diff --git a/.github/workflows/core_testmodels.yml b/.github/workflows/core_testmodels.yml index 9679cbbf8..ba0590572 100644 --- a/.github/workflows/core_testmodels.yml +++ b/.github/workflows/core_testmodels.yml @@ -29,15 +29,15 @@ jobs: - x64 steps: - uses: actions/checkout@v4 - - uses: julia-actions/cache@v1 + - uses: julia-actions/cache@v2 with: cache-compiled: "true" cache-registries: "true" - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - name: Prepare pixi - run: pixi run --environment=dev install-ci + run: pixi run install-ci - name: Run testmodels with Ribasim Core run: | pixi run ribasim-core-testmodels diff --git a/.github/workflows/core_tests.yml b/.github/workflows/core_tests.yml index 2ba330004..b150dee9c 100644 --- a/.github/workflows/core_tests.yml +++ b/.github/workflows/core_tests.yml @@ -29,15 +29,13 @@ jobs: - x64 steps: - uses: actions/checkout@v4 - - uses: julia-actions/cache@v1 + - uses: julia-actions/cache@v2 with: cache-compiled: "true" cache-registries: "true" - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - - name: Prepare pixi - run: pixi run --environment=dev install-ci - name: Test Ribasim Core run: | pixi run test-ribasim-core-cov diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index ccd50d8e5..ce25d79df 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -20,22 +20,19 @@ jobs: contents: write steps: - uses: actions/checkout@v4 - - uses: julia-actions/cache@v1 + - uses: julia-actions/cache@v2 with: cache-compiled: "true" cache-registries: "true" - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - name: Prepare pixi - run: pixi run --environment=dev install-ci + run: pixi run install-ci - name: Check Quarto installation and all engines run: pixi run quarto-check - - name: Generate Julia docs - run: pixi run build-julia-docs - - name: Render Quarto Project run: pixi run quarto-render diff --git a/.github/workflows/julia_auto_update.yml b/.github/workflows/julia_auto_update.yml index 3bfd87d37..e30377793 100644 --- a/.github/workflows/julia_auto_update.yml +++ b/.github/workflows/julia_auto_update.yml @@ -14,7 +14,7 @@ jobs: - uses: actions/checkout@v4 with: ssh-key: ${{ secrets.SSH_PRIVATE_KEY }} - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - name: Update Julia manifest file diff --git a/.github/workflows/mypy.yml b/.github/workflows/mypy.yml index e20da5c90..408906e29 100644 --- a/.github/workflows/mypy.yml +++ b/.github/workflows/mypy.yml @@ -16,11 +16,9 @@ jobs: continue-on-error: true steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - - name: Prepare pixi - run: pixi run --environment=dev install-ci - name: Run mypy on python/ribasim run: | pixi run mypy-ribasim-python diff --git a/.github/workflows/pixi_auto_update.yml b/.github/workflows/pixi_auto_update.yml index 9c3ee9e42..20473f726 100644 --- a/.github/workflows/pixi_auto_update.yml +++ b/.github/workflows/pixi_auto_update.yml @@ -14,7 +14,7 @@ jobs: - uses: actions/checkout@v4 with: ssh-key: ${{ secrets.SSH_PRIVATE_KEY }} - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" cache: false diff --git a/.github/workflows/python_codegen.yml b/.github/workflows/python_codegen.yml index c14cbbd9f..a008f6b6d 100644 --- a/.github/workflows/python_codegen.yml +++ b/.github/workflows/python_codegen.yml @@ -16,11 +16,9 @@ jobs: continue-on-error: true steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - - name: Prepare pixi - run: pixi run --environment=dev install-ci - name: Test if codegen runs without errors run: pixi run codegen - name: Ensure that no code has been generated diff --git a/.github/workflows/python_tests.yml b/.github/workflows/python_tests.yml index 6546b815f..083529b69 100644 --- a/.github/workflows/python_tests.yml +++ b/.github/workflows/python_tests.yml @@ -26,11 +26,9 @@ jobs: - py310 steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - - name: Prepare pixi - run: pixi run --environment ${{ matrix.pixi-environment }} install-python - name: Test Ribasim Python run: pixi run --environment ${{ matrix.pixi-environment }} test-ribasim-python-cov - name: Upload coverage to Codecov diff --git a/.github/workflows/qgis.yml b/.github/workflows/qgis.yml index 6130f4dd5..6412d87fa 100644 --- a/.github/workflows/qgis.yml +++ b/.github/workflows/qgis.yml @@ -22,12 +22,9 @@ jobs: - windows-latest steps: - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.6.0 + - uses: prefix-dev/setup-pixi@v0.7.0 with: pixi-version: "latest" - - name: Prepare pixi - run: | - pixi run --environment=dev install-ci - name: Run tests run: pixi run test-ribasim-qgis-cov - name: Upload coverage to Codecov diff --git a/.gitignore b/.gitignore index 5e8b06ffc..7e2d4e441 100644 --- a/.gitignore +++ b/.gitignore @@ -5,10 +5,6 @@ # Files generated by invoking Julia with --track-allocation *.jl.mem -# Build artifacts for creating documentation generated by the Documenter package -docs/build/ -docs/site/ - /generated_testmodels build/ribasim/ build/cli/target diff --git a/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml b/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml index c2945c1aa..9f64c0526 100644 --- a/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml +++ b/.teamcity/Ribasim/buildTypes/Ribasim_GenerateTestmodels.xml @@ -18,8 +18,7 @@ source /usr/share/Modules/init/bash module load pixi -pixi --version -pixi run --environment=dev install-ci]]> +pixi --version]]> @@ -56,3 +55,4 @@ pixi run generate-testmodels]]> + diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasim.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasim.xml index d47affbe6..6a5089043 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasim.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_BuildRibasim.xml @@ -17,7 +17,7 @@ source /usr/share/Modules/init/bash module load pixi pixi --version -pixi run --environment=dev install-ci]]> +pixi run install-ci]]> diff --git a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimBinaries.xml b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimBinaries.xml index a49348465..44609f6b8 100644 --- a/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimBinaries.xml +++ b/.teamcity/Ribasim_Linux/buildTypes/Ribasim_Linux_TestRibasimBinaries.xml @@ -16,8 +16,7 @@ source /usr/share/Modules/init/bash module load pixi -pixi --version -pixi run install-python]]> +pixi --version]]> @@ -30,7 +29,7 @@ pixi run install-python]]> source /usr/share/Modules/init/bash module load pixi -pixi run --environment=dev install +pixi run install pixi run test-ribasim-api pixi run test-ribasim-cli]]> diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasim.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasim.xml index 9e8740b03..0a409a041 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasim.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_BuildRibasim.xml @@ -16,7 +16,7 @@ +pixi run install-ci]]> diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestDelwaqCoupling.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestDelwaqCoupling.xml new file mode 100644 index 000000000..e7ba6b072 --- /dev/null +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestDelwaqCoupling.xml @@ -0,0 +1,67 @@ + + + Test Delwaq coupling + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimBinaries.xml b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimBinaries.xml index 23a1e8ca0..a39b5dd43 100644 --- a/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimBinaries.xml +++ b/.teamcity/Ribasim_Windows/buildTypes/Ribasim_Windows_TestRibasimBinaries.xml @@ -10,7 +10,7 @@ - + @@ -18,7 +18,7 @@ - diff --git a/Manifest.toml b/Manifest.toml index 36627e1b5..55530aa4e 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.0" +julia_version = "1.10.3" manifest_format = "2.0" project_hash = "045162196d64ccb59bdab2af0422fde0b0e83c77" @@ -9,11 +9,6 @@ git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" version = "0.2.7" -[[deps.ANSIColoredPrinters]] -git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" -uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" -version = "0.0.1" - [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -61,20 +56,21 @@ version = "1.1.1" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.2.0" +version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "44691067188f6bd1b2289552a23e4b7572f4528d" +git-tree-sha1 = "133a240faec6e074e07c31ee75619c90544179cf" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.9.0" +version = "7.10.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" @@ -85,6 +81,7 @@ version = "7.9.0" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -93,9 +90,9 @@ version = "7.9.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "6404a564c24a994814106c374bec893195e19bac" +git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.8.0" +version = "1.9.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -103,9 +100,9 @@ weakdeps = ["SparseArrays"] [[deps.Arrow]] deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "LoggingExtras", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "29faa9835f77dee04b2833b2c9ee415223b3ebbd" +git-tree-sha1 = "f8d411d1b45459368567dc51f683ed78a919d795" uuid = "69666777-d1a9-59fb-9406-91d4454c9d45" -version = "2.7.1" +version = "2.7.2" [[deps.ArrowTypes]] deps = ["Sockets", "UUIDs"] @@ -213,9 +210,9 @@ version = "0.3.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" +git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.14.0" +version = "4.15.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -224,7 +221,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+1" +version = "1.1.1+0" [[deps.ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] @@ -330,29 +327,28 @@ uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" version = "1.6.1" [[deps.DataInterpolations]] -deps = ["FindFirstFunctions", "LinearAlgebra", "PrettyTables", "RecipesBase", "Reexport"] -git-tree-sha1 = "e31c460739fb1beb9d84cc851b670b43ef493fda" +deps = ["FindFirstFunctions", "ForwardDiff", "LinearAlgebra", "PrettyTables", "RecipesBase", "Reexport"] +git-tree-sha1 = "b580ef00ec248aeb137b4ef3a4f751a567d35556" uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -version = "4.7.1" +version = "5.0.0" [deps.DataInterpolations.extensions] DataInterpolationsChainRulesCoreExt = "ChainRulesCore" - DataInterpolationsOptimExt = ["ForwardDiff", "Optim"] + DataInterpolationsOptimExt = "Optim" DataInterpolationsRegularizationToolsExt = "RegularizationTools" DataInterpolationsSymbolicsExt = "Symbolics" [deps.DataInterpolations.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Optim = "429524aa-4258-5aef-a3af-852621145aeb" RegularizationTools = "29dad682-9a27-4bc3-9c72-016788665182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "0f4b5d62a88d8f59003e43c25a8a90de9eb76317" +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.18" +version = "0.18.20" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -365,15 +361,15 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.Dictionaries]] deps = ["Indexing", "Random", "Serialization"] -git-tree-sha1 = "573c92ef22ee0783bfaa4007c732b044c791bc6d" +git-tree-sha1 = "35b66b6744b2d92c778afd3a88d2571875664a2a" uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" -version = "0.4.1" +version = "0.4.2" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "4fa023dbb15b3485426bbc6c43e030c14250d664" +git-tree-sha1 = "c8b0bdee28a1addddb7ab939365fe6543d7d2d0d" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.149.0" +version = "6.149.2" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -401,9 +397,9 @@ version = "6.149.0" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "173d6a313878635b6c764163f639ac2d5f201fdc" +git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.0" +version = "3.6.2" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -436,18 +432,6 @@ git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.3" -[[deps.Documenter]] -deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67" -uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.27.25" - -[[deps.DocumenterMarkdown]] -deps = ["Documenter"] -git-tree-sha1 = "9af057a98652336e30586d8092fac06f8b28ecdc" -uuid = "997ab1e6-3595-5248-9280-8efb232c3433" -version = "0.2.2" - [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" @@ -496,9 +480,9 @@ version = "0.3.2" [[deps.FastLapackInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "0a59c7d1002f3131de53dc4568a47d15a44daef7" +git-tree-sha1 = "f4102aab9c7df8691ed09f9c42e34f5ab5458ab9" uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.2" +version = "2.0.3" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] @@ -510,10 +494,10 @@ version = "1.16.3" uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" +deps = ["LinearAlgebra"] +git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.9.3" +version = "1.11.0" [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" @@ -532,9 +516,9 @@ version = "1.2.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "bc0c5092d6caaea112d3c8e3b238d61563c58d5f" +git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.0" +version = "2.23.1" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -569,9 +553,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8ae30e786837ce0a24f5e2186938bf3251ab94b2" +git-tree-sha1 = "d3e63d9fa13f8eaa2f06f64949e2afc593ff52c2" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.8" +version = "0.4.10" [[deps.Future]] deps = ["Random"] @@ -596,9 +580,9 @@ version = "1.3.1" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" +git-tree-sha1 = "4f2b57488ac7ee16124396de4f2bbdd51b2602ad" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.9.0" +version = "1.11.0" [[deps.HiGHS]] deps = ["HiGHS_jll", "MathOptInterface", "PrecompileTools", "SparseArrays"] @@ -642,9 +626,9 @@ version = "1.1.1" [[deps.Infiltrator]] deps = ["InteractiveUtils", "Markdown", "REPL", "UUIDs"] -git-tree-sha1 = "838a8df6dd9ce18565fac062f6346b0a1fca5609" +git-tree-sha1 = "663ecbf362df6a7775bbb56b4bddcea0b291cb01" uuid = "5903a43b-9cc3-4c30-8d17-598619ec4e9b" -version = "1.7.0" +version = "1.8.2" [[deps.Inflate]] git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" @@ -659,9 +643,9 @@ version = "1.4.0" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" +git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.0.2+0" +version = "2024.1.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -669,9 +653,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.InverseFunctions]] deps = ["Test"] -git-tree-sha1 = "896385798a8d49a255c398bd49162062e4a4c435" +git-tree-sha1 = "e7cbed5032c4c397a6ac23d1493f3289e01231c4" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.13" +version = "0.1.14" weakdeps = ["Dates"] [deps.InverseFunctions.extensions] @@ -727,9 +711,9 @@ weakdeps = ["ArrowTypes"] [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] -git-tree-sha1 = "a39e8a1828f8ca4de035cca341979f4d0dbc6eae" +git-tree-sha1 = "07385c772da34d91fc55d6c704b6224302082ba0" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.21.0" +version = "1.21.1" [deps.JuMP.extensions] JuMPDimensionalDataExt = "DimensionalData" @@ -751,9 +735,9 @@ version = "0.6.0" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "8a6837ec02fe5fb3def1abc907bb802ef11a0729" +git-tree-sha1 = "267dad6b4b7b5d529c76d40ff48d33f7e94cb834" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.5" +version = "0.9.6" [[deps.LaTeXStrings]] git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" @@ -768,9 +752,9 @@ version = "0.1.15" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] -git-tree-sha1 = "9cfca23ab83b0dfac93cb1a1ef3331ab9fe596a5" +git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "1.8.3" +version = "1.10.0" weakdeps = ["StaticArrays"] [deps.LazyArrays.extensions] @@ -831,14 +815,15 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "775e5e5d9ace42ef8deeb236587abc69e70dc455" +git-tree-sha1 = "c55172df0d19b34db93c410cfcd79dbc3e52ba6f" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.28.0" +version = "2.29.1" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" + LinearSolveCUDSSExt = "CUDSS" LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] LinearSolveHYPREExt = "HYPRE" @@ -853,6 +838,7 @@ version = "2.28.0" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" @@ -891,9 +877,9 @@ version = "1.0.3" [[deps.LoopVectorization]] deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "a13f3be5d84b9c95465d743c82af0b094ef9c2e2" +git-tree-sha1 = "8f6786d8b2b3248d79db3ad359ce95382d5a6df8" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.169" +version = "0.12.170" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -913,10 +899,10 @@ uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" version = "1.9.4+0" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.0.0+0" +version = "2024.1.0+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -941,15 +927,15 @@ version = "1.1.0" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "d268e82322cc5df142a3664d03d59adecd53abf9" +git-tree-sha1 = "9cc5acd6b76174da7503d1de3a6f8cf639b6e5cb" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.27.1" +version = "1.29.0" [[deps.MatrixFactorizations]] deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "78f6e33434939b0ac9ba1df81e6d005ee85a7396" +git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "2.1.0" +version = "2.2.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] @@ -976,18 +962,18 @@ version = "0.7.0" [[deps.Missings]] deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" +version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.Mocking]] deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" +git-tree-sha1 = "bf17d9cb4f0d2882351dfad030598f64286e5936" uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" +version = "0.7.8" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" @@ -1000,9 +986,9 @@ version = "0.2.4" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "2d106538aebe1c165e16d277914e10c550e9d9b7" +git-tree-sha1 = "a3589efe0005fc4718775d8641b2de9060d23f73" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.4.2" +version = "1.4.4" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1021,10 +1007,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "TimerOutputs"] -git-tree-sha1 = "c32743c2321e99adf8bbe03145ce8e2bf2fcfbf9" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "4891b745bd621f88aac661f2504d014931b443ba" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.9.0" +version = "3.10.0" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -1053,9 +1039,9 @@ version = "3.9.0" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.OffsetArrays]] -git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" +git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.13.0" +version = "1.14.0" weakdeps = ["Adapt"] [deps.OffsetArrays.extensions] @@ -1064,7 +1050,7 @@ weakdeps = ["Adapt"] [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+2" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1084,9 +1070,9 @@ version = "1.6.3" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "91079af18db922354197eeae2a17b177079e24c1" +git-tree-sha1 = "cd8c4fb1cc88e65e27f92c7e714afc430cd1debc" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.74.1" +version = "6.75.0" [[deps.OteraEngine]] deps = ["Markdown", "Pkg", "TOML"] @@ -1125,9 +1111,9 @@ version = "1.10.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "09f59c6dda37c7f73efddc5bdf6f92bc940eb484" +git-tree-sha1 = "2ba5f33cbb51a85ef58a850749492b08f9bf2193" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.12" +version = "0.7.13" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1143,9 +1129,9 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "b6665214f2d0739f2d09a17474dd443b9139784a" +git-tree-sha1 = "a660e9daab5db07adf3dedfe09b435cc530d855e" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.20" +version = "0.4.21" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -1207,9 +1193,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d8f131090f2e44b145084928856a561c83f43b27" +git-tree-sha1 = "f599a896fb28043dd63a4d372231dfcbdd117394" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.13.0" +version = "3.16.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -1231,9 +1217,9 @@ version = "3.13.0" [[deps.RecursiveFactorization]] deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed" +git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.21" +version = "0.2.23" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1262,13 +1248,13 @@ version = "3.5.14" deps = ["Accessors", "Arrow", "BasicModelInterface", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "Dictionaries", "DiffEqCallbacks", "EnumX", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "LinearSolve", "Logging", "LoggingExtras", "MetaGraphsNext", "OrdinaryDiffEq", "PreallocationTools", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimerOutputs", "TranscodingStreams"] path = "core" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" -version = "2024.7.0" +version = "2024.8.0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.12" +version = "0.5.13" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1299,9 +1285,9 @@ version = "3.45.0+0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d15c65e25615272e1b1c5edb1d307484c7942824" +git-tree-sha1 = "397367599b9526a49cc06a4db70835807498b561" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.31.0" +version = "2.36.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1360,9 +1346,9 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "d4c17fc60bf5f8f2be02777c4836878f27ac7b9b" +git-tree-sha1 = "c020028bb22a2f23cbd88cb92cf47cbb8c98513f" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.7.0" +version = "1.8.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1413,9 +1399,9 @@ version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "a616ac46c38da60ac05cecf52064d44732edd05e" +git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.17.0" +version = "2.18.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1439,9 +1425,9 @@ version = "0.3.9" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" +git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" +version = "2.4.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1486,10 +1472,10 @@ uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" version = "1.10.0" [[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "d6415f66f3d89c615929af907fdc6a3e17af0d8c" +deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] +git-tree-sha1 = "25349bf8f63aa36acbff5e3550a86e9f5b0ef682" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.2" +version = "0.5.6" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1526,10 +1512,10 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["Accessors", "ArrayInterface", "MacroTools", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "4b7f4c80449d8baae8857d55535033981862619c" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "b479c7a16803f08779ac5b7f9844a42621baeeda" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.15" +version = "0.3.21" [[deps.TOML]] deps = ["Dates"] @@ -1538,9 +1524,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb" +git-tree-sha1 = "1607ad46cf8d642aa779a1d45af1c8620dbf6915" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.1.0+2023d" +version = "1.2.0+2024a" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1598,9 +1584,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.23" [[deps.TranscodingStreams]] -git-tree-sha1 = "71509f04d045ec714c4748c785a59045c3736349" +git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.10.7" +version = "0.10.8" weakdeps = ["Random", "Test"] [deps.TranscodingStreams.extensions] @@ -1608,9 +1594,9 @@ weakdeps = ["Random", "Test"] [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "7ee8ed8904e7dd5d31bb46294ef5644d9e2e44e4" +git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.21" +version = "0.2.0" [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" @@ -1637,9 +1623,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85" +git-tree-sha1 = "6129a4faf6242e7c3581116fbe3270f3ab17c90d" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.65" +version = "0.21.67" [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" @@ -1697,6 +1683,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" version = "1.52.0+1" +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" diff --git a/Project.toml b/Project.toml index 3b2e47a5b..2806fc473 100644 --- a/Project.toml +++ b/Project.toml @@ -17,8 +17,6 @@ DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" Dictionaries = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" -Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -DocumenterMarkdown = "997ab1e6-3595-5248-9280-8efb232c3433" EnumX = "4e289a0a-7415-4d19-859d-a7e5c4648b56" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -26,6 +24,7 @@ Glob = "c27321d9-0574-5035-807b-f59d2c89b15c" Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6" HiGHS = "87dc4568-4c63-4d18-b0c0-bb2238e4078b" IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" +IOCapture = "b5f81e59-6552-4d32-b1f0-c071b021bf89" Infiltrator = "5903a43b-9cc3-4c30-8d17-598619ec4e9b" InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240" IterTools = "c8e1da08-722c-5040-9ed9-7db0dc04731e" diff --git a/build/build.jl b/build/build.jl index d22918d66..6161689b0 100644 --- a/build/build.jl +++ b/build/build.jl @@ -68,6 +68,18 @@ function main() cp("cli/target/release/$ribasim", "ribasim/$ribasim"; force = true) end +function set_version(filename, version; group = nothing) + data = TOML.parsefile(filename) + if !isnothing(group) + data[group]["version"] = version + else + data["version"] = version + end + open(filename, "w") do io + TOML.print(io, data) + end +end + """ Add the following metadata files to the newly created build: @@ -99,33 +111,36 @@ function add_metadata(project_dir, license_file, output_dir, git_repo, readme) force = true, ) + # since the exact Ribasim version may be hard to find in the Manifest.toml file + # we can also extract that information, and add it to the README.md + manifest = TOML.parsefile(normpath(git_repo, "Manifest.toml")) + if !haskey(manifest, "manifest_format") + error("Manifest.toml is in the old format, run Pkg.upgrade_manifest()") + end + julia_version = manifest["julia_version"] + ribasim_entry = only(manifest["deps"]["Ribasim"]) + version = ribasim_entry["version"] + repo = GitRepo(git_repo) + branch = LibGit2.head(repo) + commit = LibGit2.peel(LibGit2.GitCommit, branch) + short_name = LibGit2.shortname(branch) + short_commit = string(LibGit2.GitShortHash(LibGit2.GitHash(commit), 10)) + + # get the release from the current tag, like `git describe --tags` + # if it is a commit after a tag, it will be -g + options = LibGit2.DescribeOptions(; describe_strategy = LibGit2.Consts.DESCRIBE_TAGS) + result = LibGit2.GitDescribeResult(repo; options) + suffix = "-dirty" + foptions = + LibGit2.DescribeFormatOptions(; dirty_suffix = Base.unsafe_convert(Cstring, suffix)) + GC.@preserve suffix tag = LibGit2.format(result; options = foptions)[2:end] # skip v prefix + # put the LICENSE in the top level directory cp(license_file, normpath(output_dir, "LICENSE"); force = true) + open(normpath(output_dir, "README.md"), "w") do io println(io, readme) - # since the exact Ribasim version may be hard to find in the Manifest.toml file - # we can also extract that information, and add it to the README.md - manifest = TOML.parsefile(normpath(git_repo, "Manifest.toml")) - if !haskey(manifest, "manifest_format") - error("Manifest.toml is in the old format, run Pkg.upgrade_manifest()") - end - julia_version = manifest["julia_version"] - ribasim_entry = only(manifest["deps"]["Ribasim"]) - version = ribasim_entry["version"] - repo = GitRepo(git_repo) - branch = LibGit2.head(repo) - commit = LibGit2.peel(LibGit2.GitCommit, branch) - short_name = LibGit2.shortname(branch) - short_commit = string(LibGit2.GitShortHash(LibGit2.GitHash(commit), 10)) - - # get the release from the current tag, like `git describe --tags` - # if it is a commit after a tag, it will be -g - options = - LibGit2.DescribeOptions(; describe_strategy = LibGit2.Consts.DESCRIBE_TAGS) - result = LibGit2.GitDescribeResult(repo; options) - tag = LibGit2.format(result) - url = "https://github.com/Deltares/Ribasim/tree" version_info = """ @@ -142,6 +157,9 @@ function add_metadata(project_dir, license_file, output_dir, git_repo, readme) ```""" println(io, version_info) end + + # Override the Cargo.toml file with the git version + set_version("cli/Cargo.toml", tag; group = "package") end main() diff --git a/build/cli/Cargo.lock b/build/cli/Cargo.lock index 0fe889c8f..f5edf5896 100644 --- a/build/cli/Cargo.lock +++ b/build/cli/Cargo.lock @@ -144,7 +144,7 @@ dependencies = [ [[package]] name = "ribasim" -version = "2024.7.0" +version = "2024.8.0" dependencies = [ "clap", "libc", diff --git a/build/cli/Cargo.toml b/build/cli/Cargo.toml index 82b19f5ba..5cfcd87fa 100644 --- a/build/cli/Cargo.toml +++ b/build/cli/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "ribasim" -version = "2024.7.0" +version = "2024.8.0" edition = "2021" # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html diff --git a/build/cli/src/main.rs b/build/cli/src/main.rs index 3aa394c3f..1f71afa9a 100644 --- a/build/cli/src/main.rs +++ b/build/cli/src/main.rs @@ -44,7 +44,8 @@ fn main() -> ExitCode { let shared_lib_path = match OS { "windows" => exe_dir.join("bin/libribasim.dll"), "linux" => exe_dir.join("lib/libribasim.so"), - _ => unimplemented!(), + "macos" => exe_dir.join("lib/libribasim.dylib"), + _ => unimplemented!("Your OS is not supported yet."), }; unsafe { // Load the library diff --git a/core/Project.toml b/core/Project.toml index 4d7b647a2..6a5909b27 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -2,7 +2,7 @@ name = "Ribasim" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" authors = ["Deltares and contributors "] manifest = "../Manifest.toml" -version = "2024.7.0" +version = "2024.8.0" [deps] Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" @@ -46,17 +46,16 @@ Aqua = "0.8" Arrow = "2.3" BasicModelInterface = "0.1" CSV = "0.10" -CodecZstd = "0.7,0.8" -ComponentArrays = "0.13,0.14,0.15" +CodecZstd = "0.7, 0.8" +ComponentArrays = "0.13, 0.14, 0.15" Configurations = "0.17" DBInterface = "2.4" DataFrames = "1.4" -DataInterpolations = "4.4" +DataInterpolations = "5" DataStructures = "0.18" -Dates = "<0.0.1,1" +Dates = "<0.0.1, 1" Dictionaries = "0.3.25, 0.4" DiffEqCallbacks = "3.6" -Documenter = "0.27,1" EnumX = "1.0" FiniteDiff = "2.21" ForwardDiff = "0.10" @@ -67,29 +66,28 @@ IterTools = "1.4" JuMP = "1.15" Legolas = "0.5" LinearSolve = "2.24" -Logging = "<0.0.1,1" +Logging = "<0.0.1, 1" LoggingExtras = "1" MetaGraphsNext = "0.6, 0.7" OrdinaryDiffEq = "6.7" PreallocationTools = "0.4" ReTestItems = "1.20" SQLite = "1.5.1" -SciMLBase = "1.60, 2" -SparseArrays = "<0.0.1,1" +SciMLBase = "2.36" +SparseArrays = "<0.0.1, 1" StructArrays = "0.6.13" -TOML = "<0.0.1,1" +TOML = "<0.0.1, 1" Tables = "1" TerminalLoggers = "0.1.7" -Test = "<0.0.1,1" +Test = "<0.0.1, 1" TimerOutputs = "0.5" -TranscodingStreams = "0.9,0.10" +TranscodingStreams = "0.9, 0.10" julia = "1.10" [extras] Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595" CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" IOCapture = "b5f81e59-6552-4d32-b1f0-c071b021bf89" Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" ReTestItems = "817f1d60-ba6b-4fd5-9520-3cf149f6a823" @@ -111,4 +109,4 @@ PrecompileNonStiff = false PrecompileStiff = false [targets] -test = ["Aqua", "CSV", "DataFrames", "Documenter", "IOCapture", "Logging", "ReTestItems", "TerminalLoggers", "Test", "TOML"] +test = ["Aqua", "CSV", "DataFrames", "IOCapture", "Logging", "ReTestItems", "TerminalLoggers", "Test", "TOML"] diff --git a/core/src/Ribasim.jl b/core/src/Ribasim.jl index f8d027f63..a761c4b34 100644 --- a/core/src/Ribasim.jl +++ b/core/src/Ribasim.jl @@ -55,6 +55,7 @@ using SciMLBase: init, solve!, step!, + check_error!, SciMLBase, ReturnCode, successful_retcode, diff --git a/core/src/callback.jl b/core/src/callback.jl index 74ae2b345..908e21b03 100644 --- a/core/src/callback.jl +++ b/core/src/callback.jl @@ -125,9 +125,7 @@ function integrate_flows!(u, t, integrator)::Nothing else # Horizontal flows value[] += - 0.5 * - (get_flow(graph, edge..., 0) + get_flow(graph, edge..., 0; prev = true)) * - dt + 0.5 * (get_flow(graph, edge..., 0) + get_flow_prev(graph, edge..., 0)) * dt end end diff --git a/core/src/config.jl b/core/src/config.jl index 07c9aa78c..25af231be 100644 --- a/core/src/config.jl +++ b/core/src/config.jl @@ -26,7 +26,8 @@ using OrdinaryDiffEq: Tsit5 export Config, Solver, Results, Logging, Toml -export algorithm, snake_case, input_path, results_path, convert_saveat, convert_dt +export algorithm, + snake_case, input_path, results_path, convert_saveat, convert_dt, nodetypes const schemas = getfield.( diff --git a/core/src/graph.jl b/core/src/graph.jl index edcd8f3cd..8351dd92d 100644 --- a/core/src/graph.jl +++ b/core/src/graph.jl @@ -18,10 +18,11 @@ function create_graph(db::DB, config::Config, chunk_sizes::Vector{Int})::MetaGra node_ids = Dict{Int32, Set{NodeID}}() # Source edges per subnetwork edges_source = Dict{Int32, Set{EdgeMetadata}}() - # The number of flow edges + # The flow counter gives a unique consecutive id to the + # flow edges to index the flow vectors flow_counter = 0 # Dictionary from flow edge to index in flow vector - flow_dict = Dict{Tuple{NodeID, NodeID}, Int}() + flow_dict = Dict{Tuple{NodeID, NodeID}, Int32}() graph = MetaGraph( DiGraph(); label_type = NodeID, @@ -65,7 +66,15 @@ function create_graph(db::DB, config::Config, chunk_sizes::Vector{Int})::MetaGra if ismissing(subnetwork_id) subnetwork_id = 0 end - edge_metadata = EdgeMetadata(fid, edge_type, subnetwork_id, (id_src, id_dst)) + edge_metadata = EdgeMetadata( + fid, + edge_type == EdgeType.flow ? flow_counter + 1 : 0, + edge_type, + subnetwork_id, + (id_src, id_dst), + -1, + -1, + ) if haskey(graph, id_src, id_dst) errors = true @error "Duplicate edge" id_src id_dst @@ -169,24 +178,55 @@ end Set the given flow q over the edge between the given nodes. """ function set_flow!(graph::MetaGraph, id_src::NodeID, id_dst::NodeID, q::Number)::Nothing - (; flow_dict, flow) = graph[] - get_tmp(flow, q)[flow_dict[(id_src, id_dst)]] = q + (; flow_dict) = graph[] + flow_idx = flow_dict[(id_src, id_dst)] + set_flow!(graph, flow_idx, q) + return nothing +end + +function set_flow!(graph::MetaGraph, edge_metadata::EdgeMetadata, q::Number)::Nothing + set_flow!(graph, edge_metadata.flow_idx, q) + return nothing +end + +function set_flow!(graph, flow_idx::Int32, q::Number)::Nothing + (; flow) = graph[] + get_tmp(flow, q)[flow_idx] = q return nothing end """ Get the flow over the given edge (val is needed for get_tmp from ForwardDiff.jl). """ -function get_flow( - graph::MetaGraph, - id_src::NodeID, - id_dst::NodeID, - val; - prev::Bool = false, -)::Number - (; flow_dict, flow, flow_prev) = graph[] - flow_vector = prev ? flow_prev : flow - return get_tmp(flow_vector, val)[flow_dict[id_src, id_dst]] +function get_flow(graph::MetaGraph, id_src::NodeID, id_dst::NodeID, val)::Number + (; flow_dict) = graph[] + flow_idx = flow_dict[id_src, id_dst] + return get_flow(graph, flow_idx, val) +end + +function get_flow(graph, edge_metadata::EdgeMetadata, val)::Number + return get_flow(graph, edge_metadata.flow_idx, val) +end + +function get_flow(graph::MetaGraph, flow_idx::Integer, val) + return get_tmp(graph[].flow, val)[flow_idx] +end + +function get_flow_prev(graph, id_src::NodeID, id_dst::NodeID, val)::Number + # Note: Can be removed after https://github.com/Deltares/Ribasim/pull/1444 + (; flow_dict) = graph[] + flow_idx = flow_dict[id_src, id_dst] + return get_flow(graph, flow_idx, val) +end + +function get_flow_prev(graph, edge_metadata::EdgeMetadata, val)::Number + # Note: Can be removed after https://github.com/Deltares/Ribasim/pull/1444 + return get_flow_prev(graph, edge_metadata.flow_idx, val) +end + +function get_flow_prev(graph::MetaGraph, flow_idx::Integer, val) + # Note: Can be removed after https://github.com/Deltares/Ribasim/pull/1444 + return get_tmp(graph[].flow_prev, val)[flow_idx] end """ diff --git a/core/src/main.jl b/core/src/main.jl index 1818d1394..f8b1ee004 100644 --- a/core/src/main.jl +++ b/core/src/main.jl @@ -46,6 +46,30 @@ function main(toml_path::AbstractString)::Cint t = datetime_since(model.integrator.t, starttime) retcode = model.integrator.sol.retcode @error "The model exited at model time $t with return code $retcode.\nSee https://docs.sciml.ai/DiffEqDocs/stable/basics/solution/#retcodes" + + (; cache, p, u) = model.integrator + (; basin) = p + # Indicate convergence bottlenecks if possible with the current algorithm + if hasproperty(cache, :nlsolver) + storage_error = @. abs(cache.nlsolver.cache.atmp.storage / u.storage) + perm = sortperm(storage_error; rev = true) + println( + "The following basins were identified as convergence bottlenecks (in descending order of severity):", + ) + for i in perm + node_id = basin.node_id.values[i] + error = storage_error[i] + if error < config.solver.reltol + break + end + println("$node_id, error = $error") + end + else + algorithm = model.config.solver_algorithm + println( + "The current algorithm ($algorithm) does not support indicating convergence bottlenecks, for that try a different one.", + ) + end return 1 end end diff --git a/core/src/model.jl b/core/src/model.jl index 602503dd6..4ab790d21 100644 --- a/core/src/model.jl +++ b/core/src/model.jl @@ -50,6 +50,11 @@ function Model(config::Config)::Model # All data from the database that we need during runtime is copied into memory, # so we can directly close it again. db = SQLite.DB(db_path) + + if !valid_edge_types(db) + error("Invalid edge types found.") + end + local parameters, state, n, tstops try parameters = Parameters(db, config) @@ -229,12 +234,7 @@ function SciMLBase.solve!(model::Model)::Model update_allocation!(integrator) step!(integrator, timestep, true) end - - if integrator.sol.retcode != ReturnCode.Default - return model - end - # TODO replace with `check_error!` https://github.com/SciML/SciMLBase.jl/issues/669 - integrator.sol = SciMLBase.solution_new_retcode(integrator.sol, ReturnCode.Success) + check_error!(integrator) else solve!(integrator) end diff --git a/core/src/parameter.jl b/core/src/parameter.jl index e3742808e..a4ee97098 100644 --- a/core/src/parameter.jl +++ b/core/src/parameter.jl @@ -35,10 +35,9 @@ end Base.to_index(id::NodeID) = Int(id.value) -const ScalarInterpolation = - LinearInterpolation{Vector{Float64}, Vector{Float64}, true, Float64} +const ScalarInterpolation = LinearInterpolation{Vector{Float64}, Vector{Float64}, Float64} const VectorInterpolation = - LinearInterpolation{Vector{Vector{Float64}}, Vector{Float64}, true, Vector{Float64}} + LinearInterpolation{Vector{Vector{Float64}}, Vector{Float64}, Vector{Float64}} """ Store information for a subnetwork used for allocation. @@ -116,16 +115,22 @@ end """ Type for storing metadata of edges in the graph: id: ID of the edge (only used for labeling flow output) +flow_idx: Index in the vector of flows type: type of the edge subnetwork_id_source: ID of subnetwork where this edge is a source (0 if not a source) edge: (from node ID, to node ID) +basin_idx_src: Basin index of source node (0 if not a basin) +basin_idx_dst: Basin index of destination node (0 if not a basin) """ struct EdgeMetadata id::Int32 + flow_idx::Int32 type::EdgeType.T subnetwork_id_source::Int32 edge::Tuple{NodeID, NodeID} + basin_idx_src::Int32 + basin_idx_dst::Int32 end abstract type AbstractParameterNode end @@ -233,6 +238,10 @@ Type parameter C indicates the content backing the StructVector, which can be a of Vectors or Arrow Primitives, and is added to avoid type instabilities. node_id: node ID of the TabulatedRatingCurve node +inflow_edge: incoming flow edge metadata + The ID of the destination node is always the ID of the TabulatedRatingCurve node +outflow_edges: outgoing flow edges metadata + The ID of the source node is always the ID of the TabulatedRatingCurve node active: whether this node is active and thus contributes flows tables: The current Q(h) relationships time: The time table used for updating the tables @@ -240,6 +249,8 @@ control_mapping: dictionary from (node_id, control_state) to Q(h) and/or active """ struct TabulatedRatingCurve{C} <: AbstractParameterNode node_id::Vector{NodeID} + inflow_edge::Vector{EdgeMetadata} + outflow_edges::Vector{Vector{EdgeMetadata}} active::BitVector tables::Vector{ScalarInterpolation} time::StructVector{TabulatedRatingCurveTimeV1, C, Int} @@ -248,8 +259,10 @@ end """ node_id: node ID of the LinearResistance node -inflow_id: node ID across the incoming flow edge -outflow_id: node ID across the outgoing flow edge +inflow_edge: incoming flow edge metadata + The ID of the destination node is always the ID of the LinearResistance node +outflow_edge: outgoing flow edge metadata + The ID of the source node is always the ID of the LinearResistance node active: whether this node is active and thus contributes flows resistance: the resistance to flow; `Q_unlimited = Δh/resistance` max_flow_rate: the maximum flow rate allowed through the node; `Q = clamp(Q_unlimited, -max_flow_rate, max_flow_rate)` @@ -257,8 +270,8 @@ control_mapping: dictionary from (node_id, control_state) to resistance and/or a """ struct LinearResistance <: AbstractParameterNode node_id::Vector{NodeID} - inflow_id::Vector{NodeID} - outflow_id::Vector{NodeID} + inflow_edge::Vector{EdgeMetadata} + outflow_edge::Vector{EdgeMetadata} active::BitVector resistance::Vector{Float64} max_flow_rate::Vector{Float64} @@ -269,8 +282,10 @@ end This is a simple Manning-Gauckler reach connection. node_id: node ID of the ManningResistance node -inflow_id: node ID across the incoming flow edge -outflow_id: node ID across the outgoing flow edge +inflow_edge: incoming flow edge metadata + The ID of the destination node is always the ID of the ManningResistance node +outflow_edge: outgoing flow edge metadata + The ID of the source node is always the ID of the ManningResistance node length: reach length manning_n: roughness; Manning's n in (SI units). @@ -303,29 +318,31 @@ Requirements: """ struct ManningResistance <: AbstractParameterNode node_id::Vector{NodeID} - inflow_id::Vector{NodeID} - outflow_id::Vector{NodeID} + inflow_edge::Vector{EdgeMetadata} + outflow_edge::Vector{EdgeMetadata} active::BitVector length::Vector{Float64} manning_n::Vector{Float64} profile_width::Vector{Float64} profile_slope::Vector{Float64} + upstream_bottom::Vector{Float64} + downstream_bottom::Vector{Float64} control_mapping::Dict{Tuple{NodeID, String}, NamedTuple} end """ -Requirements: - -* from: must be (TabulatedRatingCurve,) node -* to: must be (Basin,) node -* fraction must be positive. - -node_id: node ID of the TabulatedRatingCurve node +node_id: node ID of the FractionalFlow node +inflow_edge: incoming flow edge metadata + The ID of the destination node is always the ID of the FractionalFlow node +outflow_edge: outgoing flow edge metadata + The ID of the source node is always the ID of the FractionalFlow node fraction: The fraction in [0,1] of flow the node lets through control_mapping: dictionary from (node_id, control_state) to fraction """ struct FractionalFlow <: AbstractParameterNode node_id::Vector{NodeID} + inflow_edge::Vector{EdgeMetadata} + outflow_edge::Vector{EdgeMetadata} fraction::Vector{Float64} control_mapping::Dict{Tuple{NodeID, String}, NamedTuple} end @@ -354,6 +371,10 @@ end """ node_id: node ID of the Pump node +inflow_edge: incoming flow edge metadata + The ID of the destination node is always the ID of the Pump node +outflow_edges: outgoing flow edges metadata + The ID of the source node is always the ID of the Pump node active: whether this node is active and thus contributes flow flow_rate: target flow rate min_flow_rate: The minimal flow rate of the pump @@ -363,6 +384,8 @@ is_pid_controlled: whether the flow rate of this pump is governed by PID control """ struct Pump{T} <: AbstractParameterNode node_id::Vector{NodeID} + inflow_edge::Vector{EdgeMetadata} + outflow_edges::Vector{Vector{EdgeMetadata}} active::BitVector flow_rate::T min_flow_rate::Vector{Float64} @@ -372,6 +395,8 @@ struct Pump{T} <: AbstractParameterNode function Pump( node_id, + inflow_edge, + outflow_edges, active, flow_rate::T, min_flow_rate, @@ -382,6 +407,8 @@ struct Pump{T} <: AbstractParameterNode if valid_flow_rates(node_id, get_tmp(flow_rate, 0), control_mapping) return new{T}( node_id, + inflow_edge, + outflow_edges, active, flow_rate, min_flow_rate, @@ -397,6 +424,10 @@ end """ node_id: node ID of the Outlet node +inflow_edge: incoming flow edge metadata. + The ID of the destination node is always the ID of the Outlet node +outflow_edges: outgoing flow edges metadata. + The ID of the source node is always the ID of the Outlet node active: whether this node is active and thus contributes flow flow_rate: target flow rate min_flow_rate: The minimal flow rate of the outlet @@ -406,6 +437,8 @@ is_pid_controlled: whether the flow rate of this outlet is governed by PID contr """ struct Outlet{T} <: AbstractParameterNode node_id::Vector{NodeID} + inflow_edge::Vector{EdgeMetadata} + outflow_edges::Vector{Vector{EdgeMetadata}} active::BitVector flow_rate::T min_flow_rate::Vector{Float64} @@ -416,6 +449,8 @@ struct Outlet{T} <: AbstractParameterNode function Outlet( node_id, + inflow_id, + outflow_ids, active, flow_rate::T, min_flow_rate, @@ -427,6 +462,8 @@ struct Outlet{T} <: AbstractParameterNode if valid_flow_rates(node_id, get_tmp(flow_rate, 0), control_mapping) return new{T}( node_id, + inflow_id, + outflow_ids, active, flow_rate, min_flow_rate, @@ -503,6 +540,11 @@ struct PidControl{T} <: AbstractParameterNode end """ +node_id: node ID of the UserDemand node +inflow_edge: incoming flow edge + The ID of the destination node is always the ID of the UserDemand node +outflow_edge: outgoing flow edge metadata + The ID of the source node is always the ID of the UserDemand node active: whether this node is active and thus demands water realized_bmi: Cumulative inflow volume, for read or reset by BMI only demand: water flux demand of UserDemand per priority over time @@ -518,6 +560,8 @@ min_level: The level of the source basin below which the UserDemand does not abs """ struct UserDemand <: AbstractParameterNode node_id::Vector{NodeID} + inflow_edge::Vector{EdgeMetadata} + outflow_edge::Vector{EdgeMetadata} active::BitVector realized_bmi::Vector{Float64} demand::Matrix{Float64} @@ -530,6 +574,8 @@ struct UserDemand <: AbstractParameterNode function UserDemand( node_id, + inflow_id, + outflow_id, active, realized_bmi, demand, @@ -544,6 +590,8 @@ struct UserDemand <: AbstractParameterNode if valid_demand(node_id, demand_itp, priorities) return new( node_id, + inflow_id, + outflow_id, active, realized_bmi, demand, @@ -568,8 +616,8 @@ priority: If in a shortage state, the priority of the demand of the connected ba """ struct LevelDemand <: AbstractParameterNode node_id::Vector{NodeID} - min_level::Vector{LinearInterpolation} - max_level::Vector{LinearInterpolation} + min_level::Vector{ScalarInterpolation} + max_level::Vector{ScalarInterpolation} priority::Vector{Int32} end @@ -582,6 +630,7 @@ end "Subgrid linearly interpolates basin levels." struct Subgrid + subgrid_id::Vector{Int32} basin_index::Vector{Int32} interpolations::Vector{ScalarInterpolation} level::Vector{Float64} @@ -599,7 +648,7 @@ struct Parameters{T, C1, C2, V1, V2, V3} @NamedTuple{ node_ids::Dict{Int32, Set{NodeID}}, edges_source::Dict{Int32, Set{EdgeMetadata}}, - flow_dict::Dict{Tuple{NodeID, NodeID}, Int}, + flow_dict::Dict{Tuple{NodeID, NodeID}, Int32}, flow::T, flow_prev::Vector{Float64}, flow_integrated::Vector{Float64}, diff --git a/core/src/read.jl b/core/src/read.jl index 00a17b895..bad30b7df 100644 --- a/core/src/read.jl +++ b/core/src/read.jl @@ -246,8 +246,8 @@ function LinearResistance(db::DB, config::Config, graph::MetaGraph)::LinearResis return LinearResistance( node_id, - inflow_id.(Ref(graph), node_id), - outflow_id.(Ref(graph), node_id), + inflow_edge.(Ref(graph), node_id), + outflow_edge.(Ref(graph), node_id), BitVector(parsed_parameters.active), parsed_parameters.resistance, parsed_parameters.max_flow_rate, @@ -255,7 +255,11 @@ function LinearResistance(db::DB, config::Config, graph::MetaGraph)::LinearResis ) end -function TabulatedRatingCurve(db::DB, config::Config)::TabulatedRatingCurve +function TabulatedRatingCurve( + db::DB, + config::Config, + graph::MetaGraph, +)::TabulatedRatingCurve static = load_structvector(db, config, TabulatedRatingCurveStaticV1) time = load_structvector(db, config, TabulatedRatingCurveTimeV1) @@ -290,7 +294,11 @@ function TabulatedRatingCurve(db::DB, config::Config)::TabulatedRatingCurve IterTools.groupby(row -> coalesce(row.control_state, nothing), static_id) control_state = first(group).control_state is_active = coalesce(first(group).active, true) - interpolation, is_valid = qh_interpolation(node_id, StructVector(group)) + table = StructVector(group) + if !valid_tabulated_rating_curve(node_id, table) + errors = true + end + interpolation = qh_interpolation(node_id, table) if !ismissing(control_state) control_mapping[( NodeID(NodeType.TabulatedRatingCurve, node_id), @@ -305,27 +313,39 @@ function TabulatedRatingCurve(db::DB, config::Config)::TabulatedRatingCurve # get the timestamp that applies to the model starttime idx_starttime = searchsortedlast(time.time, config.starttime) pre_table = view(time, 1:idx_starttime) - interpolation, is_valid = qh_interpolation(node_id, pre_table) + if !valid_tabulated_rating_curve(node_id, pre_table) + errors = true + end + interpolation = qh_interpolation(node_id, pre_table) push!(interpolations, interpolation) push!(active, true) else @error "$node_id data not in any table." errors = true end - if !is_valid - @error "A Q(h) relationship for $node_id from the $source table has repeated levels, this can not be interpolated." - errors = true - end end if errors error("Errors occurred when parsing TabulatedRatingCurve data.") end - return TabulatedRatingCurve(node_ids, active, interpolations, time, control_mapping) + return TabulatedRatingCurve( + node_ids, + inflow_edge.(Ref(graph), node_ids), + outflow_edges.(Ref(graph), node_ids), + active, + interpolations, + time, + control_mapping, + ) end -function ManningResistance(db::DB, config::Config, graph::MetaGraph)::ManningResistance +function ManningResistance( + db::DB, + config::Config, + graph::MetaGraph, + basin::Basin, +)::ManningResistance static = load_structvector(db, config, ManningResistanceStaticV1) parsed_parameters, valid = parse_static_and_time(db, config, "ManningResistance"; static) @@ -335,21 +355,25 @@ function ManningResistance(db::DB, config::Config, graph::MetaGraph)::ManningRes end node_id = NodeID.(NodeType.ManningResistance, parsed_parameters.node_id) + upstream_bottom = basin_bottom.(Ref(basin), inflow_id.(Ref(graph), node_id)) + downstream_bottom = basin_bottom.(Ref(basin), outflow_id.(Ref(graph), node_id)) return ManningResistance( node_id, - inflow_id.(Ref(graph), node_id), - outflow_id.(Ref(graph), node_id), + inflow_edge.(Ref(graph), node_id), + outflow_edge.(Ref(graph), node_id), BitVector(parsed_parameters.active), parsed_parameters.length, parsed_parameters.manning_n, parsed_parameters.profile_width, parsed_parameters.profile_slope, + [bottom[2] for bottom in upstream_bottom], + [bottom[2] for bottom in downstream_bottom], parsed_parameters.control_mapping, ) end -function FractionalFlow(db::DB, config::Config)::FractionalFlow +function FractionalFlow(db::DB, config::Config, graph::MetaGraph)::FractionalFlow static = load_structvector(db, config, FractionalFlowStaticV1) parsed_parameters, valid = parse_static_and_time(db, config, "FractionalFlow"; static) @@ -357,8 +381,12 @@ function FractionalFlow(db::DB, config::Config)::FractionalFlow error("Errors occurred when parsing FractionalFlow data.") end + node_id = NodeID.(NodeType.FractionalFlow, parsed_parameters.node_id) + return FractionalFlow( - NodeID.(NodeType.FractionalFlow, parsed_parameters.node_id), + node_id, + inflow_edge.(Ref(graph), node_id), + outflow_edge.(Ref(graph), node_id), parsed_parameters.fraction, parsed_parameters.control_mapping, ) @@ -427,7 +455,7 @@ function FlowBoundary(db::DB, config::Config)::FlowBoundary return FlowBoundary(node_ids, parsed_parameters.active, parsed_parameters.flow_rate) end -function Pump(db::DB, config::Config, chunk_sizes::Vector{Int})::Pump +function Pump(db::DB, config::Config, graph::MetaGraph, chunk_sizes::Vector{Int})::Pump static = load_structvector(db, config, PumpStaticV1) defaults = (; min_flow_rate = 0.0, max_flow_rate = Inf, active = true) parsed_parameters, valid = parse_static_and_time(db, config, "Pump"; static, defaults) @@ -444,8 +472,12 @@ function Pump(db::DB, config::Config, chunk_sizes::Vector{Int})::Pump parsed_parameters.flow_rate end + node_id = NodeID.(NodeType.Pump, parsed_parameters.node_id) + return Pump( - NodeID.(NodeType.Pump, parsed_parameters.node_id), + node_id, + inflow_edge.(Ref(graph), node_id), + outflow_edges.(Ref(graph), node_id), BitVector(parsed_parameters.active), flow_rate, parsed_parameters.min_flow_rate, @@ -455,7 +487,7 @@ function Pump(db::DB, config::Config, chunk_sizes::Vector{Int})::Pump ) end -function Outlet(db::DB, config::Config, chunk_sizes::Vector{Int})::Outlet +function Outlet(db::DB, config::Config, graph::MetaGraph, chunk_sizes::Vector{Int})::Outlet static = load_structvector(db, config, OutletStaticV1) defaults = (; min_flow_rate = 0.0, max_flow_rate = Inf, min_crest_level = -Inf, active = true) @@ -473,8 +505,12 @@ function Outlet(db::DB, config::Config, chunk_sizes::Vector{Int})::Outlet parsed_parameters.flow_rate end + node_id = NodeID.(NodeType.Outlet, parsed_parameters.node_id) + return Outlet( - NodeID.(NodeType.Outlet, parsed_parameters.node_id), + node_id, + inflow_edge.(Ref(graph), node_id), + outflow_edges.(Ref(graph), node_id), BitVector(parsed_parameters.active), flow_rate, parsed_parameters.min_flow_rate, @@ -806,7 +842,7 @@ function user_demand_time!( return errors end -function UserDemand(db::DB, config::Config)::UserDemand +function UserDemand(db::DB, config::Config, graph::MetaGraph)::UserDemand static = load_structvector(db, config, UserDemandStaticV1) time = load_structvector(db, config, UserDemandTimeV1) @@ -865,6 +901,8 @@ function UserDemand(db::DB, config::Config)::UserDemand return UserDemand( node_ids, + inflow_edge.(Ref(graph), node_ids), + outflow_edge.(Ref(graph), node_ids), active, realized_bmi, demand, @@ -935,7 +973,8 @@ function Subgrid(db::DB, config::Config, basin::Basin)::Subgrid node_to_basin = Dict(node_id => index for (index, node_id) in enumerate(basin.node_id)) tables = load_structvector(db, config, BasinSubgridV1) - basin_ids = Int32[] + subgrid_ids = Int32[] + basin_index = Int32[] interpolations = ScalarInterpolation[] has_error = false for group in IterTools.groupby(row -> row.subgrid_id, tables) @@ -952,7 +991,8 @@ function Subgrid(db::DB, config::Config, basin::Basin)::Subgrid pushfirst!(subgrid_level, first(subgrid_level)) pushfirst!(basin_level, nextfloat(-Inf)) new_interp = LinearInterpolation(subgrid_level, basin_level; extrapolate = true) - push!(basin_ids, node_to_basin[node_id]) + push!(subgrid_ids, subgrid_id) + push!(basin_index, node_to_basin[node_id]) push!(interpolations, new_interp) else has_error = true @@ -960,8 +1000,9 @@ function Subgrid(db::DB, config::Config, basin::Basin)::Subgrid end has_error && error("Invalid Basin / subgrid table.") + level = fill(NaN, length(subgrid_ids)) - return Subgrid(basin_ids, interpolations, fill(NaN, length(basin_ids))) + return Subgrid(subgrid_ids, basin_index, interpolations, level) end function Allocation(db::DB, config::Config, graph::MetaGraph)::Allocation @@ -1041,23 +1082,28 @@ function Parameters(db::DB, config::Config)::Parameters if !valid_edges(graph) error("Invalid edge(s) found.") end + if !valid_n_neighbors(graph) + error("Invalid number of connections for certain node types.") + end + + basin = Basin(db, config, graph, chunk_sizes) + set_basin_idxs!(graph, basin) linear_resistance = LinearResistance(db, config, graph) - manning_resistance = ManningResistance(db, config, graph) - tabulated_rating_curve = TabulatedRatingCurve(db, config) - fractional_flow = FractionalFlow(db, config) + manning_resistance = ManningResistance(db, config, graph, basin) + tabulated_rating_curve = TabulatedRatingCurve(db, config, graph) + fractional_flow = FractionalFlow(db, config, graph) level_boundary = LevelBoundary(db, config) flow_boundary = FlowBoundary(db, config) - pump = Pump(db, config, chunk_sizes) - outlet = Outlet(db, config, chunk_sizes) + pump = Pump(db, config, graph, chunk_sizes) + outlet = Outlet(db, config, graph, chunk_sizes) terminal = Terminal(db, config) discrete_control = DiscreteControl(db, config) pid_control = PidControl(db, config, chunk_sizes) - user_demand = UserDemand(db, config) + user_demand = UserDemand(db, config, graph) level_demand = LevelDemand(db, config) flow_demand = FlowDemand(db, config) - basin = Basin(db, config, graph, chunk_sizes) subgrid_level = Subgrid(db, config, basin) p = Parameters( @@ -1084,10 +1130,6 @@ function Parameters(db::DB, config::Config)::Parameters set_is_pid_controlled!(p) - if !valid_n_neighbors(p) - error("Invalid number of connections for certain node types.") - end - # Allocation data structures if config.allocation.use_allocation initialize_allocation!(p, config) diff --git a/core/src/schema.jl b/core/src/schema.jl index 9ca14f9c6..1b6c8b42d 100644 --- a/core/src/schema.jl +++ b/core/src/schema.jl @@ -8,12 +8,17 @@ @schema "ribasim.basin.profile" BasinProfile @schema "ribasim.basin.state" BasinState @schema "ribasim.basin.subgrid" BasinSubgrid +@schema "ribasim.basin.concentration" BasinConcentration +@schema "ribasim.basin.concentrationexternal" BasinConcentrationExternal +@schema "ribasim.basin.concentrationstate" BasinConcentrationState @schema "ribasim.terminal.static" TerminalStatic @schema "ribasim.fractionalflow.static" FractionalFlowStatic @schema "ribasim.flowboundary.static" FlowBoundaryStatic @schema "ribasim.flowboundary.time" FlowBoundaryTime +@schema "ribasim.flowboundary.concentration" FlowBoundaryConcentration @schema "ribasim.levelboundary.static" LevelBoundaryStatic @schema "ribasim.levelboundary.time" LevelBoundaryTime +@schema "ribasim.levelboundary.concentration" LevelBoundaryConcentration @schema "ribasim.linearresistance.static" LinearResistanceStatic @schema "ribasim.manningresistance.static" ManningResistanceStatic @schema "ribasim.pidcontrol.static" PidControlStatic @@ -99,6 +104,21 @@ end urban_runoff::Union{Missing, Float64} end +@version BasinConcentrationV1 begin + node_id::Int32 + time::DateTime + substance::String + drainage::Union{Missing, Float64} + precipitation::Union{Missing, Float64} +end + +@version BasinConcentrationExternalV1 begin + node_id::Int32 + time::DateTime + substance::String + concentration::Union{Missing, Float64} +end + @version BasinProfileV1 begin node_id::Int32 area::Float64 @@ -110,6 +130,12 @@ end level::Float64 end +@version BasinConcentrationStateV1 begin + node_id::Int32 + substance::String + concentration::Union{Missing, Float64} +end + @version BasinSubgridV1 begin subgrid_id::Int32 node_id::Int32 @@ -135,6 +161,13 @@ end level::Float64 end +@version LevelBoundaryConcentrationV1 begin + node_id::Int32 + time::DateTime + substance::String + concentration::Float64 +end + @version FlowBoundaryStaticV1 begin node_id::Int32 active::Union{Missing, Bool} @@ -147,6 +180,13 @@ end flow_rate::Float64 end +@version FlowBoundaryConcentrationV1 begin + node_id::Int32 + time::DateTime + substance::String + concentration::Float64 +end + @version LinearResistanceStaticV1 begin node_id::Int32 active::Union{Missing, Bool} diff --git a/core/src/solve.jl b/core/src/solve.jl index 96ec3b6f5..a0334bee0 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -25,7 +25,7 @@ function water_balance!( formulate_flows!(p, storage, t) # Now formulate du - formulate_du!(du, graph, basin, storage) + formulate_du!(du, graph, storage) # PID control (changes the du of PID controlled basins) continuous_control!(u, du, pid_control, p, integral, t) @@ -42,8 +42,8 @@ function set_current_basin_properties!(basin::Basin, storage::AbstractVector)::N s = storage[i] area, level = get_area_and_level(basin, i, s) - current_level[i] = level current_area[i] = area + current_level[i] = level end end @@ -151,19 +151,22 @@ function continuous_control!( src_id = inflow_id(graph, controlled_node_id) dst_id = outflow_id(graph, controlled_node_id) - src_level = get_level(p, src_id, t; storage) - dst_level = get_level(p, dst_id, t; storage) + inflow_edge = graph[src_id, controlled_node_id] + outflow_edge = graph[controlled_node_id, dst_id] + + has_src_level, src_level = get_level(p, inflow_edge, src_id, t; storage) + has_dst_level, dst_level = get_level(p, outflow_edge, dst_id, t; storage) factor_outlet = 1.0 # No flow out of outlet if source level is lower than reference level - if !(src_level === nothing || dst_level === nothing) + if has_src_level && has_dst_level Δlevel = src_level - dst_level factor_outlet *= reduction_factor(Δlevel, 0.1) end # No flow out of outlet if source level is lower than minimum crest level - if src_level !== nothing + if has_src_level controlled_node_idx = findsorted(outlet.node_id, controlled_node_id) factor_outlet *= reduction_factor( @@ -176,7 +179,8 @@ function continuous_control!( end id_inflow = inflow_id(graph, controlled_node_id) - factor_basin = low_storage_factor(storage, basin.node_id, id_inflow, 10.0) + inflow_edge = graph[id_inflow, controlled_node_id] + factor_basin = low_storage_factor(storage, inflow_edge, id_inflow, 10.0) factor = factor_basin * factor_outlet flow_rate = 0.0 @@ -270,23 +274,33 @@ function formulate_flow!( storage::AbstractVector, t::Number, )::Nothing - (; graph, basin, allocation) = p - (; + (; graph, allocation) = p + + for ( node_id, - allocated, + inflow_edge, + outflow_edge, active, demand_itp, demand, + allocated, return_factor, min_level, demand_from_timeseries, - ) = user_demand - - for (i, id) in enumerate(node_id) - src_id = inflow_id(graph, id) - dst_id = outflow_id(graph, id) - - if !active[i] + ) in zip( + user_demand.node_id, + user_demand.inflow_edge, + user_demand.outflow_edge, + user_demand.active, + user_demand.demand_itp, + # TODO permute these so the nodes are the last dimension, for performance + eachrow(user_demand.demand), + eachrow(user_demand.allocated), + user_demand.return_factor, + user_demand.min_level, + user_demand.demand_from_timeseries, + ) + if !active continue end @@ -297,31 +311,32 @@ function formulate_flow!( # If allocation is not optimized then allocated = Inf, so the result is always # effectively allocated = demand. for priority_idx in eachindex(allocation.priorities) - alloc_prio = allocated[i, priority_idx] - demand_prio = if demand_from_timeseries[i] - demand_itp[i][priority_idx](t) + alloc_prio = allocated[priority_idx] + demand_prio = if demand_from_timeseries + demand_itp[priority_idx](t) else - demand[i, priority_idx] + demand[priority_idx] end alloc = min(alloc_prio, demand_prio) q += alloc end # Smoothly let abstraction go to 0 as the source basin dries out - factor_basin = low_storage_factor(storage, basin.node_id, src_id, 10.0) + inflow_id = inflow_edge.edge[1] + factor_basin = low_storage_factor(storage, inflow_edge, inflow_id, 10.0) q *= factor_basin # Smoothly let abstraction go to 0 as the source basin # level reaches its minimum level - source_level = get_level(p, src_id, t; storage) - Δsource_level = source_level - min_level[i] + _, source_level = get_level(p, inflow_edge, inflow_id, t; storage) + Δsource_level = source_level - min_level factor_level = reduction_factor(Δsource_level, 0.1) q *= factor_level - set_flow!(graph, src_id, id, q) + set_flow!(graph, inflow_edge, q) # Return flow is immediate - set_flow!(graph, id, dst_id, q * return_factor[i]) + set_flow!(graph, outflow_edge, q * return_factor) end return nothing end @@ -338,24 +353,27 @@ function formulate_flow!( (; graph) = p (; node_id, active, resistance, max_flow_rate) = linear_resistance for (i, id) in enumerate(node_id) - inflow_id = linear_resistance.inflow_id[i] - outflow_id = linear_resistance.outflow_id[i] + inflow_edge = linear_resistance.inflow_edge[i] + outflow_edge = linear_resistance.outflow_edge[i] + + inflow_id = inflow_edge.edge[1] + outflow_id = outflow_edge.edge[2] if active[i] - h_a = get_level(p, inflow_id, t; storage) - h_b = get_level(p, outflow_id, t; storage) + _, h_a = get_level(p, inflow_edge, inflow_id, t; storage) + _, h_b = get_level(p, outflow_edge, outflow_id, t; storage) q_unlimited = (h_a - h_b) / resistance[i] q = clamp(q_unlimited, -max_flow_rate[i], max_flow_rate[i]) # add reduction_factor on highest level if q > 0 - q *= low_storage_factor(storage, p.basin.node_id, inflow_id, 10.0) + q *= low_storage_factor(storage, inflow_edge, inflow_id, 10.0) else - q *= low_storage_factor(storage, p.basin.node_id, outflow_id, 10.0) + q *= low_storage_factor(storage, outflow_edge, outflow_id, 10.0) end - set_flow!(graph, inflow_id, id, q) - set_flow!(graph, id, outflow_id, q) + set_flow!(graph, inflow_edge, q) + set_flow!(graph, outflow_edge, q) end end return nothing @@ -370,22 +388,26 @@ function formulate_flow!( storage::AbstractVector, t::Number, )::Nothing - (; basin, graph) = p - (; node_id, active, tables) = tabulated_rating_curve + (; graph) = p + (; node_id, active, tables, inflow_edge, outflow_edges) = tabulated_rating_curve + for (i, id) in enumerate(node_id) - upstream_basin_id = inflow_id(graph, id) - downstream_ids = outflow_ids(graph, id) + upstream_edge = inflow_edge[i] + downstream_edges = outflow_edges[i] + upstream_basin_id = upstream_edge.edge[1] if active[i] - factor = low_storage_factor(storage, basin.node_id, upstream_basin_id, 10.0) - q = factor * tables[i](get_level(p, upstream_basin_id, t; storage)) + factor = low_storage_factor(storage, upstream_edge, upstream_basin_id, 10.0) + q = + factor * + tables[i](get_level(p, upstream_edge, upstream_basin_id, t; storage)[2]) else q = 0.0 end - set_flow!(graph, upstream_basin_id, id, q) - for downstream_id in downstream_ids - set_flow!(graph, id, downstream_id, q) + set_flow!(graph, upstream_edge, q) + for downstream_edge in downstream_edges + set_flow!(graph, downstream_edge, q) end end return nothing @@ -433,24 +455,35 @@ dry. function formulate_flow!( manning_resistance::ManningResistance, p::Parameters, - storage::AbstractVector, + storage::AbstractVector{T}, t::Number, -)::Nothing - (; basin, graph) = p - (; node_id, active, length, manning_n, profile_width, profile_slope) = - manning_resistance +)::Nothing where {T} + (; graph) = p + (; + node_id, + active, + length, + manning_n, + profile_width, + profile_slope, + upstream_bottom, + downstream_bottom, + ) = manning_resistance for (i, id) in enumerate(node_id) - inflow_id = manning_resistance.inflow_id[i] - outflow_id = manning_resistance.outflow_id[i] + inflow_edge = manning_resistance.inflow_edge[i] + outflow_edge = manning_resistance.outflow_edge[i] + + inflow_id = inflow_edge.edge[1] + outflow_id = outflow_edge.edge[2] if !active[i] continue end - h_a = get_level(p, inflow_id, t; storage) - h_b = get_level(p, outflow_id, t; storage) - bottom_a = basin_bottom(basin, inflow_id) - bottom_b = basin_bottom(basin, outflow_id) + _, h_a = get_level(p, inflow_edge, inflow_id, t; storage) + _, h_b = get_level(p, outflow_edge, outflow_id, t; storage) + bottom_a = upstream_bottom[i] + bottom_b = downstream_bottom[i] slope = profile_slope[i] width = profile_width[i] n = manning_n[i] @@ -473,15 +506,15 @@ function formulate_flow!( P_b = width + 2.0 * d_b * slope_unit_length R_h_a = A_a / P_a R_h_b = A_b / P_b - R_h = 0.5 * (R_h_a + R_h_b) + R_h::T = 0.5 * (R_h_a + R_h_b) k = 1000.0 # This epsilon makes sure the AD derivative at Δh = 0 does not give NaN eps = 1e-200 - q = q_sign * A / n * R_h^(2 / 3) * sqrt(Δh / L * 2 / π * atan(k * Δh) + eps) + q = q_sign * A / n * ∛(R_h^2) * sqrt(Δh / L * 2 / π * atan(k * Δh) + eps) - set_flow!(graph, inflow_id, id, q) - set_flow!(graph, id, outflow_id, q) + set_flow!(graph, inflow_edge, q) + set_flow!(graph, outflow_edge, q) end return nothing end @@ -493,15 +526,17 @@ function formulate_flow!( t::Number, )::Nothing (; graph) = p - (; node_id, fraction) = fractional_flow - for (i, id) in enumerate(node_id) - downstream_id = outflow_id(graph, id) - upstream_id = inflow_id(graph, id) + for (node_id, inflow_edge, outflow_edge, fraction) in zip( + fractional_flow.node_id, + fractional_flow.inflow_edge, + fractional_flow.outflow_edge, + fractional_flow.fraction, + ) # overwrite the inflow such that flow is conserved over the FractionalFlow - outflow = get_flow(graph, upstream_id, id, storage) * fraction[i] - set_flow!(graph, upstream_id, id, outflow) - set_flow!(graph, id, downstream_id, outflow) + outflow = get_flow(graph, inflow_edge, storage) * fraction + set_flow!(graph, inflow_edge, outflow) + set_flow!(graph, outflow_edge, outflow) end return nothing end @@ -537,22 +572,28 @@ function formulate_flow!( t::Number, )::Nothing (; graph, basin) = p - (; node_id, active, flow_rate, is_pid_controlled) = pump - flow_rate = get_tmp(flow_rate, storage) - for (id, isactive, rate, pid_controlled) in - zip(node_id, active, flow_rate, is_pid_controlled) - src_id = inflow_id(graph, id) - dst_id = outflow_id(graph, id) - - if !isactive || pid_controlled + + for (node_id, inflow_edge, outflow_edges, active, flow_rate, is_pid_controlled) in zip( + pump.node_id, + pump.inflow_edge, + pump.outflow_edges, + pump.active, + get_tmp(pump.flow_rate, storage), + pump.is_pid_controlled, + ) + if !active || is_pid_controlled continue end - factor = low_storage_factor(storage, basin.node_id, src_id, 10.0) - q = rate * factor + inflow_id = inflow_edge.edge[1] + factor = low_storage_factor(storage, inflow_edge, inflow_id, 10.0) + q = flow_rate * factor + + set_flow!(graph, inflow_edge, q) - set_flow!(graph, src_id, id, q) - set_flow!(graph, id, dst_id, q) + for outflow_edge in outflow_edges + set_flow!(graph, outflow_edge, q) + end end return nothing end @@ -563,23 +604,39 @@ function formulate_flow!( storage::AbstractVector, t::Number, )::Nothing - (; graph, basin) = p - (; node_id, active, flow_rate, is_pid_controlled, min_crest_level) = outlet - flow_rate = get_tmp(flow_rate, storage) - for (i, id) in enumerate(node_id) - src_id = inflow_id(graph, id) - dst_id = outflow_id(graph, id) + (; graph) = p - if !active[i] || is_pid_controlled[i] + for ( + node_id, + inflow_edge, + outflow_edges, + active, + flow_rate, + is_pid_controlled, + min_crest_level, + ) in zip( + outlet.node_id, + outlet.inflow_edge, + outlet.outflow_edges, + outlet.active, + get_tmp(outlet.flow_rate, storage), + outlet.is_pid_controlled, + outlet.min_crest_level, + ) + if !active || is_pid_controlled continue end - q = flow_rate[i] - q *= low_storage_factor(storage, basin.node_id, src_id, 10.0) + inflow_id = inflow_edge.edge[1] + q = flow_rate + q *= low_storage_factor(storage, inflow_edge, inflow_id, 10.0) # No flow of outlet if source level is lower than target level - src_level = get_level(p, src_id, t; storage) - dst_level = get_level(p, dst_id, t; storage) + # TODO support multiple outflows to FractionalFlow, or refactor FractionalFlow + outflow_edge = only(outflow_edges) + outflow_id = outflow_edge.edge[2] + _, src_level = get_level(p, inflow_edge, inflow_id, t; storage) + _, dst_level = get_level(p, outflow_edge, outflow_id, t; storage) if src_level !== nothing && dst_level !== nothing Δlevel = src_level - dst_level @@ -588,11 +645,14 @@ function formulate_flow!( # No flow out outlet if source level is lower than minimum crest level if src_level !== nothing - q *= reduction_factor(src_level - min_crest_level[i], 0.1) + q *= reduction_factor(src_level - min_crest_level, 0.1) end - set_flow!(graph, src_id, id, q) - set_flow!(graph, id, dst_id, q) + set_flow!(graph, inflow_edge, q) + + for outflow_edge in outflow_edges + set_flow!(graph, outflow_edge, q) + end end return nothing end @@ -600,18 +660,24 @@ end function formulate_du!( du::ComponentVector, graph::MetaGraph, - basin::Basin, storage::AbstractVector, )::Nothing # loop over basins # subtract all outgoing flows # add all ingoing flows - for (i, basin_id) in enumerate(basin.node_id) - for inflow_id in basin.inflow_ids[i] - du[i] += get_flow(graph, inflow_id, basin_id, storage) + for edge_metadata in values(graph.edge_data) + (; type, edge, basin_idx_src, basin_idx_dst) = edge_metadata + if type !== EdgeType.flow + continue end - for outflow_id in basin.outflow_ids[i] - du[i] -= get_flow(graph, basin_id, outflow_id, storage) + from_id, to_id = edge + + if from_id.type == NodeType.Basin + q = get_flow(graph, edge_metadata, storage) + du[basin_idx_src] -= q + elseif to_id.type == NodeType.Basin + q = get_flow(graph, edge_metadata, storage) + du[basin_idx_dst] += q end end return nothing diff --git a/core/src/util.jl b/core/src/util.jl index c0c84a89f..c0aeb28e2 100644 --- a/core/src/util.jl +++ b/core/src/util.jl @@ -89,7 +89,7 @@ end Compute the area and level of a basin given its storage. Also returns darea/dlevel as it is needed for the Jacobian. """ -function get_area_and_level(basin::Basin, state_idx::Int, storage::Real)::Tuple{Real, Real} +function get_area_and_level(basin::Basin, state_idx::Int, storage::T)::Tuple{T, T} where {T} storage_discrete = basin.storage[state_idx] area_discrete = basin.area[state_idx] level_discrete = basin.level[state_idx] @@ -98,11 +98,16 @@ function get_area_and_level(basin::Basin, state_idx::Int, storage::Real)::Tuple{ end function get_area_and_level( - storage_discrete::Vector, - area_discrete::Vector, - level_discrete::Vector, - storage::Real, -)::Tuple{Real, Real} + storage_discrete::AbstractVector, + area_discrete::AbstractVector, + level_discrete::AbstractVector, + storage::T, +)::Tuple{T, T} where {T} + + # Set type of area and level to prevent runtime dispatch + area::T = zero(T) + level::T = zero(T) + # storage_idx: smallest index such that storage_discrete[storage_idx] >= storage storage_idx = searchsortedfirst(storage_discrete, storage) @@ -111,13 +116,6 @@ function get_area_and_level( level = level_discrete[1] area = area_discrete[1] - level_lower = level - level_higher = level_discrete[2] - area_lower = area - area_higher = area_discrete[2] - - darea = (area_higher - area_lower) / (level_higher - level_lower) - elseif storage_idx == length(storage_discrete) + 1 # With a storage above the profile, use a linear extrapolation of area(level) # based on the last 2 values. @@ -128,20 +126,18 @@ function get_area_and_level( storage_lower = storage_discrete[end - 1] storage_higher = storage_discrete[end] - area_diff = area_higher - area_lower - level_diff = level_higher - level_lower + Δarea = area_higher - area_lower + Δlevel = level_higher - level_lower + Δstorage = storage_higher - storage_lower - if area_diff ≈ 0 + if Δarea ≈ 0.0 # Constant area means linear interpolation of level - darea = 0.0 area = area_lower - level = - level_higher + - level_diff * (storage - storage_higher) / (storage_higher - storage_lower) + level = level_higher + Δlevel * (storage - storage_higher) / Δstorage else - darea = area_diff / level_diff + darea = Δarea / Δlevel area = sqrt(area_higher^2 + 2 * (storage - storage_higher) * darea) - level = level_lower + level_diff * (area - area_lower) / area_diff + level = level_lower + Δlevel * (area - area_lower) / Δarea end else @@ -152,21 +148,19 @@ function get_area_and_level( storage_lower = storage_discrete[storage_idx - 1] storage_higher = storage_discrete[storage_idx] - area_diff = area_higher - area_lower - level_diff = level_higher - level_lower + Δarea = area_higher - area_lower + Δlevel = level_higher - level_lower + Δstorage = storage_higher - storage_lower - if area_diff ≈ 0 + if Δarea ≈ 0.0 # Constant area means linear interpolation of level - darea = 0.0 area = area_lower - level = - level_lower + - level_diff * (storage - storage_lower) / (storage_higher - storage_lower) + level = level_lower + Δlevel * (storage - storage_lower) / Δstorage else - darea = area_diff / level_diff + darea = Δarea / Δlevel area = sqrt(area_lower^2 + 2 * (storage - storage_lower) * darea) - level = level_lower + level_diff * (area - area_lower) / area_diff + level = level_lower + Δlevel * (area - area_lower) / Δarea end end @@ -201,7 +195,7 @@ function get_scalar_interpolation( node_id::NodeID, param::Symbol; default_value::Float64 = 0.0, -)::Tuple{LinearInterpolation, Bool} +)::Tuple{ScalarInterpolation, Bool} nodetype = node_id.type rows = searchsorted(NodeID.(nodetype, time.node_id), node_id) parameter = getfield.(time, param)[rows] @@ -249,25 +243,20 @@ function scalar_interpolation_derivative( end end -function qh_interpolation( - level::AbstractVector, - flow_rate::AbstractVector, -)::Tuple{LinearInterpolation, Bool} - return LinearInterpolation(flow_rate, level; extrapolate = true), allunique(level) -end - """ From a table with columns node_id, flow_rate (Q) and level (h), -create a LinearInterpolation from level to flow rate for a given node_id. +create a ScalarInterpolation from level to flow rate for a given node_id. """ -function qh_interpolation( - node_id::NodeID, - table::StructVector, -)::Tuple{LinearInterpolation, Bool} - nodetype = node_id.type - rowrange = findlastgroup(node_id, NodeID.(nodetype, table.node_id)) - @assert !isempty(rowrange) "timeseries starts after model start time" - return qh_interpolation(table.level[rowrange], table.flow_rate[rowrange]) +function qh_interpolation(node_id::NodeID, table::StructVector)::ScalarInterpolation + rowrange = findlastgroup(node_id, NodeID.(node_id.type, table.node_id)) + level = table.level[rowrange] + flow_rate = table.flow_rate[rowrange] + + # Ensure that that Q stays 0 below the first level + pushfirst!(level, first(level) - 1) + pushfirst!(flow_rate, first(flow_rate)) + + return LinearInterpolation(flow_rate, level; extrapolate = true) end """ @@ -369,20 +358,23 @@ storage: tells ForwardDiff whether this call is for differentiation or not """ function get_level( p::Parameters, + edge_metadata::EdgeMetadata, node_id::NodeID, t::Number; storage::Union{AbstractArray, Number} = 0, -)::Union{Real, Nothing} +)::Tuple{Bool, Number} (; basin, level_boundary) = p if node_id.type == NodeType.Basin - _, i = id_index(basin.node_id, node_id) + # The edge metadata is only used to obtain the Basin index + # in case node_id is for a Basin + i = get_basin_idx(edge_metadata, node_id) current_level = get_tmp(basin.current_level, storage) - current_level[i] + return true, current_level[i] elseif node_id.type == NodeType.LevelBoundary i = findsorted(level_boundary.node_id, node_id) - level_boundary.level[i](t) + return true, level_boundary.level[i](t) else - nothing + return false, 0.0 end end @@ -395,15 +387,15 @@ function id_index(ids::Indices{NodeID}, id::NodeID)::Tuple{Bool, Int} end "Return the bottom elevation of the basin with index i, or nothing if it doesn't exist" -function basin_bottom(basin::Basin, node_id::NodeID)::Union{Float64, Nothing} +function basin_bottom(basin::Basin, node_id::NodeID)::Tuple{Bool, Float64} hasindex, i = id_index(basin.node_id, node_id) return if hasindex # get level(storage) interpolation function level_discrete = basin.level[i] # and return the first level in this vector, representing the bottom - first(level_discrete) + return true, first(level_discrete) else - nothing + return false, 0.0 end end @@ -461,12 +453,6 @@ function expand_logic_mapping( return logic_mapping_expanded end -"""Get all node fieldnames of the parameter object.""" -nodefields(p::Parameters) = ( - name for - name in fieldnames(typeof(p)) if fieldtype(typeof(p), name) <: AbstractParameterNode -) - """ Get the node type specific indices of the fractional flows and basins, that are consecutively connected to a node of given id. @@ -551,13 +537,13 @@ end "If id is a Basin with storage below the threshold, return a reduction factor != 1" function low_storage_factor( storage::AbstractVector{T}, - basin_ids::Indices{NodeID}, + edge_metadata::EdgeMetadata, id::NodeID, threshold::Real, )::T where {T <: Real} - hasindex, basin_idx = id_index(basin_ids, id) - return if hasindex - reduction_factor(storage[basin_idx], threshold) + if id.type == NodeType.Basin + i = get_basin_idx(edge_metadata, id) + reduction_factor(storage[i], threshold) else one(T) end @@ -736,3 +722,31 @@ has_fractional_flow_outneighbors(graph::MetaGraph, node_id::NodeID)::Bool = any( outneighbor_id.type == NodeType.FractionalFlow for outneighbor_id in outflow_ids(graph, node_id) ) + +inflow_edge(graph, node_id)::EdgeMetadata = graph[inflow_id(graph, node_id), node_id] +outflow_edge(graph, node_id)::EdgeMetadata = graph[node_id, outflow_id(graph, node_id)] +outflow_edges(graph, node_id)::Vector{EdgeMetadata} = + [graph[node_id, outflow_id] for outflow_id in outflow_ids(graph, node_id)] + +function set_basin_idxs!(graph::MetaGraph, basin::Basin)::Nothing + for (edge, edge_metadata) in graph.edge_data + id_src, id_dst = edge + edge_metadata = + @set edge_metadata.basin_idx_src = id_index(basin.node_id, id_src)[2] + edge_metadata = + @set edge_metadata.basin_idx_dst = id_index(basin.node_id, id_dst)[2] + graph[edge...] = edge_metadata + end + return nothing +end + +function get_basin_idx(edge_metadata::EdgeMetadata, id::NodeID)::Int32 + (; edge) = edge_metadata + return if edge[1] == id + edge_metadata.basin_idx_src + elseif edge[2] == id + edge_metadata.basin_idx_dst + else + 0 + end +end diff --git a/core/src/validation.jl b/core/src/validation.jl index a00471892..a682b4a89 100644 --- a/core/src/validation.jl +++ b/core/src/validation.jl @@ -99,6 +99,7 @@ sort_by_id(row) = row.node_id sort_by_time_id(row) = (row.time, row.node_id) sort_by_id_level(row) = (row.node_id, row.level) sort_by_id_state_level(row) = (row.node_id, row.control_state, row.level) +sort_by_time_id_level(row) = (row.time, row.node_id, row.level) sort_by_priority(row) = (row.node_id, row.priority) sort_by_priority_time(row) = (row.node_id, row.priority, row.time) sort_by_subgrid_level(row) = (row.subgrid_id, row.basin_level) @@ -109,6 +110,7 @@ sort_by_condition(row) = (row.node_id, row.compound_variable_id, row.greater_tha # get the right sort by function given the Schema, with sort_by_id as the default sort_by_function(table::StructVector{<:Legolas.AbstractRecord}) = sort_by_id sort_by_function(table::StructVector{TabulatedRatingCurveStaticV1}) = sort_by_id_state_level +sort_by_function(table::StructVector{TabulatedRatingCurveTimeV1}) = sort_by_time_id_level sort_by_function(table::StructVector{BasinProfileV1}) = sort_by_id_level sort_by_function(table::StructVector{UserDemandStaticV1}) = sort_by_priority sort_by_function(table::StructVector{UserDemandTimeV1}) = sort_by_priority_time @@ -122,10 +124,8 @@ const TimeSchemas = Union{ FlowDemandTimeV1, LevelBoundaryTimeV1, PidControlTimeV1, - TabulatedRatingCurveTimeV1, UserDemandTimeV1, } - function sort_by_function(table::StructVector{<:TimeSchemas}) return sort_by_time_id end @@ -384,9 +384,7 @@ end function valid_demand( node_id::Vector{NodeID}, - demand_itp::Vector{ - Vector{LinearInterpolation{Vector{Float64}, Vector{Float64}, true, Float64}}, - }, + demand_itp::Vector{Vector{ScalarInterpolation}}, priorities::Vector{Int32}, )::Bool errors = false @@ -402,6 +400,37 @@ function valid_demand( return !errors end +function valid_tabulated_rating_curve(node_id::NodeID, table::StructVector)::Bool + errors = false + + rowrange = findlastgroup(node_id, NodeID.(node_id.type, table.node_id)) + level = table.level[rowrange] + flow_rate = table.flow_rate[rowrange] + + n = length(level) + if n < 2 + @error "At least two datapoints are needed." node_id n + errors = true + end + Q0 = first(flow_rate) + if Q0 != 0.0 + @error "The `flow_rate` must start at 0." node_id flow_rate = Q0 + errors = true + end + + if !allunique(level) + @error "The `level` cannot be repeated." node_id + errors = true + end + + if any(diff(flow_rate) .< 0.0) + @error "The `flow_rate` cannot decrease with increasing `level`." node_id + errors = true + end + + return !errors +end + function incomplete_subnetwork(graph::MetaGraph, node_ids::Dict{Int32, Set{NodeID}})::Bool errors = false for (subnetwork_id, subnetwork_node_ids) in node_ids @@ -429,50 +458,49 @@ end Test for each node given its node type whether it has an allowed number of flow/control inneighbors and outneighbors """ -function valid_n_neighbors(p::Parameters)::Bool - (; graph) = p - +function valid_n_neighbors(graph::MetaGraph)::Bool errors = false - for nodefield in nodefields(p) - errors |= !valid_n_neighbors(getfield(p, nodefield), graph) + for nodetype in nodetypes + errors |= !valid_n_neighbors(nodetype, graph) end return !errors end -function valid_n_neighbors(node::AbstractParameterNode, graph::MetaGraph)::Bool - node_type = typeof(node) - node_name = nameof(node_type) - +function valid_n_neighbors(node_name::Symbol, graph::MetaGraph)::Bool + node_type = NodeType.T(node_name) bounds_flow = n_neighbor_bounds_flow(node_name) bounds_control = n_neighbor_bounds_control(node_name) errors = false - - for id in node.node_id + # return !errors + for node_id in labels(graph) + node_id.type == node_type || continue for (bounds, edge_type) in zip((bounds_flow, bounds_control), (EdgeType.flow, EdgeType.control)) - n_inneighbors = count(x -> true, inneighbor_labels_type(graph, id, edge_type)) - n_outneighbors = count(x -> true, outneighbor_labels_type(graph, id, edge_type)) + n_inneighbors = + count(x -> true, inneighbor_labels_type(graph, node_id, edge_type)) + n_outneighbors = + count(x -> true, outneighbor_labels_type(graph, node_id, edge_type)) if n_inneighbors < bounds.in_min - @error "$id must have at least $(bounds.in_min) $edge_type inneighbor(s) (got $n_inneighbors)." + @error "$node_id must have at least $(bounds.in_min) $edge_type inneighbor(s) (got $n_inneighbors)." errors = true end if n_inneighbors > bounds.in_max - @error "$id can have at most $(bounds.in_max) $edge_type inneighbor(s) (got $n_inneighbors)." + @error "$node_id can have at most $(bounds.in_max) $edge_type inneighbor(s) (got $n_inneighbors)." errors = true end if n_outneighbors < bounds.out_min - @error "$id must have at least $(bounds.out_min) $edge_type outneighbor(s) (got $n_outneighbors)." + @error "$node_id must have at least $(bounds.out_min) $edge_type outneighbor(s) (got $n_outneighbors)." errors = true end if n_outneighbors > bounds.out_max - @error "$id can have at most $(bounds.out_max) $edge_type outneighbor(s) (got $n_outneighbors)." + @error "$node_id can have at most $(bounds.out_max) $edge_type outneighbor(s) (got $n_outneighbors)." errors = true end end diff --git a/core/src/write.jl b/core/src/write.jl index 1f2ed07d4..da89faade 100644 --- a/core/src/write.jl +++ b/core/src/write.jl @@ -315,12 +315,11 @@ function subgrid_level_table( (; t, saveval) = saved.subgrid_level subgrid = integrator.p.subgrid - nelem = length(subgrid.basin_index) + nelem = length(subgrid.subgrid_id) ntsteps = length(t) - unique_elem_id = collect(1:nelem) time = repeat(datetime_since.(t, config.starttime); inner = nelem) - subgrid_id = repeat(unique_elem_id; outer = ntsteps) + subgrid_id = repeat(subgrid.subgrid_id; outer = ntsteps) subgrid_level = FlatVector(saveval) return (; time, subgrid_id, subgrid_level) end diff --git a/core/test/aqua_test.jl b/core/test/aqua_test.jl index 13a0c0f51..b054d2f60 100644 --- a/core/test/aqua_test.jl +++ b/core/test/aqua_test.jl @@ -1,4 +1,4 @@ @testitem "Aqua" begin import Aqua - Aqua.test_all(Ribasim; ambiguities = false, persistent_tasks = false) + Aqua.test_all(Ribasim; ambiguities = false) end diff --git a/core/test/control_test.jl b/core/test/control_test.jl index 1bee012a9..6a1948a38 100644 --- a/core/test/control_test.jl +++ b/core/test/control_test.jl @@ -147,7 +147,7 @@ end t = Ribasim.datetime_since(discrete_control.record.time[2], model.config.starttime) @test Date(t) == Date("2020-03-16") # then the rating curve is updated to the "low" control_state - @test only(p.tabulated_rating_curve.tables).t[2] == 1.2 + @test last(only(p.tabulated_rating_curve.tables).t) == 1.2 end @testitem "Set PID target with DiscreteControl" begin diff --git a/core/test/data/config_test.toml b/core/test/data/config_test.toml index a3ecfbe44..a1a0d9f80 100644 --- a/core/test/data/config_test.toml +++ b/core/test/data/config_test.toml @@ -3,7 +3,7 @@ endtime = 2019-12-31 crs = "EPSG:28992" input_dir = "../../generated_testmodels/lhm" results_dir = "../../generated_testmodels/lhm" -ribasim_version = "2024.7.0" +ribasim_version = "2024.8.0" [basin] time = "basin/time.arrow" diff --git a/core/test/data/logging_test_loglevel_debug.toml b/core/test/data/logging_test_loglevel_debug.toml index 9c3041d27..884191315 100644 --- a/core/test/data/logging_test_loglevel_debug.toml +++ b/core/test/data/logging_test_loglevel_debug.toml @@ -3,7 +3,7 @@ endtime = 2019-12-31 crs = "EPSG:28992" input_dir = "." results_dir = "results" -ribasim_version = "2024.7.0" +ribasim_version = "2024.8.0" [logging] verbosity = "debug" diff --git a/core/test/data/logging_test_no_loglevel.toml b/core/test/data/logging_test_no_loglevel.toml index 8e44fc276..333c8c2ef 100644 --- a/core/test/data/logging_test_no_loglevel.toml +++ b/core/test/data/logging_test_no_loglevel.toml @@ -3,4 +3,4 @@ endtime = 2019-12-31 crs = "EPSG:28992" input_dir = "." results_dir = "results" -ribasim_version = "2024.7.0" +ribasim_version = "2024.8.0" diff --git a/core/test/docs.toml b/core/test/docs.toml index 341eb6111..f59c7b0a8 100644 --- a/core/test/docs.toml +++ b/core/test/docs.toml @@ -12,7 +12,7 @@ crs = "EPSG:4326" # required input_dir = "." # required results_dir = "results" # required -ribasim_version = "2024.7.0" # required +ribasim_version = "2024.8.0" # required # Specific tables can also go into Arrow files rather than the database. # For large tables this can benefit from better compressed file sizes. diff --git a/core/test/docs_test.jl b/core/test/docs_test.jl deleted file mode 100644 index 1f2e78f8c..000000000 --- a/core/test/docs_test.jl +++ /dev/null @@ -1,7 +0,0 @@ -@testitem "Doctests" begin - using Documenter - - DocMeta.setdocmeta!(Ribasim, :DocTestSetup, :(using Ribasim); recursive = true) - - doctest(Ribasim; manual = false) -end diff --git a/core/test/run_models_test.jl b/core/test/run_models_test.jl index 5c9037cd2..45fa53f73 100644 --- a/core/test/run_models_test.jl +++ b/core/test/run_models_test.jl @@ -147,8 +147,7 @@ basin_level = basin.level[1] @test length(p.subgrid.level) == 3 @test diff(p.subgrid.level) ≈ [-1.0, 2.0] - # TODO The original subgrid IDs are lost and mapped to 1, 2, 3 - @test subgrid.subgrid_id[1:3] == [11, 22, 33] broken = true + @test subgrid.subgrid_id[1:3] == [11, 22, 33] @test subgrid.subgrid_level[1:3] ≈ [basin_level, basin_level - 1.0, basin_level + 1.0] @test subgrid.subgrid_level[(end - 2):end] == p.subgrid.level diff --git a/core/test/utils_test.jl b/core/test/utils_test.jl index fab1b3ab1..50bfe9076 100644 --- a/core/test/utils_test.jl +++ b/core/test/utils_test.jl @@ -55,9 +55,9 @@ end ) @test basin.level[2][1] === 4.0 - @test Ribasim.basin_bottom(basin, NodeID(:Basin, 5)) === 0.0 - @test Ribasim.basin_bottom(basin, NodeID(:Basin, 7)) === 4.0 - @test Ribasim.basin_bottom(basin, NodeID(:Basin, 6)) === nothing + @test Ribasim.basin_bottom(basin, NodeID(:Basin, 5))[2] === 0.0 + @test Ribasim.basin_bottom(basin, NodeID(:Basin, 7))[2] === 4.0 + @test !Ribasim.basin_bottom(basin, NodeID(:Basin, 6))[1] end @testitem "Convert levels to storages" begin @@ -240,64 +240,66 @@ end end @testitem "low_storage_factor" begin - using Ribasim: NodeID, low_storage_factor, Indices - @test low_storage_factor( - [-2.0], - Indices(NodeID.(:Basin, [5])), - NodeID(:Basin, 5), - 2.0, - ) === 0.0 - @test low_storage_factor( - [0.0f0], - Indices(NodeID.(:Basin, [5])), - NodeID(:Basin, 5), - 2.0, - ) === 0.0f0 - @test low_storage_factor( - [0.0], - Indices(NodeID.(:Basin, [5])), - NodeID(:Basin, 5), - 2.0, - ) === 0.0 - @test low_storage_factor( - [1.0f0], - Indices(NodeID.(:Basin, [5])), - NodeID(:Basin, 5), - 2.0, - ) === 0.5f0 - @test low_storage_factor( - [1.0], - Indices(NodeID.(:Basin, [5])), - NodeID(:Basin, 5), - 2.0, - ) === 0.5 - @test low_storage_factor( - [3.0f0], - Indices(NodeID.(:Basin, [5])), - NodeID(:Basin, 5), - 2.0, - ) === 1.0f0 - @test low_storage_factor( - [3.0], - Indices(NodeID.(:Basin, [5])), - NodeID(:Basin, 5), - 2.0, - ) === 1.0 + using Ribasim: NodeID, low_storage_factor, EdgeMetadata, EdgeType + + node_id = NodeID(:Basin, 5) + edge_metadata = EdgeMetadata(0, 0, EdgeType.flow, 0, (node_id, node_id), 1, 1) + @test low_storage_factor([-2.0], edge_metadata, node_id, 2.0) === 0.0 + @test low_storage_factor([0.0f0], edge_metadata, node_id, 2.0) === 0.0f0 + @test low_storage_factor([0.0], edge_metadata, node_id, 2.0) === 0.0 + @test low_storage_factor([1.0f0], edge_metadata, node_id, 2.0) === 0.5f0 + @test low_storage_factor([1.0], edge_metadata, node_id, 2.0) === 0.5 + @test low_storage_factor([3.0f0], edge_metadata, node_id, 2.0) === 1.0f0 + @test low_storage_factor([3.0], edge_metadata, node_id, 2.0) === 1.0 end @testitem "constraints_from_nodes" begin + using Ribasim: Model, snake_case, nodetypes, is_flow_constraining + toml_path = normpath(@__DIR__, "../../generated_testmodels/basic/ribasim.toml") @test ispath(toml_path) - model = Ribasim.Model(toml_path) + model = Model(toml_path) (; p) = model.integrator - constraining_types = (:pump, :outlet, :linear_resistance) + constraining_types = (:Pump, :Outlet, :LinearResistance) - for type in Ribasim.nodefields(p) - node = getfield(p, type) + for type in nodetypes + type == :Terminal && continue # has no parameter field + node = getfield(p, snake_case(type)) if type in constraining_types - @test Ribasim.is_flow_constraining(node) + @test is_flow_constraining(node) else - @test !Ribasim.is_flow_constraining(node) + @test !is_flow_constraining(node) + end + end +end + +@testitem "Node types" begin + using Ribasim: nodetypes, NodeType, Parameters, AbstractParameterNode, snake_case + + @test Set(nodetypes) == Set([ + :Terminal, + :PidControl, + :LevelBoundary, + :Pump, + :UserDemand, + :TabulatedRatingCurve, + :FlowDemand, + :FlowBoundary, + :Basin, + :ManningResistance, + :LevelDemand, + :DiscreteControl, + :Outlet, + :LinearResistance, + :FractionalFlow, + ]) + for nodetype in nodetypes + NodeType.T(nodetype) + if nodetype != :Terminal + # It has a struct which is added to Parameters + T = getproperty(Ribasim, nodetype) + @test T <: AbstractParameterNode + @test hasfield(Parameters, snake_case(nodetype)) end end end diff --git a/core/test/validation_test.jl b/core/test/validation_test.jl index 4055d50a4..9184f09d7 100644 --- a/core/test/validation_test.jl +++ b/core/test/validation_test.jl @@ -1,8 +1,8 @@ @testitem "Basin profile validation" begin using Dictionaries: Indices - using Ribasim: NodeID, valid_profiles, qh_interpolation - using DataInterpolations: LinearInterpolation + using Ribasim: NodeID, valid_profiles, qh_interpolation, ScalarInterpolation using Logging + using StructArrays: StructVector node_id = Indices([NodeID(:Basin, 1)]) level = [[0.0, 0.0, 1.0]] @@ -25,12 +25,15 @@ @test logger.logs[3].message == "Basin #1 profile cannot have decreasing area at the top since extrapolating could lead to negative areas." - itp, valid = qh_interpolation([0.0, 0.0], [1.0, 2.0]) - @test !valid - @test itp isa LinearInterpolation - itp, valid = qh_interpolation([0.0, 0.1], [1.0, 2.0]) - @test valid - @test itp isa LinearInterpolation + table = StructVector(; flow_rate = [0.0, 0.1], level = [1.0, 2.0], node_id = [5, 5]) + itp = qh_interpolation(NodeID(:TabulatedRatingCurve, 5), table) + # constant extrapolation at the bottom end, linear extrapolation at the top end + itp(0.0) ≈ 0.0 + itp(1.0) ≈ 0.0 + itp(1.5) ≈ 0.05 + itp(2.0) ≈ 0.1 + itp(3.0) ≈ 0.2 + @test itp isa ScalarInterpolation end @testitem "Q(h) validation" begin @@ -43,21 +46,26 @@ end config = Ribasim.Config(toml_path) db_path = Ribasim.input_path(config, config.database) db = SQLite.DB(db_path) + graph = Ribasim.create_graph(db, config, [1]) logger = TestLogger() with_logger(logger) do @test_throws "Errors occurred when parsing TabulatedRatingCurve data." Ribasim.TabulatedRatingCurve( db, config, + graph, ) end - @test length(logger.logs) == 2 + close(db) + + @test length(logger.logs) == 3 @test logger.logs[1].level == Error - @test logger.logs[1].message == - "A Q(h) relationship for TabulatedRatingCurve #1 from the static table has repeated levels, this can not be interpolated." + @test logger.logs[1].message == "The `flow_rate` must start at 0." @test logger.logs[2].level == Error - @test logger.logs[2].message == - "A Q(h) relationship for TabulatedRatingCurve #2 from the time table has repeated levels, this can not be interpolated." + @test logger.logs[2].message == "The `level` cannot be repeated." + @test logger.logs[3].level == Error + @test logger.logs[3].message == + "The `flow_rate` cannot decrease with increasing `level`." end @testitem "Neighbor count validation" begin @@ -82,7 +90,7 @@ end graph[NodeID(:Pump, 6)] = NodeMetadata(:pump, 9) function set_edge_metadata!(id_1, id_2, edge_type) - graph[id_1, id_2] = EdgeMetadata(0, edge_type, 0, (id_1, id_2)) + graph[id_1, id_2] = EdgeMetadata(0, 0, edge_type, 0, (id_1, id_2), -1, -1) return nothing end @@ -91,19 +99,9 @@ end set_edge_metadata!(NodeID(:Pump, 6), NodeID(:Basin, 2), EdgeType.flow) set_edge_metadata!(NodeID(:FractionalFlow, 5), NodeID(:Pump, 6), EdgeType.control) - pump = Ribasim.Pump( - NodeID.(:Pump, [1, 6]), - [true, true], - [0.0, 0.0], - [0.0, 0.0], - [1.0, 1.0], - Dict{Tuple{NodeID, String}, NamedTuple}(), - falses(2), - ) - logger = TestLogger() with_logger(logger) do - @test !Ribasim.valid_n_neighbors(pump, graph) + @test !Ribasim.valid_n_neighbors(:Pump, graph) end @test length(logger.logs) == 3 @@ -120,15 +118,9 @@ end set_edge_metadata!(NodeID(:FractionalFlow, 5), NodeID(:Basin, 3), EdgeType.flow) set_edge_metadata!(NodeID(:FractionalFlow, 5), NodeID(:Basin, 4), EdgeType.flow) - fractional_flow = Ribasim.FractionalFlow( - [NodeID(:FractionalFlow, 5)], - [1.0], - Dict{Tuple{NodeID, String}, NamedTuple}(), - ) - logger = TestLogger(; min_level = Debug) with_logger(logger) do - @test !Ribasim.valid_n_neighbors(fractional_flow, graph) + @test !Ribasim.valid_n_neighbors(:FractionalFlow, graph) end @test length(logger.logs) == 2 @@ -175,7 +167,7 @@ end graph[NodeID(:Basin, 7)] = NodeMetadata(:basin, 0) function set_edge_metadata!(id_1, id_2, edge_type) - graph[id_1, id_2] = EdgeMetadata(0, edge_type, 0, (id_1, id_2)) + graph[id_1, id_2] = EdgeMetadata(0, 0, edge_type, 0, (id_1, id_2), -1, -1) return nothing end @@ -224,7 +216,7 @@ end db_path = Ribasim.input_path(config, config.database) db = SQLite.DB(db_path) graph = Ribasim.create_graph(db, config, [1, 1]) - fractional_flow = Ribasim.FractionalFlow(db, config) + fractional_flow = Ribasim.FractionalFlow(db, config, graph) logger = TestLogger() with_logger(logger) do @@ -305,6 +297,8 @@ end with_logger(logger) do @test_throws "Invalid Outlet flow rate(s)." Ribasim.Outlet( [NodeID(:Outlet, 1)], + NodeID[], + [NodeID[]], [true], [-1.0], [NaN], @@ -324,6 +318,8 @@ end with_logger(logger) do @test_throws "Invalid Pump flow rate(s)." Ribasim.Pump( [NodeID(:Pump, 1)], + NodeID[], + [NodeID[]], [true], [-1.0], [NaN], @@ -420,6 +416,8 @@ end with_logger(logger) do @test_throws "Invalid demand" Ribasim.UserDemand( [NodeID(:UserDemand, 1)], + NodeID[], + NodeID[], [true], [0.0], [0.0], @@ -458,3 +456,40 @@ end dt, ) end + +@testitem "basin indices" begin + using Ribasim: NodeType + + toml_path = normpath(@__DIR__, "../../generated_testmodels/basic/ribasim.toml") + @test ispath(toml_path) + + model = Ribasim.Model(toml_path) + (; graph, basin) = model.integrator.p + for edge_metadata in values(graph.edge_data) + (; edge, basin_idx_src, basin_idx_dst) = edge_metadata + id_src, id_dst = edge + if id_src.type == NodeType.Basin + @test id_src == basin.node_id.values[basin_idx_src] + elseif id_dst.type == NodeType.Basin + @test id_dst == basin.node_id.values[basin_idx_dst] + end + end +end + +@testitem "Convergence bottleneck" begin + using IOCapture: capture + toml_path = + normpath(@__DIR__, "../../generated_testmodels/invalid_unstable/ribasim.toml") + @test ispath(toml_path) + (; output) = capture() do + Ribasim.main(toml_path) + end + output = split(output, "\n")[(end - 4):end] + @test startswith( + output[1], + "The following basins were identified as convergence bottlenecks", + ) + @test startswith(output[2], "Basin #11") + @test startswith(output[3], "Basin #31") + @test startswith(output[4], "Basin #51") +end diff --git a/coupling/delwaq/.gitignore b/coupling/delwaq/.gitignore new file mode 100644 index 000000000..2f6df2647 --- /dev/null +++ b/coupling/delwaq/.gitignore @@ -0,0 +1,5 @@ +model +*.map +*.nc +*.pdf +*.out diff --git a/coupling/delwaq/README.md b/coupling/delwaq/README.md new file mode 100644 index 000000000..c21bc9c46 --- /dev/null +++ b/coupling/delwaq/README.md @@ -0,0 +1,47 @@ +# Ribasim Delwaq coupling +This folder contains scripts to setup a Delwaq model from a Ribasim model, and to update the Ribasim model with the Delwaq output. + +## Steps +Setup a Ribasim model with substances and concentrations and run it. For example, we can run the basic testmodel with some default concentrations using the Ribasim CLI: + +```bash +ribasim generated_testmodels/basic/ribasim.toml +``` + +Afterwards we can use the Ribasim model and the generated output to setup a Delwaq model using Python from this folder. + +```python +from pathlib import Path + +from generate import generate +from parse import parse +from util import run_delwaq + +toml_path = Path("generated_testmodels/basic/ribasim.toml") + +graph, substances = generate(toml_path) +run_delwaq() +model = parse(toml_path, graph, substances) +``` + +The resulting Ribasim model will have an updated `model.basin.concentration_external` table with the Delwaq output. +We also store the same table in the `basin_concentration_external.arrow` file in the results folder, which can be +referred to using the Ribasim config file. + +## Running Delwaq +If you have access to a DIMR release, you can find the Delwaq executables in the `bin` folder. You can run a model directly with the `run_dimr.bat` script, and providing the path to the generated `.inp` file to it. In `util.py` we provide a `run_delwaq` (as used above) that does this for you, if you set the `D3D_HOME` environment variable to the path of the unzipped DIMR release, using the generated `model/ribasim.inp` configuration file. + +### Running Delwaq with Docker +Alternative to running Delwaq with a DIMR release, you can also run the Delwaq model in a Docker container if you are a Deltares employee. +First install WSL and install docker in WSL, then create a CLI secret and log into the Deltares containers. To install docker in WSL and create a CLI secret for the following steps, follow this guide https://publicwiki.deltares.nl/display/Delft3DContainers/. + +Log into Deltares containers in docker: +```bash +docker login containers.deltares.nl # use your deltares email + token +``` + +You can now run the Delwaq model from this directory. +```bash +docker run --mount type=bind,source="$(pwd)/model",target=/mnt/myModel \ + --workdir /mnt/myModel containers.deltares.nl/delft3d/delft3dfm run_dimr.sh +``` diff --git a/coupling/delwaq/generate.py b/coupling/delwaq/generate.py new file mode 100644 index 000000000..6ea139bf2 --- /dev/null +++ b/coupling/delwaq/generate.py @@ -0,0 +1,379 @@ +"""Setup a Delwaq model from a Ribasim model and results.""" + +import csv +import shutil +from datetime import timedelta +from pathlib import Path + +import networkx as nx +import numpy as np +import pandas as pd +import ribasim +from jinja2 import Environment, FileSystemLoader +from util import ( + strfdelta, + ugrid, + write_flows, + write_pointer, + write_volumes, +) + +delwaq_dir = Path(__file__).parent + +env = Environment(autoescape=True, loader=FileSystemLoader(delwaq_dir / "template")) + +# Add evaporation edges, so mass balance is correct +# To simulate salt increase due to evaporation, set to False +USE_EVAP = True + + +def generate(toml_path: Path) -> tuple[nx.DiGraph, set[str]]: + """Generate a Delwaq model from a Ribasim model and results.""" + + # Read in model and results + model = ribasim.Model.read(toml_path) + basins = pd.read_feather(toml_path.parent / "results" / "basin.arrow") + flows = pd.read_feather(toml_path.parent / "results" / "flow.arrow") + + output_folder = delwaq_dir / "model" + output_folder.mkdir(exist_ok=True) + + # Setup flow network + G = nx.DiGraph() + for row in model.node_table().df.itertuples(): + if row.node_type not in ribasim.geometry.edge.SPATIALCONTROLNODETYPES: + G.add_node( + row.node_id, + type=row.node_type, + id=row.node_id, + x=row.geometry.x, + y=row.geometry.y, + pos=(row.geometry.x, row.geometry.y), + ) + for row in model.edge.df.itertuples(): + if row.edge_type == "flow": + G.add_edge(row.from_node_id, row.to_node_id, id=[row.Index], duplicate=None) + + # Simplify network, only keeping Basins and Boundaries. + # We find an unwanted node, remove it, + # and merge the flow edges to/from the node. + remove_nodes = [] + for node_id, out in G.succ.items(): + if G.nodes[node_id]["type"] not in [ + "Basin", + "Terminal", + "LevelBoundary", + "FlowBoundary", + "UserDemand", + ]: + inneighbor_ids = G.pred[node_id] + assert len(inneighbor_ids) == 1 + inneighbor_id = list(inneighbor_ids)[0] + remove_nodes.append(node_id) + + for outneighbor_id in out.keys(): + if outneighbor_id in remove_nodes: + print("Not making edge to removed node.") + continue + edge = (inneighbor_id, outneighbor_id) + edge_id = G.get_edge_data(node_id, outneighbor_id)["id"][0] + if G.has_edge(*edge): + data = G.get_edge_data(*edge) + data["id"].append(edge_id) + else: + G.add_edge(*edge, id=[edge_id]) + + for node_id in remove_nodes: + G.remove_node(node_id) + + # Due to the simplification, we can end up with cycles of length 2. + # This happens when a UserDemand is connected to and from a Basin, + # but can also happen in other cases (rivers with a outlet and pump), + # for which we do nothing. We merge these UserDemand cycles edges to + # a single edge, and later merge the flows. + merge_edges = [] + for loop in nx.simple_cycles(G): + if len(loop) == 2: + if ( + G.nodes[loop[0]]["type"] != "UserDemand" + and G.nodes[loop[1]]["type"] != "UserDemand" + ): + print("Found cycle that is not a UserDemand.") + else: + edge_ids = G.edges[*loop]["id"] + G.edges[*reversed(loop)]["id"].extend(edge_ids) + merge_edges.extend(edge_ids) + G.remove_edge(*loop) + + # Relabel the nodes as consecutive integers for Delwaq + # Note that the node["id"] is the original node_id + basin_id = 0 + boundary_id = 0 + node_mapping = {} + for node_id, node in G.nodes.items(): + if node["type"] == "Basin": + basin_id += 1 + node_mapping[node_id] = basin_id + elif node["type"] in [ + "Terminal", + "UserDemand", + "LevelBoundary", + "FlowBoundary", + ]: + boundary_id -= 1 + node_mapping[node_id] = boundary_id + else: + raise Exception("Found unexpected node $node_id in delwaq graph.") + + nx.relabel_nodes(G, node_mapping, copy=False) + + # Add basin boundaries + for node_id, node in list(G.nodes(data=True)): + if node["type"] == "Basin": + boundary_id -= 1 + G.add_node( + boundary_id, + type="Drainage", + id=node["id"], + pos=(node["pos"][0] - 0.2, node["pos"][1] + 0.2), + ) + G.add_edge( + boundary_id, + node_id, + key=edge_id, + id=[-1], + boundary=(node["id"], "drainage"), + ) + + boundary_id -= 1 + G.add_node( + boundary_id, + type="Precipitation", + id=node["id"], + pos=(node["pos"][0] + 0, node["pos"][1] + 0.2), + ) + G.add_edge( + boundary_id, + node_id, + key=edge_id, + id=[-1], + boundary=(node["id"], "precipitation"), + ) + + if USE_EVAP: + boundary_id -= 1 + G.add_node( + boundary_id, + type="Evaporation", + id=node["id"], + pos=(node["pos"][0] + 0.2, node["pos"][1] + 0.2), + ) + G.add_edge( + node_id, + boundary_id, + key=edge_id, + id=[-1], + boundary=(node["id"], "evaporation"), + ) + + # Setup edge mapping + edge_mapping = {} + for i, (a, b, d) in enumerate(G.edges(data=True)): + for edge_id in d["id"]: + edge_mapping[edge_id] = i + + # Plot + # nx.draw( + # G, + # pos={k: v["pos"] for k, v in G.nodes(data=True)}, + # with_labels=True, + # labels={k: v["id"] for k, v in G.nodes(data=True)}, + # ) + + # Setup metadata + if model.solver.saveat == 0 or np.isposinf(model.solver.saveat): + raise ValueError("Unsupported saveat, must be positive and finite.") + else: + timestep = timedelta(seconds=model.solver.saveat) + + # Write topology to delwaq pointer file + pointer = pd.DataFrame(G.edges(), columns=["from_node_id", "to_node_id"]) + pointer.to_csv(output_folder / "network.csv", index=False) # not needed + write_pointer(output_folder / "ribasim.poi", pointer) + + total_segments = basin_id + total_exchanges = len(pointer) + + # Write attributes template + template = env.get_template("delwaq.atr.j2") + with open(output_folder / "ribasim.atr", mode="w") as f: + f.write( + template.render( + nsegments=total_segments, + ) + ) + + # Generate mesh and write to NetCDF + uds = ugrid(G) + uds.ugrid.to_netcdf(output_folder / "ribasim.nc") + + # Generate area and flows + # File format is int32, float32 based + # Time is internal clock, not real time! + flows.time = (flows.time - flows.time[0]).dt.total_seconds().astype("int32") + basins.time = (basins.time - basins.time[0]).dt.total_seconds().astype("int32") + + # Invert flows for half-edge of cycles so later summing is correct + m = flows.edge_id.isin(merge_edges) + flows.loc[m, "flow_rate"] = flows.loc[m, "flow_rate"] * -1 + + # Map edge_id to the new edge_id and merge any duplicate flows + flows["edge_id"] = flows["edge_id"].map(edge_mapping) + flows.dropna(subset=["edge_id"], inplace=True) + flows["edge_id"] = flows["edge_id"].astype("int32") + nflows = flows.copy() + nflows = flows.groupby(["time", "edge_id"]).sum().reset_index() + nflows.drop( + columns=["from_node_id", "from_node_type", "to_node_id", "to_node_type"], + inplace=True, + ) + + # Add basin boundaries to flows + for edge_id, (a, b, (node_id, boundary_type)) in enumerate( + G.edges(data="boundary", default=(None, None)) + ): + if boundary_type is None: + continue + df = basins[basins.node_id == node_id][["time", boundary_type]].rename( + columns={boundary_type: "flow_rate"} + ) + df["edge_id"] = edge_id + nflows = pd.concat([nflows, df], ignore_index=True) + + # Save flows to Delwaq format + nflows.sort_values(by=["time", "edge_id"], inplace=True) + nflows.to_csv(output_folder / "flows.csv", index=False) # not needed + nflows.drop( + columns=["edge_id"], + inplace=True, + ) + write_flows(output_folder / "ribasim.flo", nflows, timestep) + write_flows( + output_folder / "ribasim.are", nflows, timestep + ) # same as flow, so area becomes 1 + + # Write volumes to Delwaq format + basins.drop(columns=["level"], inplace=True) + volumes = basins[["time", "node_id", "storage"]] + volumes.loc[:, "node_id"] = ( + volumes["node_id"].map(node_mapping).astype(pd.Int32Dtype()) + ) + volumes = volumes.sort_values(by=["time", "node_id"]) + volumes.to_csv(output_folder / "volumes.csv", index=False) # not needed + volumes.drop(columns=["node_id"], inplace=True) + write_volumes(output_folder / "ribasim.vol", volumes, timestep) + write_volumes( + output_folder / "ribasim.vel", volumes, timestep + ) # same as volume, so vel becomes 1 + + # Length file + # Timestep and flattened (2, nsegments) of identical lengths + # for left right, so 0, 1., 1., 3., 3., 4., 4. etc. + # TODO(Maarten) Make use of geometry to calculate lengths + lengths = nflows.copy() + lengths.flow_rate = 1 + lengths.iloc[np.repeat(np.arange(len(lengths)), 2)] + write_flows(output_folder / "ribasim.len", lengths, timestep) + + # Find all boundary substances and concentrations + boundaries = [] + substances = set() + + def make_boundary(id, type): + # Delwaq has a limit of 12 characters for the boundary name + return type[:9] + "_" + str(id) + + assert model.level_boundary.concentration.df is not None + for i, row in model.level_boundary.concentration.df.groupby(["node_id"]): + row = row.drop_duplicates(subset=["substance"]) + bid = make_boundary(row.node_id.iloc[0], "LevelBoundary") + boundaries.append( + { + "name": bid, + "concentrations": row.concentration.to_list(), + "substances": row.substance.to_list(), + } + ) + substances.update(row.substance) + + assert model.flow_boundary.concentration.df is not None + for i, row in model.flow_boundary.concentration.df.groupby("node_id"): + row = row.drop_duplicates(subset=["substance"]) + bid = make_boundary(row.node_id.iloc[0], "FlowBoundary") + boundaries.append( + { + "name": bid, + "concentrations": row.concentration.to_list(), + "substances": row.substance.to_list(), + } + ) + substances.update(row.substance) + + # Write boundary data with substances and concentrations + template = env.get_template("B5_bounddata.inc.j2") + with open(output_folder / "B5_bounddata.inc", mode="w") as f: + f.write( + template.render( + states=[], # no states yet + boundaries=boundaries, + ) + ) + + # Write boundary list, ordered by bid to map the unique boundary names + # to the edges described in the pointer file. + bnd = pointer.copy() + bnd["bid"] = np.minimum(bnd["from_node_id"], bnd["to_node_id"]) + bnd = bnd[bnd["bid"] < 0] + bnd.sort_values(by="bid", ascending=False, inplace=True) + bnd["node_type"] = [G.nodes(data="type")[bid] for bid in bnd["bid"]] + bnd["node_id"] = [G.nodes(data="id")[bid] for bid in bnd["bid"]] + bnd["fid"] = list(map(make_boundary, bnd["node_id"], bnd["node_type"])) + bnd["comment"] = "" + bnd = bnd[["fid", "comment", "node_type"]] + bnd.to_csv( + output_folder / "ribasim_bndlist.inc", + index=False, + header=False, + sep=" ", + quotechar="'", + quoting=csv.QUOTE_ALL, + ) + + # Setup DIMR configuration for running Delwaq via DIMR + dimrc = delwaq_dir / "reference/dimr_config.xml" + shutil.copy(dimrc, output_folder / "dimr_config.xml") + + # Write main Delwaq input file + template = env.get_template("delwaq.inp.j2") + with open(output_folder / "delwaq.inp", mode="w") as f: + f.write( + template.render( + startime=model.starttime, + endtime=model.endtime - timestep, + timestep=strfdelta(timestep), + nsegments=total_segments, + nexchanges=total_exchanges, + substances=substances, + ) + ) + + # Return the graph with original edges and the substances + # so we can parse the results back to the original model + return G, substances + + +if __name__ == "__main__": + # Generate a Delwaq model from the default Ribasim model + repo_dir = delwaq_dir.parents[1] + toml_path = repo_dir / "generated_testmodels/basic/ribasim.toml" + graph, substances = generate(toml_path) diff --git a/coupling/delwaq/parse.py b/coupling/delwaq/parse.py new file mode 100644 index 000000000..9bb6616aa --- /dev/null +++ b/coupling/delwaq/parse.py @@ -0,0 +1,52 @@ +"""Read a Delwaq model generated from a Ribasim model and inject the results back to Ribasim.""" + +from pathlib import Path + +import pandas as pd +import ribasim +import xarray as xr +import xugrid as xu + +delwaq_dir = Path(__file__).parent +repo_dir = delwaq_dir.parents[1] +output_folder = delwaq_dir / "model" + + +def parse(toml_path: Path, graph, substances) -> ribasim.Model: + model = ribasim.Model.read(toml_path) + + # Output of Delwaq + ds = xr.open_dataset(output_folder / "delwaq_map.nc") + ug = xu.UgridDataset(ds) + + mapping = dict(graph.nodes(data="id")) + # Continuity is a (default) tracer representing the mass balance + substances.add("Continuity") + + dfs = [] + for substance in substances: + df = ug[f"ribasim_{substance}"].to_dataframe().reset_index() + df.rename( + columns={ + "ribasim_nNodes": "node_id", + "nTimesDlwq": "time", + f"ribasim_{substance}": "concentration", + }, + inplace=True, + ) + df["substance"] = substance + df.drop(columns=["ribasim_node_x", "ribasim_node_y"], inplace=True) + # Map the node_id (logical index) to the original node_id + # TODO Check if this is correct + df.node_id += 1 + df.node_id = df.node_id.map(mapping) + + dfs.append(df) + + df = pd.concat(dfs).reset_index(drop=True) + df.sort_values(["time", "node_id"], inplace=True) + + model.basin.concentration_external = df + df.to_feather(toml_path.parent / "results" / "basin_concentration_external.arrow") + + return model diff --git a/coupling/delwaq/reference/dimr_config.xml b/coupling/delwaq/reference/dimr_config.xml new file mode 100644 index 000000000..a4d3ede3a --- /dev/null +++ b/coupling/delwaq/reference/dimr_config.xml @@ -0,0 +1,18 @@ + + + + 1.1 + Deltares, Coupling team + 2016-01-20T07:56:32+01:00 + + + + + + + delwaq + . + + delwaq.inp + + diff --git a/coupling/delwaq/template/B5_bounddata.inc.j2 b/coupling/delwaq/template/B5_bounddata.inc.j2 new file mode 100644 index 000000000..c9fd273ea --- /dev/null +++ b/coupling/delwaq/template/B5_bounddata.inc.j2 @@ -0,0 +1,32 @@ +ITEM 'LevelBoundary' +CONCENTRATIONS 'Continuity' 'LevelBoundary' +DATA 1 1 + +ITEM 'Terminal' +CONCENTRATIONS 'Continuity' +DATA 1 + +ITEM 'FlowBoundary' +CONCENTRATIONS 'Continuity' 'FlowBoundary' +DATA 1 1 + +ITEM 'Drainage' +CONCENTRATIONS 'Continuity' 'Drainage' +DATA 1 1 + +ITEM 'Precipitation' +CONCENTRATIONS 'Continuity' 'Precipitation' +DATA 1 1 + +{% for boundary in boundaries -%} +ITEM '{{ boundary.name }}' +CONCENTRATIONS {{ boundary.substances|join(' ')}} +DATA {{ boundary.concentrations|join(' ')}} + +{% endfor -%} +{% for state in states -%} +ITEM '{{ state.name }}' +CONCENTRATIONS {{ state.substances|join(' ')}} +DATA {{ state.concentrations|join(' ')}} + +{% endfor -%} diff --git a/coupling/delwaq/template/delwaq.atr.j2 b/coupling/delwaq/template/delwaq.atr.j2 new file mode 100644 index 000000000..dd6a370b1 --- /dev/null +++ b/coupling/delwaq/template/delwaq.atr.j2 @@ -0,0 +1,16 @@ + ; DELWAQ_COMPLETE_ATTRIBUTES + 2 ; two blocks with input + 1 ; number of attributes, they are : + 1 ; '1' is active '0' is not + 1 ; data follows in this file + 1 ; all data is given without defaults + ; layer: 1 +{{ nsegments }}*1 + 1 ; number of attributes, they are : + 2 ; '1' has surface '3' has bottom + ; '0' has both '2' has none + 1 ; data follows in this file + 1 ; all data is given without defaults + ; layer: 1 +{{ nsegments }}*0 + 0 ; no time dependent attributes diff --git a/coupling/delwaq/template/delwaq.inp.j2 b/coupling/delwaq/template/delwaq.inp.j2 new file mode 100644 index 000000000..d18230a30 --- /dev/null +++ b/coupling/delwaq/template/delwaq.inp.j2 @@ -0,0 +1,182 @@ +1000 80 ';' +;DELWAQ_VERSION_4.910 ; Delwaq version number +;PRINT_OUTPUT_OPTION_9 ; Debug level + +; TEMPLATE FILE FOR WATER QUALITY CALCULATION +; First input block +'Water quality calculation' +' ' +' ' +'T0: {{startime.strftime("%Y.%m.%d %H:%M:%S")}} (scu= 1s)' + +; Hard coded Substances for mass balance check: +; number of active and inactive substances +{{substances|length+5}} 0 + ; active substances +1 'Continuity' +2 'Basin' +3 'LevelBoundary' +4 'FlowBoundary' +5 'Terminal' +{% for substance in substances -%} +{{5+loop.index}} '{{substance}}' +{% endfor -%} + ; passive substances + +#1; + +;############################################################################### +; Second input block +1 'DDHHMMSS' 'DDHHMMSS' ; system clock +; Integration options: +15.70 ; integration option, no balance keywords yet + +; Simulation start, stop and timestep: + {{ startime.strftime("%Y/%m/%d-%H:%M:%S") }} ; start time + {{ endtime.strftime("%Y/%m/%d-%H:%M:%S") }} ; stop time + 0 ; timestep constant +; dddhhmmss + {{ timestep }} ; timestep + 1 ; Monitoring areas in this file +; Todo: Monitoring areas +0 + 2 ; No monitoring cross areas +; Output timesteps. Equal to Ribasim timestep: +; output control (see DELWAQ-manual) +; yyyy/mm/dd-hh:mm:ss yyyy/mm/dd-hh:mm:ss dddhhmmss + {{ startime.strftime("%Y/%m/%d-%H:%M:%S") }} {{ endtime.strftime("%Y/%m/%d-%H:%M:%S") }} {{ timestep }} ; start, stop and step for balance output + {{ startime.strftime("%Y/%m/%d-%H:%M:%S") }} {{ endtime.strftime("%Y/%m/%d-%H:%M:%S") }} {{ timestep }} ; start, stop and step for map output + {{ startime.strftime("%Y/%m/%d-%H:%M:%S") }} {{ endtime.strftime("%Y/%m/%d-%H:%M:%S") }} {{ timestep }} ; start, stop and step for his output + + +#2; +;############################################################################### +; Third input block +; Ribasim Ugrid file: +UGRID 'ribasim.nc' ; Reference to the waqgeom file for UGRID NetCDF output + +; nr of segments +{{ nsegments }} ; nr of segments + + 2 ; Structure matrix not used + +INCLUDE 'ribasim.atr' ; From UI: attributes file + +; Volume file +-2 ; volumes will be interpolated from a binary file +'ribasim.vol' ; From UI: volumes-file + +#3; +;############################################################################### +; Fourth input block +; nr of exchanges in three directions. Only first is used, followed by two zeros. +{{ nexchanges }} 0 0 ; nr of exchanges + 0 ; Number of dispersion arrays (this is different when spatial dispersion is implemented) + 0 ; Number of velocity arrays + 1 ; Input format of the pointers. + +; Pointer file +0 ; pointers from binary file. +'ribasim.poi' ; From Ribasim + 1 ; Dispersions in this file + 1.0 1.0 1.0 ; Scale factors for 3 directions + +; Default dispersion: +1 0.0 1E-07 ; constant dispersion + +; Area file +-2 ; areas will be interpolated from a binary file +'ribasim.are' ; From Ribasim + +; Flow file +-2 ; flows from binary file +'ribasim.flo' ; From Ribasim + +0 ; Vary in space +; Length file +1 1 1 1 ; Lengths from binary file + +#4; +;############################################################################### +; Fifth input block, water quality calculation + +; Boundary list +;'NodeID' 'Comment field' 'Boundary name used for data grouping' +INCLUDE 'ribasim_bndlist.inc' ; From UI: Boundary segments + +0 ; No Tatcher-Harleman time lags +; Boundary data: +INCLUDE 'B5_bounddata.inc' ; From UI: Boundary data + + +#5; +;############################################################################### +; Sixth input block, Dry Waste Loads block + +0; Number of loads + +#6; +;############################################################################### +; Seventh input block + +CONSTANTS 'ONLY_ACTIVE' DATA 0 ; Only active processes + +;INCLUDE 'includes_deltashell/B7_processes.inc' ; From UI: Processes +;INCLUDE 'includes_deltashell/B7_constants.inc' ; From UI: Constants +;INCLUDE 'includes_deltashell/B7_functions.inc' ; From UI: Functions +;INCLUDE 'includes_deltashell/B7_parameters.inc' ; From UI: Parameters +;INCLUDE 'includes_deltashell/B7_dispersion.inc' ; FROM UI: Spatial dispersion +;INCLUDE 'includes_deltashell/B7_vdiffusion.inc' ; FROM UI: Vertical diffusion + +;INCLUDE 'includes_deltashell/B7_segfunctions.inc' ; FROM UI: SEG_FUNCTION blocks +;INCLUDE 'includes_deltashell/B7_numerical_options.inc' ; FROM UI: numerical options + +#7 +;############################################################################### +; Eighth input block + +;INCLUDE 'includes_deltashell/B8_initials.inc' ; From UI: Initials + +; Hard coded initials for mass balance check. +MASS/M2 ; The bed substances are specified in mass/m2 +INITIALS +'Continuity' +'Basin' +'LevelBoundary' +'FlowBoundary' +'Terminal' +{% for substance in substances -%} +'{{substance}}' +{% endfor -%} +DEFAULTS +1 +0 +0 +0 +0 +{% for substance in substances -%} +0 +{% endfor -%} +#8 +;############################################################################### +; Ninth input block + 1 ; Conditions follow in this file + 1 ; Default monitor-file + 0 ; No grid-file +; INCLUDE 'includes_deltashell/B9_Hisvar.inc' ; From UI: History-file +2 ; perform default output and extra parameters listed below +0 ; number of parameters listed + +; INCLUDE 'includes_deltashell/B9_Mapvar.inc' ; From UI: Map-file +2 ; perform default output and extra parameters listed below +1 ; number of parameters listed +'Volume' + ; Binary/Nefis and History/Map + 1 ; Switch on binary History file + 1 ; Switch on binary Map file + 1 ; Switch off Nefis History file + 1 ; Switch off Nefis Map file +#9 +;############################################################################### +; Tenth input block +#10 diff --git a/coupling/delwaq/test.py b/coupling/delwaq/test.py new file mode 100644 index 000000000..247c6b564 --- /dev/null +++ b/coupling/delwaq/test.py @@ -0,0 +1,22 @@ +from pathlib import Path + +from generate import generate +from parse import parse +from util import run_delwaq + +delwaq_dir = Path(__file__).parent + + +def test_offline_delwaq_coupling(): + repo_dir = delwaq_dir.parents[1] + toml_path = repo_dir / "generated_testmodels/basic/ribasim.toml" + + graph, substances = generate(toml_path) + run_delwaq() + model = parse(toml_path, graph, substances) + + df = model.basin.concentration_external.df + assert df is not None + assert df.shape[0] > 0 + assert df.node_id.nunique() == 4 + assert sorted(df.substance.unique()) == ["Cl", "Continuity", "Tracer"] diff --git a/coupling/delwaq/util.py b/coupling/delwaq/util.py new file mode 100644 index 000000000..906a3aebd --- /dev/null +++ b/coupling/delwaq/util.py @@ -0,0 +1,169 @@ +"""Utilities to write Delwaq (binary) input files.""" + +import os +import platform +import struct +import subprocess +from datetime import timedelta +from pathlib import Path + +import numpy as np +import pandas as pd +from ribasim.utils import MissingOptionalModule + +try: + import xugrid +except ImportError: + xugrid = MissingOptionalModule("xugrid") + + +def strfdelta(tdelta) -> str: + # dddhhmmss format + days = tdelta.days + hours, rem = divmod(tdelta.seconds, 3600) + minutes, seconds = divmod(rem, 60) + return f"{days:03d}{hours:02d}{minutes:02d}{seconds:02d}" + + +def write_pointer(fn: Path | str, data: pd.DataFrame) -> None: + """Write pointer file for Delwaq. + + The format is a matrix of int32 of edges + with 4 columns: from_node_id, to_node_id, 0, 0 + + This saves as column major order for Fortran compatibility. + + Data is a DataFrame with columns from_node_id, to_node_id. + """ + with open(fn, "wb") as f: + for a, b in data.to_numpy(): + f.write(struct.pack("<4i", a, b, 0, 0)) + + +def write_lengths(fn: Path | str, data: np.ndarray[np.float32]) -> None: + """Write lengths file for Delwaq. + + The format is an int defining time/edges (?) + Followed by a matrix of float32 of 2, n_edges + Defining the length of the half-edges. + + This saves as column major order for Fortran compatibility. + + Data is an array of float32. + """ + with open(fn, "wb") as f: + f.write(struct.pack(" None: + """Write volumes file for Delwaq. + + The format is an int defining the time + followed by the volume for each node + The order should be the same as the nodes in the mesh. + + This saves as column major order for Fortran compatibility. + + Data is a DataFrame with columns time, storage + """ + with open(fn, "wb") as f: + for time, group in data.groupby("time"): + f.write(struct.pack(" None: + """Write flows file for Delwaq. + + The format is an int defining the time + followed by the flow for each edge + The order should be the same as the nodes in the pointer. + + This saves as column major order for Fortran compatibility. + + Data is a DataFrame with columns time, flow + """ + with open(fn, "wb") as f: + for time, group in data.groupby("time"): + f.write(struct.pack(" xugrid.UgridDataset: + # TODO Deduplicate with ribasim.Model.to_xugrid + edge_df = pd.DataFrame(G.edges(), columns=["from_node_id", "to_node_id"]) + node_df = pd.DataFrame(G.nodes(), columns=["node_id"]) + node_df["x"] = [i[1] for i in G.nodes(data="x")] + node_df["y"] = [i[1] for i in G.nodes(data="y")] + node_df = node_df[node_df.node_id > 0] + edge_df = edge_df[ + edge_df.from_node_id.isin(node_df.node_id) + & edge_df.to_node_id.isin(node_df.node_id) + ] + + node_id = node_df.node_id.to_numpy() + edge_id = edge_df.index.to_numpy() + from_node_id = edge_df.from_node_id.to_numpy() + to_node_id = edge_df.to_node_id.to_numpy() + + # from node_id to the node_dim index + node_lookup = pd.Series( + index=node_id, + data=node_id.argsort().astype(np.int32), + name="node_index", + ) + + grid = xugrid.Ugrid1d( + node_x=node_df.x, + node_y=node_df.y, + fill_value=-1, + edge_node_connectivity=np.column_stack( + ( + node_lookup[from_node_id], + node_lookup[to_node_id], + ) + ), + name="ribasim", + ) + + edge_dim = grid.edge_dimension + node_dim = grid.node_dimension + + uds = xugrid.UgridDataset(None, grid) + uds = uds.assign_coords(node_id=(node_dim, node_id)) + uds = uds.assign_coords(edge_id=(edge_dim, edge_id)) + uds = uds.assign_coords(from_node_id=(edge_dim, from_node_id)) + uds = uds.assign_coords(to_node_id=(edge_dim, to_node_id)) + + return uds + + +def run_delwaq() -> None: + d3d_home = os.environ.get("D3D_HOME") + if d3d_home is None: + raise ValueError("D3D_HOME is not set.") + else: + d3d_home = Path(d3d_home) + binfolder = (d3d_home / "bin").absolute() + folder = Path(__file__).parent + inp_path = folder / "model" / "delwaq.inp" + system = platform.system() + if system == "Windows": + # run_delwaq.bat prepends working directory to the inp file + subprocess.run( + [binfolder / "run_delwaq.bat", "delwaq.inp"], + cwd=(folder / "model").absolute(), + ) + elif system == "Linux": + subprocess.run([binfolder / "run_delwaq.sh", inp_path.absolute()]) + else: + raise OSError(f"No support for running Delwaq automatically on {system}.") diff --git a/docs/.gitignore b/docs/.gitignore index 0c28493e0..c8f1e55fb 100644 --- a/docs/.gitignore +++ b/docs/.gitignore @@ -4,5 +4,4 @@ python/reference/ python/data/ *.html -/Manifest.toml objects.json diff --git a/docs/_quarto.yml b/docs/_quarto.yml index e3cd0e3e5..6339555ed 100644 --- a/docs/_quarto.yml +++ b/docs/_quarto.yml @@ -32,7 +32,7 @@ website: - core/equations.qmd - core/allocation.qmd - core/numerics.qmd - - build/index.md + - core/coupling.qmd - title: "Python tooling" contents: - python/index.qmd diff --git a/docs/contribute/core.qmd b/docs/contribute/core.qmd index ef4e52fc3..de9e7f635 100644 --- a/docs/contribute/core.qmd +++ b/docs/contribute/core.qmd @@ -37,7 +37,7 @@ You can let it start automatically by following these [instructions](https://tim There is a section on editors and IDEs for Julia on , scroll down to see it. We use and recommend Microsoft's free editor [Visual Studio Code](https://code.visualstudio.com/). When combined with the [Julia extension](https://www.julia-vscode.org/) it provides a powerful and interactive development experience. -Make sure to have the correct environment when opening your IDE by running `open-vscode.bat`, or opening a `pixi --environment=dev shell` and then calling the command to open the editor of your choice. +Make sure to have the correct environment when opening your IDE by running `open-vscode.bat`, or opening a `pixi shell` and then calling the command to open the editor of your choice. # Developing on Ribasim @@ -75,11 +75,6 @@ The first run will be slow. ## Render documentation Example models are created and simulated as part of the rendering of the documentation. -The Julia API reference is created using Documenter.jl by running this command: - -```bash -pixi run build-julia-docs -``` In order to preview documentation you can run the following command from the `docs/` folder. Afterwards, a browser tab will open with the rendered documentation, updating it as you diff --git a/docs/contribute/index.qmd b/docs/contribute/index.qmd index c35736711..2f787dee9 100644 --- a/docs/contribute/index.qmd +++ b/docs/contribute/index.qmd @@ -35,7 +35,7 @@ First, set up pixi as described on their getting started [page](https://prefix.d Then set up the environment by running the following commands: ```sh -pixi run --environment=dev install +pixi run install ``` This will automatically install all required packages for development. diff --git a/docs/contribute/qgis.qmd b/docs/contribute/qgis.qmd index afaae6eef..062214d42 100644 --- a/docs/contribute/qgis.qmd +++ b/docs/contribute/qgis.qmd @@ -5,7 +5,7 @@ title: "QGIS plugin development" # Set up the developer environment After you have installed the environment as described [here](index.qmd) you must still activate the QGIS plugins. -The simplest way to do this is by running `pixi run --environment=dev install-qgis-plugins`. +The simplest way to do this is by running `pixi run install-qgis-plugins`. It grabs the latest version of the iMOD QGIS plugin and it makes a symlink to the ribasim_qgis folder so that QGIS can find it. It also installs plugins that make it possible to reload and debug your plugin while QGIS is open. @@ -36,7 +36,7 @@ Then simply call `pixi run test-ribasim-qgis`. # Debugging -After installing the plugins via `pixi run --environment=dev install-qgis-plugins`. +After installing the plugins via `pixi run install-qgis-plugins`. Extra debugging tools are also installed in QGIS that is installed within your pixi environment. After you have started `pixi run qgis`, you can make alterations to the Python code and use the [Plugin Reloader](https://github.com/borysiasty/plugin_reloader) to reload the plugin without restarting QGIS. diff --git a/docs/core/index.qmd b/docs/core/index.qmd index 86df98110..3fed095e8 100644 --- a/docs/core/index.qmd +++ b/docs/core/index.qmd @@ -11,7 +11,7 @@ The theory is described on the [equations](equations.qmd) page, and more in-dept The core is implemented in the [Julia programming language](https://julialang.org/), and can be found in the [Ribasim repository](https://github.com/Deltares/Ribasim) under the `core/` folder. For developers we also advise to read the -[developer documentation](../contribute/core.qmd). +[developer documentation](../contribute/core.qmd). Information on coupling can be found [here](coupling.qmd). An overview of all components is given on the [home page](../index.qmd#sec-components) @@ -119,8 +119,3 @@ end allocation_subNetwork->>user_demand: allocated user_demand->>basin: abstracted ``` - -# Coupling - -Ribasim can also be coupled to other kernels with the help of iMOD Coupler. -The corresponding documentation can be found within the [iMOD Suite Documentation](https://deltares.github.io/iMOD-Documentation/coupler.html). diff --git a/docs/core/usage.qmd b/docs/core/usage.qmd index a54d48a6d..df5fa605c 100644 --- a/docs/core/usage.qmd +++ b/docs/core/usage.qmd @@ -356,6 +356,38 @@ Water levels beyond the last `basin_level` are linearly extrapolated. Note that the interpolation to subgrid water level is not constrained by any water balance within Ribasim. Generally, to create physically meaningful subgrid water levels, the subgrid table must be parametrized properly such that the spatially integrated water volume of the subgrid elements agrees with the total storage volume of the basin. +## Basin / concentration {#sec-basin-conc} +This table defines the concentration(s) of (a) substance(s) for the inflow boundaries of a Basin node. + +column | type | unit | restriction +------------- | -------- | --------------- | ----------- +node_id | Int32 | - | sorted +time | DateTime | - | sorted per node_id +substance | String | | can correspond to known Delwaq substances +drainage | Float64 | $g m^{-3}$ | (optional) +precipitation | Float64 | $g m^{-3}$ | (optional) + +## Basin / concentrationstate {#sec-basin-conc-state} +This table defines the concentration(s) of (a) substance(s) in the basin at the start of the simulation. + +column | type | unit | restriction +-------------- | -------- | ------------ | ----------- +node_id | Int32 | - | sorted +time | DateTime | - | sorted per node_id +substance | String | - | can correspond to known Delwaq substances +concentration | Float64 | $g m^{-3}$ | + +## Basin / concentrationexternal +This table is used for (external) concentrations, that can be used for Control lookups. + +column | type | unit | restriction +-------------- | -------- | ------------ | ----------- +node_id | Int32 | - | sorted +time | DateTime | - | sorted per node_id +substance | String | - | can correspond to known Delwaq substances +concentration | Float64 | $g m^{-3}$ | + + # FractionalFlow {#sec-fractional-flow} Lets a fraction (in [0,1]) of the incoming flow trough. @@ -368,24 +400,29 @@ fraction | Float64 | - | in the interval [0,1] # TabulatedRatingCurve {#sec-tabulated-rating-curve} -This table is similar in structure to the Basin profile. The TabulatedRatingCurve gives a -relation between the storage of a connected Basin (via the outlet level) and its outflow. +This table is similar in structure to the Basin profile. +The TabulatedRatingCurve gives a relation between the level of a directly upstream Basin or LevelBoundary and its outflow. column | type | unit | restriction ------------- | ------- | ------------ | ----------- node_id | Int32 | - | sorted control_state | String | - | (optional) sorted per node_id active | Bool | - | (optional, default true) -level | Float64 | $m$ | sorted per control_state -flow_rate | Float64 | $m^3 s^{-1}$ | non-negative +level | Float64 | $m$ | sorted per control_state, unique +flow_rate | Float64 | $m^3 s^{-1}$ | start at 0, increasing + +Thus a single rating curve can be given by the following table: node_id | flow_rate | level ------- |----------- |------- - 2 | 0.0 | -0.105 - 2 | 0.0 | 0.095 - 2 | 0.00942702 | 0.295 - 2 | 0.942702 | 20.095 - 3 | 0.0 | 2.129 + 2 | 0.0 | -0.10 + 2 | 0.0001 | 0.09 + 2 | 0.01 | 0.29 + 2 | 0.9 | 20.09 + +Below the lowest given level of -0.10, the flow rate is kept at 0. +Between given levels the flow rate is interpolated linearly. +Above the maximum given level of 20.09, the flow rate keeps increases linearly according to the slope of the last segment. ## TabulatedRatingCurve / time @@ -557,6 +594,16 @@ node_id | Int32 | - | sorted time | DateTime | - | sorted per node_id level | Float64 | $m$ | - +## LevelBoundary / concentration {#sec-level-boundary-conc} +This table defines the concentration(s) of (a) substance(s) for the flow from the LevelBoundary. + +column | type | unit | restriction +-------------- | -------- | ------------ | ----------- +node_id | Int32 | - | sorted +time | DateTime | - | sorted per node_id +substance | String | - | can correspond to known Delwaq substances +concentration | Float64 | $g m^{-3}$ | + # FlowBoundary {#sec-flow-boundary} Pump water to a destination node. @@ -588,6 +635,16 @@ node_id | Int32 | - | sorted time | DateTime | - | sorted per node_id flow_rate | Float64 | $m^3 s^{-1}$ | non-negative +## FlowBoundary / concentration {#sec-flow-boundary-conc} +This table defines the concentration(s) of (a) substance(s) for the flow from the FlowBoundary. + +column | type | unit | restriction +-------------- | -------- | ------------ | ----------- +node_id | Int32 | - | sorted +time | DateTime | - | sorted per node_id +substance | String | - | can correspond to known Delwaq substances +concentration | Float64 | $g m^{-3}$ | + # LinearResistance {#sec-linear-resistance} Flow proportional to the level difference between the connected basins. diff --git a/docs/make.jl b/docs/make.jl deleted file mode 100644 index 07942b191..000000000 --- a/docs/make.jl +++ /dev/null @@ -1,17 +0,0 @@ -cd(@__DIR__) - -using Documenter, Ribasim -using DocumenterMarkdown - -DocMeta.setdocmeta!(Ribasim, :DocTestSetup, :(using Ribasim); recursive = true) - -makedocs(; - modules = [Ribasim, Ribasim.config], - format = Markdown(), - repo = "https://github.com/Deltares/Ribasim.jl/blob/{commit}{path}#L{line}", - sitename = "Ribasim.jl", - authors = "Deltares and contributors", - doctest = false, # we doctest as part of normal CI -) - -# TODO Make fully compatible with Quarto, like LaTeX and references diff --git a/docs/src/index.md b/docs/src/index.md deleted file mode 100644 index dc071f5c4..000000000 --- a/docs/src/index.md +++ /dev/null @@ -1,45 +0,0 @@ -# API Reference -*This is the private internal documentation of the Ribasim API.* - -```@contents -``` - -## Modules - -```@autodocs -Modules = [Ribasim, Ribasim.config] -Order = [:module] -``` - -## Types - -```@autodocs -Modules = [Ribasim, Ribasim.config] -Order = [:type] -``` - -## Functions - -```@autodocs -Modules = [Ribasim, Ribasim.config] -Order = [:function] -``` - -## Constants - -```@autodocs -Modules = [Ribasim, Ribasim.config] -Order = [:constant] -``` - -## Macros - -```@autodocs -Modules = [Ribasim, Ribasim.config] -Order = [:macro] -``` - -## Index - -```@index -``` diff --git a/pixi.lock b/pixi.lock index 18e8a36e1..ba4fa19dd 100644 --- a/pixi.lock +++ b/pixi.lock @@ -11,27 +11,28 @@ environments: - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.6.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/attrs-23.2.0-pyh71513ae_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.16-haed3651_8.conda - 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"install-ribasim-python", - "install-ribasim-api", - "install-ribasim-testmodels", -] } # Tests test-ribasim-python = "pytest --numprocesses=4 python/ribasim/tests" test-ribasim-python-cov = "pytest --numprocesses=4 --cov=ribasim --cov-report=xml python/ribasim/tests" @@ -29,14 +20,9 @@ test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=r [feature.dev.tasks] # Installation -install-julia = "juliaup add 1.10.0 && juliaup default 1.10.0" +install-julia = "juliaup add 1.10.3 && juliaup default 1.10.3" install-pre-commit = "pre-commit install" -install-ci = { depends_on = [ - "install-python", - "install-julia", - "update-registry-julia", - -] } +install-ci = { depends_on = ["install-julia", "update-registry-julia"] } install = { depends_on = [ "install-ci", "install-qgis-plugins", @@ -59,7 +45,7 @@ build-julia-docs = { cmd = "julia --project docs/make.jl", depends_on = [ ], outputs = [ "docs/build", ] } -quartodoc-build = { cmd = "quartodoc build && rm objects.json", cwd="docs", inputs = [ +quartodoc-build = { cmd = "quartodoc build && rm objects.json", cwd = "docs", inputs = [ "docs/_quarto.yml", "python/ribasim", ], outputs = [ @@ -108,6 +94,7 @@ generate-testmodels = { cmd = "python utils/generate-testmodels.py", inputs = [ "generated_testmodels", ] } tests = { depends_on = ["lint", "test-ribasim-python", "test-ribasim-core"] } +delwaq = { cmd = "pytest coupling/delwaq/test.py" } # Codegen codegen = { cmd = "julia --project utils/gen_python.jl && ruff format python/ribasim/ribasim/schemas.py", depends_on = [ "initialize-julia", @@ -163,6 +150,7 @@ github-release = "python utils/github-release.py" [dependencies] geopandas = "*" hatchling = "*" +jinja2 = "*" matplotlib = "*" netCDF4 = "*" numpy = "*" @@ -183,7 +171,12 @@ tomli-w = "*" xmipy = "*" xugrid = "*" xarray = "*" +networkx = ">=3.3" +[pypi-dependencies] +ribasim = { path = "python/ribasim", editable = true } +ribasim_api = { path = "python/ribasim_api", editable = true } +ribasim_testmodels = { path = "python/ribasim_testmodels", editable = true } [feature.dev.dependencies] build = "*" diff --git a/python/ribasim/ribasim/__init__.py b/python/ribasim/ribasim/__init__.py index 083d10b68..6f0ec385a 100644 --- a/python/ribasim/ribasim/__init__.py +++ b/python/ribasim/ribasim/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.7.0" +__version__ = "2024.8.0" from ribasim.config import Allocation, Logging, Node, Solver diff --git a/python/ribasim/ribasim/config.py b/python/ribasim/ribasim/config.py index 30408fe05..9572db9c2 100644 --- a/python/ribasim/ribasim/config.py +++ b/python/ribasim/ribasim/config.py @@ -7,7 +7,7 @@ import pandas as pd import pydantic from geopandas import GeoDataFrame -from pydantic import ConfigDict, Field, model_validator +from pydantic import ConfigDict, Field, NonNegativeInt, model_validator from shapely.geometry import Point from ribasim.geometry import BasinAreaSchema, NodeTable @@ -16,6 +16,9 @@ # These schemas are autogenerated from ribasim.schemas import ( + BasinConcentrationExternalSchema, + BasinConcentrationSchema, + BasinConcentrationStateSchema, BasinProfileSchema, BasinStateSchema, BasinStaticSchema, @@ -24,11 +27,13 @@ DiscreteControlConditionSchema, DiscreteControlLogicSchema, DiscreteControlVariableSchema, + FlowBoundaryConcentrationSchema, FlowBoundaryStaticSchema, FlowBoundaryTimeSchema, FlowDemandStaticSchema, FlowDemandTimeSchema, FractionalFlowStaticSchema, + LevelBoundaryConcentrationSchema, LevelBoundaryStaticSchema, LevelBoundaryTimeSchema, LevelDemandStaticSchema, @@ -87,7 +92,7 @@ class Logging(ChildModel): class Node(pydantic.BaseModel): - node_id: int + node_id: NonNegativeInt geometry: Point name: str = "" subnetwork_id: int | None = None @@ -189,6 +194,10 @@ class LevelBoundary(MultiNodeModel): default_factory=TableModel[LevelBoundaryTimeSchema], json_schema_extra={"sort_keys": ["node_id", "time"]}, ) + concentration: TableModel[LevelBoundaryConcentrationSchema] = Field( + default_factory=TableModel[LevelBoundaryConcentrationSchema], + json_schema_extra={"sort_keys": ["node_id", "substance", "time"]}, + ) class Pump(MultiNodeModel): @@ -240,6 +249,10 @@ class FlowBoundary(MultiNodeModel): default_factory=TableModel[FlowBoundaryTimeSchema], json_schema_extra={"sort_keys": ["node_id", "time"]}, ) + concentration: TableModel[FlowBoundaryConcentrationSchema] = Field( + default_factory=TableModel[FlowBoundaryConcentrationSchema], + json_schema_extra={"sort_keys": ["node_id", "substance", "time"]}, + ) class FlowDemand(MultiNodeModel): @@ -278,6 +291,18 @@ class Basin(MultiNodeModel): default_factory=SpatialTableModel[BasinAreaSchema], json_schema_extra={"sort_keys": ["node_id"]}, ) + concentration: TableModel[BasinConcentrationSchema] = Field( + default_factory=TableModel[BasinConcentrationSchema], + json_schema_extra={"sort_keys": ["node_id", "substance", "time"]}, + ) + concentration_external: TableModel[BasinConcentrationExternalSchema] = Field( + default_factory=TableModel[BasinConcentrationExternalSchema], + json_schema_extra={"sort_keys": ["node_id", "substance", "time"]}, + ) + concentration_state: TableModel[BasinConcentrationStateSchema] = Field( + default_factory=TableModel[BasinConcentrationStateSchema], + json_schema_extra={"sort_keys": ["node_id", "substance"]}, + ) class ManningResistance(MultiNodeModel): diff --git a/python/ribasim/ribasim/geometry/node.py b/python/ribasim/ribasim/geometry/node.py index d77a40f99..990dd394c 100644 --- a/python/ribasim/ribasim/geometry/node.py +++ b/python/ribasim/ribasim/geometry/node.py @@ -16,7 +16,7 @@ class NodeSchema(pa.SchemaModel): - node_id: Series[Int32] + node_id: Series[Int32] = pa.Field(ge=0) name: Series[str] = pa.Field(default="") node_type: Series[str] = pa.Field(default="") subnetwork_id: Series[pd.Int32Dtype] = pa.Field( diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 2b4f195ef..c7b1454ef 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -170,6 +170,7 @@ def _save(self, directory: DirectoryPath, input_dir: DirectoryPath): self.edge._save(directory, input_dir) node = self.node_table() + assert node.df is not None # Temporarily require unique node_id for #1262 # and copy them to the fid for #1306. if not node.df["node_id"].is_unique: @@ -203,10 +204,11 @@ def _apply_crs_function(self, function_name: str, crs: str) -> None: def node_table(self) -> NodeTable: """Compute the full NodeTable from all node types.""" - df_chunks = [node.node.df.set_crs(self.crs) for node in self._nodes()] + df_chunks = [node.node.df.set_crs(self.crs) for node in self._nodes()] # type:ignore df = pd.concat(df_chunks, ignore_index=True) node_table = NodeTable(df=df) node_table.sort() + assert node_table.df is not None node_table.df.index.name = "fid" return node_table @@ -229,23 +231,6 @@ def _children(self): if isinstance(getattr(self, k), ChildModel) } - def validate_model_node_field_ids(self): - raise NotImplementedError() - - def validate_model_node_ids(self): - raise NotImplementedError() - - def validate_model(self): - """Validate the model. - - Checks: - - Whether the node IDs of the node_type fields are valid - - Whether the node IDs in the node field correspond to the node IDs on the node type fields - """ - - self.validate_model_node_field_ids() - self.validate_model_node_ids() - @classmethod def read(cls, filepath: str | PathLike[str]) -> "Model": """Read model from TOML file.""" @@ -403,6 +388,7 @@ def to_xugrid(self, add_results: bool = True): if the optional dependency `xugrid` isn't installed. """ node_df = self.node_table().df + assert node_df is not None # This will need to be adopted for locally unique node IDs, # otherwise the `node_lookup` with `argsort` is not correct. @@ -410,6 +396,7 @@ def to_xugrid(self, add_results: bool = True): raise ValueError("node_id must be unique") node_df.sort_values("node_id", inplace=True) + assert self.edge.df is not None edge_df = self.edge.df.copy() # We assume only the flow network is of interest. edge_df = edge_df[edge_df.edge_type == "flow"] diff --git a/python/ribasim/ribasim/nodes/basin.py b/python/ribasim/ribasim/nodes/basin.py index 0e529cdc1..f155f848b 100644 --- a/python/ribasim/ribasim/nodes/basin.py +++ b/python/ribasim/ribasim/nodes/basin.py @@ -4,6 +4,9 @@ from ribasim.geometry.area import BasinAreaSchema from ribasim.input_base import TableModel from ribasim.schemas import ( + BasinConcentrationExternalSchema, + BasinConcentrationSchema, + BasinConcentrationStateSchema, BasinProfileSchema, BasinStateSchema, BasinStaticSchema, @@ -11,7 +14,15 @@ BasinTimeSchema, ) -__all__ = ["Static", "Time", "State", "Profile", "Subgrid", "Area"] +__all__ = [ + "Static", + "Time", + "State", + "Profile", + "Subgrid", + "Area", + "Concentration", +] class Static(TableModel[BasinStaticSchema]): @@ -42,3 +53,18 @@ def __init__(self, **kwargs): class Area(TableModel[BasinAreaSchema]): def __init__(self, **kwargs): super().__init__(df=GeoDataFrame(dict(**kwargs))) + + +class Concentration(TableModel[BasinConcentrationSchema]): + def __init__(self, **kwargs): + super().__init__(df=GeoDataFrame(dict(**kwargs))) + + +class ConcentrationExternal(TableModel[BasinConcentrationExternalSchema]): + def __init__(self, **kwargs): + super().__init__(df=GeoDataFrame(dict(**kwargs))) + + +class ConcentrationState(TableModel[BasinConcentrationStateSchema]): + def __init__(self, **kwargs): + super().__init__(df=GeoDataFrame(dict(**kwargs))) diff --git a/python/ribasim/ribasim/nodes/flow_boundary.py b/python/ribasim/ribasim/nodes/flow_boundary.py index 12ec8c028..096652f6f 100644 --- a/python/ribasim/ribasim/nodes/flow_boundary.py +++ b/python/ribasim/ribasim/nodes/flow_boundary.py @@ -2,11 +2,12 @@ from ribasim.input_base import TableModel from ribasim.schemas import ( + FlowBoundaryConcentrationSchema, FlowBoundaryStaticSchema, FlowBoundaryTimeSchema, ) -__all__ = ["Static", "Time"] +__all__ = ["Static", "Time", "Concentration"] class Static(TableModel[FlowBoundaryStaticSchema]): @@ -17,3 +18,8 @@ def __init__(self, **kwargs): class Time(TableModel[FlowBoundaryTimeSchema]): def __init__(self, **kwargs): super().__init__(df=DataFrame(dict(**kwargs))) + + +class Concentration(TableModel[FlowBoundaryConcentrationSchema]): + def __init__(self, **kwargs): + super().__init__(df=DataFrame(dict(**kwargs))) diff --git a/python/ribasim/ribasim/nodes/level_boundary.py b/python/ribasim/ribasim/nodes/level_boundary.py index da23c3c61..1fb9d5d81 100644 --- a/python/ribasim/ribasim/nodes/level_boundary.py +++ b/python/ribasim/ribasim/nodes/level_boundary.py @@ -2,11 +2,12 @@ from ribasim.input_base import TableModel from ribasim.schemas import ( + LevelBoundaryConcentrationSchema, LevelBoundaryStaticSchema, LevelBoundaryTimeSchema, ) -__all__ = ["Static", "Time"] +__all__ = ["Static", "Time", "Concentration"] class Static(TableModel[LevelBoundaryStaticSchema]): @@ -17,3 +18,8 @@ def __init__(self, **kwargs): class Time(TableModel[LevelBoundaryTimeSchema]): def __init__(self, **kwargs): super().__init__(df=DataFrame(dict(**kwargs))) + + +class Concentration(TableModel[LevelBoundaryConcentrationSchema]): + def __init__(self, **kwargs): + super().__init__(df=DataFrame(dict(**kwargs))) diff --git a/python/ribasim/ribasim/schemas.py b/python/ribasim/ribasim/schemas.py index 40f0e0a38..3686b2398 100644 --- a/python/ribasim/ribasim/schemas.py +++ b/python/ribasim/ribasim/schemas.py @@ -11,6 +11,27 @@ class Config: coerce = True +class BasinConcentrationExternalSchema(_BaseSchema): + node_id: Series[Int32] = pa.Field(nullable=False, default=0) + time: Series[Timestamp] = pa.Field(nullable=False) + substance: Series[str] = pa.Field(nullable=False) + concentration: Series[float] = pa.Field(nullable=True) + + +class BasinConcentrationStateSchema(_BaseSchema): + node_id: Series[Int32] = pa.Field(nullable=False, default=0) + substance: Series[str] = pa.Field(nullable=False) + concentration: Series[float] = pa.Field(nullable=True) + + +class BasinConcentrationSchema(_BaseSchema): + node_id: Series[Int32] = pa.Field(nullable=False, default=0) + time: Series[Timestamp] = pa.Field(nullable=False) + substance: Series[str] = pa.Field(nullable=False) + drainage: Series[float] = pa.Field(nullable=True) + precipitation: Series[float] = pa.Field(nullable=True) + + class BasinProfileSchema(_BaseSchema): node_id: Series[Int32] = pa.Field(nullable=False, default=0) area: Series[float] = pa.Field(nullable=False) @@ -70,6 +91,13 @@ class DiscreteControlVariableSchema(_BaseSchema): look_ahead: Series[float] = pa.Field(nullable=True) +class FlowBoundaryConcentrationSchema(_BaseSchema): + node_id: Series[Int32] = pa.Field(nullable=False, default=0) + time: Series[Timestamp] = pa.Field(nullable=False) + substance: Series[str] = pa.Field(nullable=False) + concentration: Series[float] = pa.Field(nullable=False) + + class FlowBoundaryStaticSchema(_BaseSchema): node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) @@ -101,6 +129,13 @@ class FractionalFlowStaticSchema(_BaseSchema): control_state: Series[str] = pa.Field(nullable=True) +class LevelBoundaryConcentrationSchema(_BaseSchema): + node_id: Series[Int32] = pa.Field(nullable=False, default=0) + time: Series[Timestamp] = pa.Field(nullable=False) + substance: Series[str] = pa.Field(nullable=False) + concentration: Series[float] = pa.Field(nullable=False) + + class LevelBoundaryStaticSchema(_BaseSchema): node_id: Series[Int32] = pa.Field(nullable=False, default=0) active: Series[pa.BOOL] = pa.Field(nullable=True) diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index 3e2ed89d6..c64ba479a 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -7,6 +7,7 @@ import xugrid from pydantic import ValidationError from pyproj import CRS +from ribasim import Node from ribasim.config import Solver from ribasim.geometry.edge import NodeData from ribasim.input_base import esc_id @@ -65,24 +66,12 @@ def test_exclude_unset(basic): assert d["solver"]["saveat"] == 86400.0 -@pytest.mark.xfail(reason="Needs implementation") -def test_invalid_node_id(basic): - model = basic - - # Add entry with invalid node ID - df = model.pump.static.df._append( - {"flow_rate": 1, "node_id": -1, "active": True}, - ignore_index=True, - ) - # Currently can't handle mixed NaN and None in a DataFrame - df = df.where(pd.notna(df), None) - model.pump.static.df = df - +def test_invalid_node_id(): with pytest.raises( ValueError, - match=re.escape("Node IDs must be non-negative integers, got [-1]."), + match=r".* Input should be greater than or equal to 0 .*", ): - model.validate_model_node_field_ids() + Node(-1, Point(7.0, 7.0)) @pytest.mark.xfail(reason="Should be reimplemented by the .add() API.") diff --git a/python/ribasim_api/ribasim_api/__init__.py b/python/ribasim_api/ribasim_api/__init__.py index 7b7f04fa8..8500b8953 100644 --- a/python/ribasim_api/ribasim_api/__init__.py +++ b/python/ribasim_api/ribasim_api/__init__.py @@ -1,4 +1,4 @@ -__version__ = "2024.7.0" +__version__ = "2024.8.0" from ribasim_api.ribasim_api import RibasimApi diff --git a/python/ribasim_testmodels/ribasim_testmodels/__init__.py b/python/ribasim_testmodels/ribasim_testmodels/__init__.py index f1a356a5f..1a0910f78 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/__init__.py +++ b/python/ribasim_testmodels/ribasim_testmodels/__init__.py @@ -49,6 +49,7 @@ invalid_edge_types_model, invalid_fractional_flow_model, invalid_qh_model, + invalid_unstable_model, ) from ribasim_testmodels.pid_control import ( discrete_control_of_pid_control_model, @@ -76,6 +77,7 @@ "invalid_edge_types_model", "invalid_fractional_flow_model", "invalid_qh_model", + "invalid_unstable_model", "leaky_bucket_model", "level_boundary_condition_model", "level_demand_model", diff --git a/python/ribasim_testmodels/ribasim_testmodels/basic.py b/python/ribasim_testmodels/ribasim_testmodels/basic.py index 3fe92ebf8..48f857199 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/basic.py +++ b/python/ribasim_testmodels/ribasim_testmodels/basic.py @@ -1,3 +1,4 @@ +from collections.abc import Sequence from pathlib import Path from typing import Any @@ -37,6 +38,16 @@ def basic_model() -> ribasim.Model: potential_evaporation=[0.001 / 86400], precipitation=[0.002 / 86400] ), basin.State(level=[0.04471158417652035]), + basin.Concentration( + time="2020-01-01 00:00:00", + substance=["Cl"], + drainage=[0.0], + precipitation=[0.0], + ), + basin.ConcentrationState(substance=["Cl"], concentration=[0.0]), + basin.ConcentrationExternal( + time="2020-01-01 00:00:00", substance=["Cl"], concentration=[0.0] + ), ] node_ids = [1, 3, 6, 9] node_geometries = [ @@ -107,16 +118,33 @@ def basic_model() -> ribasim.Model: model.pump.add(Node(7, Point(4.0, 1.0)), [pump.Static(flow_rate=[0.5 / 3600])]) # Setup flow boundary - flow_boundary_data = [flow_boundary.Static(flow_rate=[1e-4])] + flow_boundary_data: Sequence[TableModel[Any]] = [ + flow_boundary.Static(flow_rate=[1e-4]), + flow_boundary.Concentration( + time="2020-01-01 00:00:00", substance=["Tracer"], concentration=[1.0] + ), + ] model.flow_boundary.add(Node(15, Point(3.0, 3.0)), flow_boundary_data) model.flow_boundary.add(Node(16, Point(0.0, 1.0)), flow_boundary_data) # Setup level boundary model.level_boundary.add( - Node(11, Point(2.0, 2.0)), [level_boundary.Static(level=[1.0])] + Node(11, Point(2.0, 2.0)), + [ + level_boundary.Static(level=[1.0]), + level_boundary.Concentration( + time="2020-01-01 00:00:00", substance=["Cl"], concentration=[34.0] + ), + ], ) model.level_boundary.add( - Node(17, Point(6.0, 1.0)), [level_boundary.Static(level=[1.5])] + Node(17, Point(6.0, 1.0)), + [ + level_boundary.Static(level=[1.5]), + level_boundary.Concentration( + time="2020-01-01 00:00:00", substance=["Cl"], concentration=[34.0] + ), + ], ) # Setup terminal @@ -340,9 +368,9 @@ def outlet_model(): [ level_boundary.Time( time=[ - "2020-01-01", - "2020-06-01", - "2021-01-01", + "2020-01-01 00:00:00", + "2020-06-01 00:00:00", + "2021-01-01 00:00:00", ], level=[1.0, 3.0, 3.0], ) diff --git a/python/ribasim_testmodels/ribasim_testmodels/equations.py b/python/ribasim_testmodels/ribasim_testmodels/equations.py index 9ffe4c715..5da27b705 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/equations.py +++ b/python/ribasim_testmodels/ribasim_testmodels/equations.py @@ -67,7 +67,7 @@ def rating_curve_model() -> Model: ) level_min = 1.0 - level = np.linspace(0, 12, 100) + level = np.linspace(1, 12, 100) flow_rate = np.square(level - level_min) / (60 * 60 * 24) model.tabulated_rating_curve.add( Node(2, Point(1, 0)), diff --git a/python/ribasim_testmodels/ribasim_testmodels/invalid.py b/python/ribasim_testmodels/ribasim_testmodels/invalid.py index 87ea383d0..5c7a7aced 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/invalid.py +++ b/python/ribasim_testmodels/ribasim_testmodels/invalid.py @@ -1,7 +1,6 @@ from typing import Any -import pandas as pd -from ribasim.config import Node +from ribasim.config import Node, Solver from ribasim.input_base import TableModel from ribasim.model import Model from ribasim.nodes import ( @@ -16,6 +15,12 @@ def invalid_qh_model() -> Model: + """ + Invalid TabulatedRatingCurve Q(h) table: + - levels must be unique + - flow_rate must start at 0 + - flow_rate must not be decreasing + """ model = Model( starttime="2020-01-01", endtime="2020-12-01", @@ -24,29 +29,7 @@ def invalid_qh_model() -> Model: model.tabulated_rating_curve.add( Node(1, Point(0, 0)), - # Invalid: levels must not be repeated - [tabulated_rating_curve.Static(level=[0, 0], flow_rate=[1, 2])], - ) - model.tabulated_rating_curve.add( - Node(2, Point(0, 1)), - [ - tabulated_rating_curve.Time( - time=[ - pd.Timestamp("2020-01-01"), - pd.Timestamp("2020-01-01"), - ], - # Invalid: levels must not be repeated - level=[0, 0], - flow_rate=[1, 2], - ) - ], - ) - model.basin.add( - Node(3, Point(0, 2)), - [ - basin.State(level=[1.4112729908597084]), - basin.Profile(area=[0.01, 1], level=[0, 1]), - ], + [tabulated_rating_curve.Static(level=[0, 0, 1], flow_rate=[1, 2, 1.5])], ) return model @@ -112,6 +95,10 @@ def invalid_fractional_flow_model() -> Model: model.basin[2], model.fractional_flow[8], ) + model.edge.add( + model.fractional_flow[8], + model.terminal[5], + ) return model @@ -219,3 +206,29 @@ def invalid_edge_types_model() -> Model: model.edge.df["edge_type"] = ["foo", "bar"] return model + + +def invalid_unstable_model() -> Model: + """Model with several extremely quickly emptying basins.""" + + model = Model( + starttime="2020-01-01", + endtime="2021-01-01", + crs="EPSG:28992", + solver=Solver(dtmin=60.0), + ) + id_shift = 10 + for i in range(6): + model.basin.add( + Node(1 + id_shift * i, Point(i, 0)), + [basin.Profile(area=1000.0, level=[0.0, 1.0]), basin.State(level=[1.0])], + ) + flow_rate = 1.0 if (i % 2 == 0) else 1e10 + model.pump.add( + Node(2 + id_shift * i, Point(i, 1)), [pump.Static(flow_rate=[flow_rate])] + ) + model.terminal.add(Node(3 + id_shift * i, Point(i, 2))) + + model.edge.add(model.basin[1 + id_shift * i], model.pump[2 + id_shift * i]) + model.edge.add(model.pump[2 + id_shift * i], model.terminal[3 + id_shift * i]) + return model diff --git a/ribasim_qgis/metadata.txt b/ribasim_qgis/metadata.txt index 1478f2aad..550f1fb2e 100644 --- a/ribasim_qgis/metadata.txt +++ b/ribasim_qgis/metadata.txt @@ -4,10 +4,10 @@ # This file should be included when you package your plugin.# Mandatory items: [general] -name=Ribasim-QGIS +name=Ribasim qgisMinimumVersion=3.0 description=QGIS plugin to setup Ribasim models -version=2024.7.0 +version=2024.8.0 author=Deltares and contributors email=ribasim.info@deltares.nl diff --git a/utils/testmodelrun.jl b/utils/testmodelrun.jl index 6cefde49e..4d0aacb69 100644 --- a/utils/testmodelrun.jl +++ b/utils/testmodelrun.jl @@ -2,8 +2,16 @@ import Ribasim include("utils.jl") +""" +Run all testmodels in parallel and check if they pass. + +A selection can be made by passing the name(s) of the individual testmodel(s) as (an) argument(s). +""" function main(ARGS) toml_paths = get_testmodels() + if length(ARGS) > 0 + toml_paths = filter(x -> basename(dirname(x)) in ARGS, toml_paths) + end n_model = length(toml_paths) n_pass = 0 n_fail = 0