diff --git a/Manifest.toml b/Manifest.toml index ecc7f7b59..d03ba3a69 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.5" manifest_format = "2.0" -project_hash = "75c4e53353e65364a0312414f29d1fc1b1339d28" +project_hash = "d694251e41cfe037d14e0d129b2e2e49035c0990" [[deps.ADTypes]] git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0" @@ -67,9 +67,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" +git-tree-sha1 = "3640d077b6dafd64ceb8fd5c1ec76f7ca53bcf76" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.15.0" +version = "7.16.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -107,9 +107,9 @@ weakdeps = ["SparseArrays"] [[deps.Arrow]] deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "LoggingExtras", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "f8d411d1b45459368567dc51f683ed78a919d795" +git-tree-sha1 = "4ece4573f169d64b1508b0c8dd38c7919ae7a907" uuid = "69666777-d1a9-59fb-9406-91d4454c9d45" -version = "2.7.2" +version = "2.7.3" [[deps.ArrowTypes]] deps = ["Sockets", "UUIDs"] @@ -298,17 +298,18 @@ uuid = "5218b696-f38b-4ac9-8b61-a12ec717816d" version = "0.17.6" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "a33b7ced222c6165f624a3f2b55945fac5a598d9" +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.7" +version = "1.5.8" [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [deps.ConstructionBase.weakdeps] IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.CpuId]] @@ -373,10 +374,10 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "4cb796ab54311147b9c7191d34d502693b603a22" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "d7d43a1cc11dc4e4e5378816ae720fccd75a77c8" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.154.0" +version = "6.155.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -408,12 +409,13 @@ version = "6.154.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "befc86364d9b36abc6d874f91ab5d7b4d5e6bb62" +git-tree-sha1 = "19dbd44d18bbfdfcf5e56c99cea9b0ed23df350a" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.8.0" +version = "3.9.1" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.DiffResults]] @@ -430,9 +432,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "e53e4eb7f8e7b25656ea17263b0c22f129091eeb" +git-tree-sha1 = "9b23f9a816790b8ab9914c3c86321a546e92cbe7" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.15" +version = "0.5.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -542,9 +544,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "fd0002c0b5362d7eb952450ad5eb742443340d6e" +git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.12.0" +version = "1.13.0" [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" @@ -682,10 +684,10 @@ weakdeps = ["ArrowTypes", "Parsers"] ParsersExt = "Parsers" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "14eb2b542e748570b56446f4c50fbfb2306ebc45" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.2.0+0" +version = "2024.2.1+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -723,15 +725,15 @@ version = "1.0.0" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] -git-tree-sha1 = "049950edff105ff73918d29dbf109220ff364157" +git-tree-sha1 = "a0746c21bdc986d0dc293efa6b1faee112c37c28" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.52" +version = "0.4.53" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "f389674c99bfcde17dc57454011aa44d5a260a40" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.6.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -751,9 +753,9 @@ weakdeps = ["ArrowTypes"] [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] -git-tree-sha1 = "1171edaad5873df2c93808fb13fd6f87de6510fd" +git-tree-sha1 = "82bc707a67639be45ec9abf3a7640af19c4172fe" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.23.0" +version = "1.23.1" [deps.JuMP.extensions] JuMPDimensionalDataExt = "DimensionalData" @@ -792,9 +794,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "507b423197fdd9e77b74aa2532c0a05eb7eb4004" +git-tree-sha1 = "360f6039babd6e4d6364eff0d4fc9120834a2d9a" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.2.0" +version = "2.2.1" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -820,9 +822,9 @@ version = "0.2.0" [[deps.Legolas]] deps = ["Arrow", "ArrowTypes", "Tables", "UUIDs"] -git-tree-sha1 = "94f8396af46adf571f6d20f97fd0aa75314b2bca" +git-tree-sha1 = "d02f53055c6e88df61de357cdaeef05a71784d84" uuid = "741b9549-f6ed-4911-9fbf-4a1c0c97f0cd" -version = "0.5.20" +version = "0.5.21" weakdeps = ["ConstructionBase"] [deps.Legolas.extensions] @@ -866,10 +868,10 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "6b7011b27e35453f68a8f851776271b31fce021c" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "6c5e4555ac2bc449a28604e184f759d18fc08420" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.33.0" +version = "2.34.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -984,9 +986,9 @@ version = "1.1.0" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "c0fe113e9c72aa0c9a185fd3c5ca1daa51de1486" +git-tree-sha1 = "5b246fca5420ae176d65ed43a2d0ee5897775216" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.31.1" +version = "1.31.2" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1125,15 +1127,15 @@ version = "1.6.3" [[deps.OrdinaryDiffEqBDF]] deps = ["ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "9fbf064774890313ab0b95bc2a450913c123e22a" +git-tree-sha1 = "b4498d40bf35da0b6d22652ff2e9d8820590b3c6" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.1.0" +version = "1.1.2" [[deps.OrdinaryDiffEqCore]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "TruncatedStacktraces"] -git-tree-sha1 = "880ebdd92ba7994b9a836c8e95ee31c44e97dd21" +git-tree-sha1 = "35fdf60f6b5e283ea2292d3f1c57abce6175c406" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.3.0" +version = "1.5.1" weakdeps = ["EnzymeCore"] [deps.OrdinaryDiffEqCore.extensions] @@ -1147,21 +1149,21 @@ version = "1.1.0" [[deps.OrdinaryDiffEqLowOrderRK]] deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "1938fd639ae6688a46d606a5435e523dfdd80776" +git-tree-sha1 = "d4bb32e09d6b68ce2eb45fb81001eab46f60717a" uuid = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "StaticArrays"] -git-tree-sha1 = "dab59b48708c15b0713d131759309c98ec9bac07" +git-tree-sha1 = "a2a4119f3e35f7982f78e17beea7b12485d179e9" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.1.0" +version = "1.2.1" [[deps.OrdinaryDiffEqRosenbrock]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static"] -git-tree-sha1 = "920b52bef5ee155127727609033696920bb88e56" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static"] +git-tree-sha1 = "96b47cdd12cb4ce8f70d701b49f855271a462bd4" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqSDIRK]] deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] @@ -1389,9 +1391,9 @@ version = "3.45.3+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "92d9aa6fc3c273933c9e55e04868fbe77416ee75" +git-tree-sha1 = "952e09c65264fe2a8155dd6aad60c188a0b83f69" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.50.5" +version = "2.53.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1425,9 +1427,9 @@ weakdeps = ["SparseArrays", "StaticArraysCore"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" +git-tree-sha1 = "25514a6f200219cd1073e4ff23a6324e4a7efe64" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.2" +version = "1.5.0" [[deps.Scratch]] deps = ["Dates"] @@ -1505,9 +1507,9 @@ version = "1.10.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "Requires", "SparseArrays"] -git-tree-sha1 = "b1394f6661cc11728a9b8827c001eeb515656f71" +git-tree-sha1 = "5cecac368ad938c6fed636c8e28d206291c84b50" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.3" +version = "0.6.4" [deps.SparseConnectivityTracer.extensions] SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" @@ -1641,9 +1643,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "c9fce29fb41a10677e24f74421ebe31220b81ad0" +git-tree-sha1 = "988e04b34a4c3b824fb656f542473df99a4f610d" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.28" +version = "0.3.30" [[deps.TOML]] deps = ["Dates"] @@ -1652,9 +1654,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "1607ad46cf8d642aa779a1d45af1c8620dbf6915" +git-tree-sha1 = "36b40607bf2bf856828690e097e1c799623b0602" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.2.0+2024a" +version = "1.3.0+2024b" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1708,9 +1710,9 @@ version = "0.5.2" [[deps.TimeZones]] deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "b92aebdd3555f3a7e3267cf17702033c2814ef48" +git-tree-sha1 = "8323074bc977aa85cf5ad71099a83ac75b0ac107" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.18.0" +version = "1.18.1" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] @@ -1723,13 +1725,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.24" [[deps.TranscodingStreams]] -git-tree-sha1 = "d73336d81cafdc277ff45558bb7eaa2b04a8e472" +git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.10" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] +version = "0.11.2" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]