @test only(main_network_connections[2]) == (NodeID(:Basin, 2), NodeID(:Pump, 11)) @test only(main_network_connections[3]) == (NodeID(:Basin, 6), NodeID(:Pump, 24)) @test only(main_network_connections[4]) == (NodeID(:Basin, 10), NodeID(:Pump, 38)) @@ -181,6 +173,14 @@ end (NodeID(:Basin, 10), NodeID(:Pump, 38)), ] ⊆ allocation_edges_main_network + # Subnetworks interpreted as user_demands require variables and constraints to + # support absolute value expressions in the objective function + allocation_model_main_network = Ribasim.get_allocation_model(p, Int32(1)) + problem = allocation_model_main_network.problem + @test problem[:F_abs_user_demand].axes[1] == NodeID.(:Pump, [11, 24, 38]) + @test problem[:abs_positive_user_demand].axes[1] == NodeID.(:Pump, [11, 24, 38]) + @test problem[:abs_negative_user_demand].axes[1] == NodeID.(:Pump, [11, 24, 38]) + # In each subnetwork, the connection from the main network to the subnetwork is # interpreted as a source @test Ribasim.get_allocation_model(p, Int32(3)).problem[:source].axes[1] == @@ -223,40 +223,33 @@ end # See the difference between these values here and in # "subnetworks_with_sources" - @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [4.0, 4.0, 0.0] atol = - 1e-4 + @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [4.0, 4.0, 0.0] @test subnetwork_demands[(NodeID(:Basin, 6), NodeID(:Pump, 24))] ≈ [0.004, 0.0, 0.0] - @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.002] rtol = - 1e-4 + @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.002] # Solving for the main network, containing subnetworks as UserDemands allocation_model = allocation_models[1] (; problem) = allocation_model - Ribasim.allocate_priority!(allocation_model, u, p, t, 1, OptimizationType.allocate) + Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.allocate) # Main network objective function - F = problem[:F] objective = JuMP.objective_function(problem) - objective_edges = keys(objective.terms) - F_1 = F[(NodeID(:Basin, 2), NodeID(:Pump, 11))] - F_2 = F[(NodeID(:Basin, 6), NodeID(:Pump, 24))] - F_3 = F[(NodeID(:Basin, 10), NodeID(:Pump, 38))] - @test JuMP.UnorderedPair(F_1, F_1) ∈ objective_edges - @test JuMP.UnorderedPair(F_2, F_2) ∈ objective_edges - @test JuMP.UnorderedPair(F_3, F_3) ∈ objective_edges + objective_variables = keys(objective.terms) + F_abs_user_demand = problem[:F_abs_user_demand] + @test F_abs_user_demand[NodeID(:Pump, 11)] ∈ objective_variables + @test F_abs_user_demand[NodeID(:Pump, 24)] ∈ objective_variables + @test F_abs_user_demand[NodeID(:Pump, 38)] ∈ objective_variables # Running full allocation algorithm Ribasim.set_flow!(graph, NodeID(:FlowBoundary, 1), NodeID(:Basin, 2), 4.5) u = ComponentVector(; storage = zeros(length(p.basin.node_id))) Ribasim.update_allocation!((; p, t, u)) - @test subnetwork_allocateds[NodeID(:Basin, 2), NodeID(:Pump, 11)] ≈ [4.0, 0.4947, 0.0] atol = - 1e-4 - @test subnetwork_allocateds[NodeID(:Basin, 6), NodeID(:Pump, 24)] ≈ [0.004, 0.0, 0.0] rtol = - 1e-3 - - @test subnetwork_allocateds[NodeID(:Basin, 10), NodeID(:Pump, 38)] ≈ - [0.001, 2.473e-4, 0.0] rtol = 1e-3 + @test subnetwork_allocateds[NodeID(:Basin, 2), NodeID(:Pump, 11)] ≈ + [4.0, 0.49500000, 0.0] + @test subnetwork_allocateds[NodeID(:Basin, 6), NodeID(:Pump, 24)] ≈ + [0.00399999999, 0.0, 0.0] + @test subnetwork_allocateds[NodeID(:Basin, 10), NodeID(:Pump, 38)] ≈ [0.001, 0.0, 0.0] # Test for existence of edges in allocation flow record allocation_flow = DataFrame(record_flow) @@ -269,7 +262,7 @@ end @test all(allocation_flow.edge_exists) @test user_demand.allocated[2, :] ≈ [4.0, 0.0, 0.0] - @test all(isapprox.(user_demand.allocated[7, :], [0.001, 0.0, 0.0], atol = 1e-5)) + @test user_demand.allocated[7, :] ≈ [0.001, 0.0, 0.0] end @testitem "subnetworks with sources" begin @@ -299,7 +292,7 @@ end # Collecting demands u = ComponentVector(; storage = zeros(length(basin.node_id))) - for (i, allocation_model) in enumerate(allocation_models[2:end]) + for allocation_model in allocation_models[2:end] Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.internal_sources) Ribasim.allocate!(p, allocation_model, t, u, OptimizationType.collect_demands) end @@ -307,8 +300,7 @@ end # See the difference between these values here and in # "allocation with main network optimization problem", internal sources # lower the subnetwork demands - @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [3.1, 4.0, 0.0] atol = - 1e-4 + @test subnetwork_demands[(NodeID(:Basin, 2), NodeID(:Pump, 11))] ≈ [3.1, 4.0, 0.0] @test subnetwork_demands[(NodeID(:Basin, 6), NodeID(:Pump, 24))] ≈ [0.004, 0.0, 0.0] @test subnetwork_demands[(NodeID(:Basin, 10), NodeID(:Pump, 38))][1:2] ≈ [0.001, 0.001] end @@ -407,6 +399,7 @@ end F = problem[:F] F_flow_buffer_in = problem[:F_flow_buffer_in] F_flow_buffer_out = problem[:F_flow_buffer_out] + F_abs_flow_demand = problem[:F_abs_flow_demand] node_id_with_flow_demand = NodeID(NodeType.TabulatedRatingCurve, 2) constraint_flow_out = problem[:flow_demand_outflow][node_id_with_flow_demand] @@ -442,8 +435,9 @@ end optimization_type, ) objective = JuMP.objective_function(problem) + @test F_abs_flow_demand[node_id_with_flow_demand] in keys(objective.terms) # Reduced demand - @test flow_demand.demand[1] ≈ flow_demand.demand_itp[1](t) - 0.001 rtol = 1e-3 + @test flow_demand.demand[1] == flow_demand.demand_itp[1](t) - 0.001 @test JuMP.normalized_rhs(constraint_flow_out) == Inf ## Priority 2 @@ -456,9 +450,9 @@ end optimization_type, ) # No demand left - @test flow_demand.demand[1] < 1e-10 + @test flow_demand.demand[1] ≈ 0.0 # Allocated - @test JuMP.value(only(F_flow_buffer_in)) ≈ 0.001 rtol = 1e-3 + @test JuMP.value(only(F_flow_buffer_in)) == 0.001 @test JuMP.normalized_rhs(constraint_flow_out) == 0.0 ## Priority 3 @@ -474,10 +468,9 @@ end # The flow from the source is used up in previous priorities @test JuMP.value(F[(NodeID(NodeType.LevelBoundary, 1), node_id_with_flow_demand)]) == 0 # So flow from the flow buffer is used for UserDemand #4 - @test JuMP.value(F_flow_buffer_out[node_id_with_flow_demand]) ≈ 0.001 rtol = 1e-3 - + @test JuMP.value(F_flow_buffer_out[node_id_with_flow_demand]) == 0.001 # Flow taken from buffer - @test JuMP.value(only(F_flow_buffer_out)) ≈ user_demand.demand_itp[1][3](t) rtol = 1e-3 + @test JuMP.value(only(F_flow_buffer_out)) == user_demand.demand_itp[1][3](t) # No flow coming from level boundary @test JuMP.value(F[(only(level_boundary.node_id), node_id_with_flow_demand)]) == 0 @@ -492,9 +485,8 @@ end ) # Get demand from buffers d = user_demand.demand_itp[3][4](t) - @test JuMP.value(F[(NodeID(NodeType.UserDemand, 4), NodeID(NodeType.Basin, 7))]) + - JuMP.value(F[(NodeID(NodeType.UserDemand, 6), NodeID(NodeType.Basin, 7))]) ≈ d rtol = - 1e-3 + @assert JuMP.value(F[(NodeID(NodeType.UserDemand, 4), NodeID(NodeType.Basin, 7))]) + + JuMP.value(F[(NodeID(NodeType.UserDemand, 6), NodeID(NodeType.Basin, 7))]) == d end @testitem "flow_demand_with_max_flow_rate" begin @@ -518,28 +510,3 @@ end ) @test constraint.set.upper == 2.0 end - -@testitem "equal_fraction_allocation" begin - using Ribasim: NodeID, NodeType - using StructArrays: StructVector - using DataFrames: DataFrame - - toml_path = - normpath(@__DIR__, "../../generated_testmodels/fair_distribution/ribasim.toml") - @test ispath(toml_path) - model = Ribasim.run(toml_path) - (; user_demand, graph) = model.integrator.p - - data_allocation = DataFrame(Ribasim.allocation_table(model)) - fractions = Vector{Float64}[] - - for id in user_demand.node_id - data_allocation_id = filter(:node_id => ==(id.value), data_allocation) - frac = data_allocation_id.allocated ./ data_allocation_id.demand - push!(fractions, frac) - end - - @test all(isapprox.(fractions[1], fractions[2], atol = 1e-4)) - @test all(isapprox.(fractions[1], fractions[3], atol = 1e-4)) - @test all(isapprox.(fractions[1], fractions[4], atol = 1e-4)) -end diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index b0aa5e336..e3669da7d 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -158,23 +158,25 @@ $$ The error between the flows and user demands is denoted by $E_{\text{user demand}}$, where $$ - E_{\text{user demand}} = \sum_{(i,j)\in E_S\;:\; i\in U_S} d_j^p(t)\left(1 - \frac{F_{ij}}{d_j^p(t)}\right)^2 + E_{\text{user demand}} = \sum_{(i,j)\in E_S\;:\; i\in U_S} \left| F_{ij} - d_j^p(t)\right| $$ :::{.callout-note} When performing main network allocation, the connections to subnetworks are also interpreted as UserDemand with demands determined by subnetwork demand collection. ::: -This type of objective cares about the fraction of the demand allocated, and will lead to an equal fraction of all demands allocated when possible. +This type of objective cares about the absolute amount of water allocated to a demand. It treats all deviations equally which means it doesn't give larger punishment per flow unit if deviations increase. + +The absolute value applied here is not supported in a linear programming context directly; this requires introduction of new variables and constraints. For more details see [here](https://optimization.cbe.cornell.edu/index.php?title=Optimization_with_absolute_values). Likewise, the error of level demands from basins is the absolute difference between flows consumed by basins and basin demands. $$ - E_{\text{level demand}} = \sum_{i \in B_S} d_i^p(t)\left(1 - \frac{F_i^\text{basin in}}{d_i^p(t)}\right)^2 + E_{\text{level demand}} = \sum_{i \in B_S} \left| F_i^\text{basin in} - d_i^p(t)\right| $$ Lastly, the error of the flow demands is given as below. $$ - E_{\text{flow demand}} = \sum_{i \in FD_S} d_i^p(t)\left(1 - \frac{F_i^\text{buffer in}}{d_i^p(t)}\right)^2 + E_{\text{flow demand}} = \sum_{i \in FD_S} \left| F_i^\text{buffer in} - d_i^p(t)\right| $$ ## The optimization constraints @@ -236,7 +238,7 @@ $$ {#eq-fractionalflowconstraint} ## Example -The following is an example of an optimization problem for the example model shown [here](../python/examples.ipynb#model-with-allocation-user-demand): +The following is an example of an optimization problem for the example shown [here](../python/examples.ipynb#model-with-allocation-user-demand): ```{julia} diff --git a/python/ribasim_testmodels/ribasim_testmodels/__init__.py b/python/ribasim_testmodels/ribasim_testmodels/__init__.py index 3706e2173..ceeb1fad2 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/__init__.py +++ b/python/ribasim_testmodels/ribasim_testmodels/__init__.py @@ -7,7 +7,6 @@ import ribasim_testmodels from ribasim_testmodels.allocation import ( allocation_example_model, - fair_distribution_model, flow_demand_model, fractional_flow_subnetwork_model, level_demand_model, @@ -67,7 +66,6 @@ "bucket_model", "discrete_control_of_pid_control_model", "dutch_waterways_model", - "fair_distribution_model", "flow_boundary_time_model", "flow_condition_model", "flow_demand_model", diff --git a/python/ribasim_testmodels/ribasim_testmodels/allocation.py b/python/ribasim_testmodels/ribasim_testmodels/allocation.py index 5172a8dd8..1e102e8c0 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/allocation.py +++ b/python/ribasim_testmodels/ribasim_testmodels/allocation.py @@ -1029,100 +1029,3 @@ def linear_resistance_demand_model(): model.edge.add(model.flow_demand[4], model.linear_resistance[2]) return model - - -def fair_distribution_model(): - model = Model( - starttime="2020-01-01 00:00:00", - endtime="2020-01-07 00:00:00", - crs="EPSG:28992", - allocation=Allocation(use_allocation=True), - ) - - model.level_boundary.add( - Node(1, Point(0, 0), subnetwork_id=1), - [ - level_boundary.Static( - level=[1.0], - ) - ], - ) - - model.pump.add( - Node( - 2, - Point(1, 0), - subnetwork_id=1, - ), - [pump.Static(flow_rate=9.0, max_flow_rate=[9.0])], - ) - - model.basin.add( - Node(3, Point(2, 0), subnetwork_id=1), - [basin.Profile(area=1e3, level=[0.0, 1.0]), basin.State(level=[1.0])], - ) - - model.linear_resistance.add( - Node(4, Point(3, 0), subnetwork_id=1), - [linear_resistance.Static(resistance=[1.0])], - ) - - model.basin.add( - Node(5, Point(4, 0), subnetwork_id=1), - [basin.Profile(area=1e3, level=[0.0, 1.0]), basin.State(level=[1.0])], - ) - - model.user_demand.add( - Node(6, Point(2, 1), subnetwork_id=1), - [ - user_demand.Static( - priority=[1], demand=1.0, return_factor=1.0, min_level=0.2 - ) - ], - ) - - model.user_demand.add( - Node(7, Point(2, -1), subnetwork_id=1), - [ - user_demand.Static( - priority=[1], demand=2.0, return_factor=1.0, min_level=0.2 - ) - ], - ) - - model.user_demand.add( - Node(8, Point(4, 1), subnetwork_id=1), - [ - user_demand.Static( - priority=[1], demand=3.0, return_factor=1.0, min_level=0.2 - ) - ], - ) - - model.user_demand.add( - Node(9, Point(4, -1), subnetwork_id=1), - [ - user_demand.Time( - priority=1, - time=pd.date_range(start="2020-01", end="2021-01", freq="MS"), - demand=np.linspace(1.0, 5.0, 13), - return_factor=1.0, - min_level=0.2, - ) - ], - ) - - model.edge.add(model.level_boundary[1], model.pump[2], subnetwork_id=1) - model.edge.add(model.pump[2], model.basin[3]) - model.edge.add(model.basin[3], model.linear_resistance[4]) - model.edge.add(model.linear_resistance[4], model.basin[5]) - model.edge.add(model.basin[3], model.user_demand[6]) - model.edge.add(model.basin[3], model.user_demand[7]) - model.edge.add(model.basin[5], model.user_demand[8]) - model.edge.add(model.basin[5], model.user_demand[9]) - model.edge.add(model.user_demand[6], model.basin[3]) - model.edge.add(model.user_demand[7], model.basin[3]) - model.edge.add(model.user_demand[8], model.basin[5]) - model.edge.add(model.user_demand[9], model.basin[5]) - - return model From 221155667a7c63164b17bf108b1411eb91888218 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 11:12:52 +0200 Subject: [PATCH 054/158] TeamCity change in 'Ribasim / Linux' project: 'Build' build template was extracted from 'Build libribasim' build configuration --- .../buildTypes/Ribasim_Linux_Build.xml | 65 +++++++++++++++++++ .../Ribasim_Linux_BuildLibribasim.xml | 61 ++--------------- 2 files changed, 70 insertions(+), 56 deletions(-) create mode 100644 .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml new file mode 100644 index 000000000..50b575465 --- /dev/null +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml @@ -0,0 +1,65 @@ + + + diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml index 411c2ddcf..3cda8935d 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml @@ -2,64 +2,13 @@ Build libribasim - - - + - - - - - - - - - - - - - - - - - - - - - - - - - - + + + - - - - - - - - - - + From f70aaccb8a80afdd44e45fdeaf5e6f680f491855 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 11:33:25 +0200 Subject: [PATCH 055/158] TeamCity change in 'Ribasim / Linux' project: requirements of 'Build' build template were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml index 50b575465..53027c4ec 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml @@ -46,7 +46,7 @@ pixi run build-libribasim]]> - + From 48a770e5b93bb1ccd2f092ad856cf3305be01835 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 11:34:06 +0200 Subject: [PATCH 056/158] TeamCity change in 'Ribasim / Linux' project: requirements of 'Build' build template were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml index 53027c4ec..4be8aaa2d 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml @@ -46,7 +46,7 @@ pixi run build-libribasim]]> - + From 2b5f0bd9a14eabc8085a48f441b97bb49e774585 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 11:34:27 +0200 Subject: [PATCH 057/158] TeamCity change in 'Ribasim / Linux' project: requirements of 'Build' build template were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml index 4be8aaa2d..50b575465 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml @@ -46,7 +46,7 @@ pixi run build-libribasim]]> - + From 391129adb5070ffe5fe16fbf01753a5087e5ed5b Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 11:40:56 +0200 Subject: [PATCH 058/158] TeamCity change in 'Ribasim / Linux' project: requirements of 'Build' build template were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml index 50b575465..86ecc3d31 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml @@ -46,7 +46,7 @@ pixi run build-libribasim]]> - + From bf3c6ef160759162ea4d8d36514e6d264027eab1 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 11:52:29 +0200 Subject: [PATCH 059/158] TeamCity change in 'Ribasim / Linux' project: 'Build' build template settings were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml index 86ecc3d31..3a1244512 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml @@ -8,6 +8,9 @@ - - - - - - - - From b956f00702449177d72a4fe796b83c283684e861 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:01:45 +0200 Subject: [PATCH 069/158] TeamCity change in 'Ribasim / Linux' project: 'Test ribasim_cli' build configuration was attached to 'Build' template --- .../Ribasim_Linux_TestRibasimCli.xml | 18 +++--------------- 1 file changed, 3 insertions(+), 15 deletions(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml index 8f64b9a8c..8a7ca3254 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml @@ -2,10 +2,9 @@ Test ribasim_cli - + @@ -40,11 +39,7 @@ pixi run test-ribasim-cli]]> - - - - - + @@ -74,14 +69,6 @@ pixi run test-ribasim-cli]]> - - - - - - - - @@ -108,3 +95,4 @@ pixi run test-ribasim-cli]]> + From 6ae873ac92268c1436451c8f57b2ee9407e71cfd Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:16:09 +0200 Subject: [PATCH 070/158] TeamCity change in 'Ribasim / Linux' project: 'Build' build template settings were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml | 1 - 1 file changed, 1 deletion(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml index 935189868..3a1244512 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml @@ -9,7 +9,6 @@ + + + + + + + + From 39d3c65dfc68f6ee14b5d60546e97076443f9d5a Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:21:39 +0200 Subject: [PATCH 076/158] TeamCity change in 'Ribasim / Linux' project: 'Test ribasim_api' build configuration was detached from 'Build' template --- .../Ribasim_Linux_TestRibasimApi.xml | 20 +++++++++++++++++-- 1 file changed, 18 insertions(+), 2 deletions(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml index 06ae7975f..56c94aaa9 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml @@ -2,9 +2,12 @@ Test ribasim_api - + @@ -39,9 +42,14 @@ pixi run test-ribasim-api]]> - + + + + + + @@ -76,6 +84,14 @@ pixi run test-ribasim-api]]> + + + + + + + + From b5aba731238a5d13dd6db41a34189357d3602cc5 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:25:42 +0200 Subject: [PATCH 077/158] TeamCity change in 'Ribasim / Linux' project: 'Os' build template was created --- .../Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml new file mode 100644 index 000000000..3321ccad1 --- /dev/null +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml @@ -0,0 +1,14 @@ + + + From b17196fb759af5a7b35ae33eb6558c4bc4c8df91 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:27:03 +0200 Subject: [PATCH 078/158] TeamCity change in 'Ribasim / Linux' project: general settings of 'Os' build template were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml index 3321ccad1..20e3b701e 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml @@ -3,6 +3,9 @@ Os Template for agent that uses Linux OS + + From d1c7377f5122b473c6f3a7d4afc2886eb1aa8833 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:28:03 +0200 Subject: [PATCH 079/158] TeamCity change in 'Ribasim / Linux' project: requirements of 'Os' build template were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml index 20e3b701e..5fb92150b 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml @@ -9,7 +9,9 @@ - + + + From 97214a1534103b5ddb8a3ecca1a3d3a00aba5e92 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:30:45 +0200 Subject: [PATCH 080/158] TeamCity change in 'Ribasim / Linux' project: VCS roots of 'Os' build template were updated --- .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml | 1 + 1 file changed, 1 insertion(+) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml index 5fb92150b..5e73b1d7a 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml @@ -4,6 +4,7 @@ Template for agent that uses Linux OS + From 5d640dbe520ed8cba431079fa93f855c89ee8e6c Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:32:42 +0200 Subject: [PATCH 081/158] TeamCity change in 'Ribasim / Linux' project: 'Build ribasim_cli' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Linux_BuildRibasimCli.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml index dc2bffb65..ecdc60598 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml @@ -2,10 +2,9 @@ Build ribasim_cli - + @@ -70,3 +69,4 @@ pixi run build-ribasim-cli]]> + From 186b5091c0c9b2f425b153b77cb192d4c9bba8c4 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:33:10 +0200 Subject: [PATCH 082/158] TeamCity change in 'Ribasim / Linux' project: 'Test ribasim_api' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Linux_TestRibasimApi.xml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml index 56c94aaa9..91bb162e9 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml @@ -2,12 +2,10 @@ Test ribasim_api - + @@ -49,7 +47,6 @@ pixi run test-ribasim-api]]> - From d7341a009becbb4b9e6b026219fad3b3cff1afe7 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:33:18 +0200 Subject: [PATCH 083/158] TeamCity change in 'Ribasim / Linux' project: 'Test ribasim_cli' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Linux_TestRibasimCli.xml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml index 1892b5879..39e00aba1 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml @@ -2,12 +2,10 @@ Test ribasim_cli - + @@ -49,7 +47,6 @@ pixi run test-ribasim-cli]]> - From 4ba0d9a99dba6330609a689bd133411f9bfe849e Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:33:29 +0200 Subject: [PATCH 084/158] TeamCity change in 'Ribasim / Linux' project: 'Build libribasim' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Linux_BuildLibribasim.xml | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml index f9ad518e0..1bca99252 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml @@ -2,12 +2,10 @@ Build libribasim - + @@ -46,9 +44,7 @@ pixi run build-libribasim]]> - - - + From 3057347b6305dd055f1f3a5c3681b0de4b88c956 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:33:44 +0200 Subject: [PATCH 085/158] TeamCity change in 'Ribasim / Linux' project: 'Build' build template was removed --- .../buildTypes/Ribasim_Linux_Build.xml | 69 ------------------- 1 file changed, 69 deletions(-) delete mode 100644 .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml deleted file mode 100644 index 935189868..000000000 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Build.xml +++ /dev/null @@ -1,69 +0,0 @@ - - - From c70a1e6478e23e07c093a4bb8ba191c763c34a0c Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:37:50 +0200 Subject: [PATCH 086/158] TeamCity change in 'Ribasim / Windows' project: 'Build libribasim' build configuration settings were updated --- .../buildTypes/Ribasim_Windows_BuildLibribasim.xml | 1 - 1 file changed, 1 deletion(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml index 2f95b2615..2b3c25366 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml @@ -5,7 +5,6 @@ - From cd55be2d4c9094959a48d7bee3c70038e162da64 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:37:55 +0200 Subject: [PATCH 087/158] TeamCity change in 'Ribasim / Windows' project: 'Build libribasim' build configuration settings were updated --- .../buildTypes/Ribasim_Windows_BuildLibribasim.xml | 1 - 1 file changed, 1 deletion(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml index 2b3c25366..e781aa589 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml @@ -5,7 +5,6 @@ - From e8b86ac5b9ab62acf4ff6034817568fbeda1eac5 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:38:10 +0200 Subject: [PATCH 088/158] TeamCity change in 'Ribasim / Windows' project: 'Build libribasim' build configuration was detached from 'Build' template --- .../Ribasim_Windows_BuildLibribasim.xml | 46 +++++++++++++++++-- 1 file changed, 43 insertions(+), 3 deletions(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml index e781aa589..c5be9f380 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml @@ -2,17 +2,57 @@ Build libribasim - + + + - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From a7e6dbe71affc430527c996519980964a3ae2d84 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:44:24 +0200 Subject: [PATCH 089/158] TeamCity change in 'Ribasim / Windows' project: 'Build' build template was removed --- .../buildTypes/Ribasim_Windows_Build.xml | 54 ------------------- 1 file changed, 54 deletions(-) delete mode 100644 .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Build.xml diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Build.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Build.xml deleted file mode 100644 index d2d6be2b8..000000000 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Build.xml +++ /dev/null @@ -1,54 +0,0 @@ - - - From d3f1c441bc297e006d8bc74aeb385e3d62e95c62 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:45:35 +0200 Subject: [PATCH 090/158] TeamCity change in 'Ribasim / Windows' project: 'Os' build template was created --- .../buildTypes/Ribasim_Windows_Os.xml | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml new file mode 100644 index 000000000..f575b6919 --- /dev/null +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml @@ -0,0 +1,14 @@ + + + From 4f52f45a734122214d70a6984051a06d4ebae00e Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:45:53 +0200 Subject: [PATCH 091/158] TeamCity change in 'Ribasim / Windows' project: VCS roots of 'Os' build template were updated --- .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml index f575b6919..a2a6b8f92 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml @@ -3,6 +3,9 @@ Os Template for agent that uses Windows OS + + From a1b205f6aba59c0ffaa43a99c73d2de231d7d272 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:46:26 +0200 Subject: [PATCH 092/158] TeamCity change in 'Ribasim / Windows' project: requirements of 'Os' build template were updated --- .teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml index a2a6b8f92..87b1a65fa 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_Os.xml @@ -9,7 +9,9 @@ - + + + From 4054219f79b2be62c8031db2a9e0632d1045aae8 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:53:27 +0200 Subject: [PATCH 093/158] TeamCity change in 'Ribasim / Windows' project: 'Build libribasim' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Windows_BuildLibribasim.xml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml index c5be9f380..d2249ca64 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildLibribasim.xml @@ -2,10 +2,9 @@ Build libribasim - + @@ -39,7 +38,6 @@ pixi run build-libribasim]]> - From 18d06ace41b0d35fe88c34aec70208676889f800 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:53:55 +0200 Subject: [PATCH 094/158] TeamCity change in 'Ribasim / Windows' project: 'Build ribasim_cli' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Windows_BuildRibasimCli.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml index f9c3f4f6a..0979e904c 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasimCli.xml @@ -2,10 +2,9 @@ Build ribasim_cli - + @@ -58,3 +57,4 @@ pixi run build-ribasim-cli]]> + From 941e68bdac37f5be2b5c44a8b0bba716c8fe5024 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:54:06 +0200 Subject: [PATCH 095/158] TeamCity change in 'Ribasim / Windows' project: 'Test ribasim_api' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Windows_TestRibasimApi.xml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml index bb6b05130..173949191 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimApi.xml @@ -2,10 +2,9 @@ Test ribasim_api - + From 5e46eae86fa161a70c9342cb6fbadd8e720fc7d5 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 13:54:17 +0200 Subject: [PATCH 096/158] TeamCity change in 'Ribasim / Windows' project: 'Test ribasim_cli' build configuration was attached to 'Os' template --- .../buildTypes/Ribasim_Windows_TestRibasimCli.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml index 7edcc1961..b6de156b6 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimCli.xml @@ -2,10 +2,9 @@ Test ribasim_cli - + @@ -97,3 +96,4 @@ + From 184827a964fc5bed356f86e0fc2d367caf1c7d0b Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 16 Apr 2024 14:06:30 +0200 Subject: [PATCH 097/158] Run allocation first after BMI stop (#1390) This allows allocation over period `(t, t + dt)` to use variables set over BMI at time `t`. We no longer run allocation as a callback, but call it ourselves, such that we can control that BMI runs allocation first before running the physical layer. --- core/src/Ribasim.jl | 1 + core/src/bmi.jl | 7 +++--- core/src/callback.jl | 10 -------- core/src/main.jl | 7 +++--- core/src/model.jl | 56 ++++++++++++++++++++++++++++++++++++------ core/src/util.jl | 2 +- core/src/validation.jl | 11 +++++++++ 7 files changed, 67 insertions(+), 27 deletions(-) diff --git a/core/src/Ribasim.jl b/core/src/Ribasim.jl index 6d6128bb8..f8d027f63 100644 --- a/core/src/Ribasim.jl +++ b/core/src/Ribasim.jl @@ -56,6 +56,7 @@ using SciMLBase: solve!, step!, SciMLBase, + ReturnCode, successful_retcode, CallbackSet, ODEFunction, diff --git a/core/src/bmi.jl b/core/src/bmi.jl index 6595e6390..d598722f8 100644 --- a/core/src/bmi.jl +++ b/core/src/bmi.jl @@ -17,16 +17,15 @@ function BMI.update(model::Model)::Model return model end -function BMI.update_until(model::Model, time)::Model - integrator = model.integrator - t = integrator.t +function BMI.update_until(model::Model, time::Float64)::Model + (; t) = model.integrator dt = time - t if dt < 0 error("The model has already passed the given timestamp.") elseif dt == 0 return model else - step!(integrator, dt, true) + step!(model, dt) end return model end diff --git a/core/src/callback.jl b/core/src/callback.jl index bd94043a5..242c1eafa 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -51,16 +51,6 @@ function create_callbacks( ) push!(callbacks, tabulated_rating_curve_cb) - if config.allocation.use_allocation - allocation_cb = PeriodicCallback( - update_allocation!, - config.allocation.timestep; - initial_affect = false, - save_positions = (false, false), - ) - push!(callbacks, allocation_cb) - end - # If saveat is a vector which contains 0.0 this callback will still be called # at t = 0.0 despite save_start = false saveat = saveat isa Vector ? filter(x -> x != 0.0, saveat) : saveat diff --git a/core/src/main.jl b/core/src/main.jl index 78d4823ad..1e75e721f 100644 --- a/core/src/main.jl +++ b/core/src/main.jl @@ -54,8 +54,7 @@ function main(ARGS::Vector{String})::Cint config = Config(arg) mkpath(results_path(config, ".")) open(results_path(config, "ribasim.log"), "w") do io - logger = - Ribasim.setup_logger(; verbosity = config.logging.verbosity, stream = io) + logger = setup_logger(; verbosity = config.logging.verbosity, stream = io) with_logger(logger) do cli = (; ribasim_version = string(pkgversion(Ribasim))) (; starttime, endtime) = config @@ -63,13 +62,13 @@ function main(ARGS::Vector{String})::Cint @warn "The Ribasim version in the TOML config file does not match the used Ribasim CLI version." config.ribasim_version cli.ribasim_version end @info "Starting a Ribasim simulation." cli.ribasim_version starttime endtime - model = Ribasim.run(config) + model = run(config) if successful_retcode(model) @info "The model finished successfully" return 0 end - t = Ribasim.datetime_since(model.integrator.t, starttime) + t = datetime_since(model.integrator.t, starttime) retcode = model.integrator.sol.retcode @error "The model exited at model time $t with return code $retcode.\nSee https://docs.sciml.ai/DiffEqDocs/stable/basics/solution/#retcodes" return 1 diff --git a/core/src/model.jl b/core/src/model.jl index 241ba2ec6..7ac16aea1 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -29,6 +29,9 @@ end function Model(config_path::AbstractString)::Model config = Config(config_path) + if !valid_config(config) + error("Invalid configuration in TOML.") + end return Model(config) end @@ -44,11 +47,6 @@ function Model(config::Config)::Model TimerOutputs.enable_debug_timings(Ribasim) # causes recompilation (!) end - t_end = seconds_since(config.endtime, config.starttime) - if t_end <= 0 - error("Model starttime is not before endtime.") - end - # All data from the database that we need during runtime is copied into memory, # so we can directly close it again. db = SQLite.DB(db_path) @@ -114,6 +112,7 @@ function Model(config::Config)::Model integral = zeros(length(parameters.pid_control.node_id)) u0 = ComponentVector{Float64}(; storage, integral) # for Float32 this method allows max ~1000 year simulations without accuracy issues + t_end = seconds_since(config.endtime, config.starttime) @assert eps(t_end) < 3600 "Simulation time too long" t0 = zero(t_end) timespan = (t0, t_end) @@ -188,10 +187,51 @@ function SciMLBase.successful_retcode(model::Model)::Bool end """ - solve!(model::Model)::ODESolution + step!(model::Model, dt::Float64)::Model + +Take Model timesteps until `t + dt` is reached exactly. +""" +function SciMLBase.step!(model::Model, dt::Float64)::Model + (; config, integrator) = model + (; t) = integrator + # If we are at an allocation time, run allocation before the next physical + # layer timestep. This allows allocation over period (t, t + dt) to use variables + # set over BMI at time t before calling this function. + # Also, don't run allocation at t = 0 since there are no flows yet (#1389). + ntimes = t / config.allocation.timestep + if t > 0 && round(ntimes) ≈ ntimes + update_allocation!(integrator) + end + step!(integrator, dt, true) + return model +end + +""" + solve!(model::Model)::Model Solve a Model until the configured `endtime`. """ -function SciMLBase.solve!(model::Model)::ODESolution - return solve!(model.integrator) +function SciMLBase.solve!(model::Model)::Model + (; config, integrator) = model + if config.allocation.use_allocation + (; tspan) = integrator.sol.prob + (; timestep) = config.allocation + allocation_times = timestep:timestep:(tspan[end] - timestep) + n_allocation_times = length(allocation_times) + # Don't run allocation at t = 0 since there are no flows yet (#1389). + step!(integrator, timestep, true) + for _ in 1:n_allocation_times + update_allocation!(integrator) + step!(integrator, timestep, true) + end + + if integrator.sol.retcode != ReturnCode.Default + return model + end + # TODO replace with `check_error!` https://github.com/SciML/SciMLBase.jl/issues/669 + integrator.sol = SciMLBase.solution_new_retcode(integrator.sol, ReturnCode.Success) + else + solve!(integrator) + end + return model end diff --git a/core/src/util.jl b/core/src/util.jl index 9f28670cf..46a3643b9 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -683,7 +683,7 @@ function get_Δt(integrator)::Float64 elseif isinf(saveat) t else - t_end = integrator.sol.prob.tspan[2] + t_end = integrator.sol.prob.tspan[end] if t_end - t > saveat saveat else diff --git a/core/src/validation.jl b/core/src/validation.jl index 202eec6a8..72fcb55ff 100644 --- a/core/src/validation.jl +++ b/core/src/validation.jl @@ -146,6 +146,17 @@ function sorted_table!( return table end +function valid_config(config::Config)::Bool + errors = false + + if config.starttime >= config.endtime + errors = true + @error "The model starttime must be before the endtime." + end + + return !errors +end + """ Test for each node given its node type whether the nodes that # are downstream ('down-edge') of this node are of an allowed type From 2a1adc3a66fe64d39450b70b748d42b1e9a7f596 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 14:06:39 +0200 Subject: [PATCH 098/158] TeamCity change in 'Ribasim / Linux' project: 'Os' build template was moved to 'Ribasim' project --- .../{Ribasim_Linux => Ribasim}/buildTypes/Ribasim_Linux_Os.xml | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename .teamcity/{Ribasim_Linux => Ribasim}/buildTypes/Ribasim_Linux_Os.xml (100%) diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml b/.teamcity/Ribasim/buildTypes/Ribasim_Linux_Os.xml similarity index 100% rename from .teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_Os.xml rename to .teamcity/Ribasim/buildTypes/Ribasim_Linux_Os.xml From d6c1a40cde5407cf47f02366a76e2abfd37108f6 Mon Sep 17 00:00:00 2001 From: feng Date: Tue, 16 Apr 2024 14:07:20 +0200 Subject: [PATCH 099/158] TeamCity change in 'Ribasim' project: general settings of 'Linux' build template were updated --- .../buildTypes/{Ribasim_Linux_Os.xml => Ribasim_Linux.xml} | 2 +- .../Ribasim_Linux/buildTypes/Ribasim_Linux_BuildLibribasim.xml | 2 +- .../Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasimCli.xml | 2 +- .../Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimApi.xml | 2 +- .../Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimCli.xml | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) rename .teamcity/Ribasim/buildTypes/{Ribasim_Linux_Os.xml => Ribasim_Linux.xml} (97%) diff --git a/.teamcity/Ribasim/buildTypes/Ribasim_Linux_Os.xml b/.teamcity/Ribasim/buildTypes/Ribasim_Linux.xml similarity index 97% rename from .teamcity/Ribasim/buildTypes/Ribasim_Linux_Os.xml rename to .teamcity/Ribasim/buildTypes/Ribasim_Linux.xml index 5e73b1d7a..901a95ae3 100644 --- a/.teamcity/Ribasim/buildTypes/Ribasim_Linux_Os.xml +++ b/.teamcity/Ribasim/buildTypes/Ribasim_Linux.xml @@ -1,6 +1,6 @@