From 8c9c15759e67677dc9e786e6836218da820f9811 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Fri, 3 May 2024 10:11:34 +0200 Subject: [PATCH 1/3] Update pixi lock file (#1450) Update pixi dependencies to the latest version. Co-authored-by: GitHub --- pixi.lock | 5477 +++++++++++++++++++---------------------------------- 1 file changed, 1908 insertions(+), 3569 deletions(-) diff --git a/pixi.lock b/pixi.lock index 099e1df8c..d9c3f600d 100644 --- a/pixi.lock +++ b/pixi.lock @@ -11,20 +11,21 @@ environments: - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.6.0-pyhd8ed1ab_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/attrs-23.2.0-pyh71513ae_0.conda - - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.17-he0b1f16_2.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-auth-0.7.18-he0b1f16_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-cal-0.6.11-heb1d5e4_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.15-hd590300_0.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aws-c-compression-0.2.18-hce8ee76_3.conda - 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sha256: 29573d57e4ac57210dad94d1499871e705d439d9a370416d24a344f85c152874 - md5: 17098a5abd703bb6d2a71a4d7d4576a7 + version: 2.22.0 + build: hf0716ca_3 + build_number: 3 + subdir: osx-arm64 + url: https://conda.anaconda.org/conda-forge/osx-arm64/tiledb-2.22.0-hf0716ca_3.conda + sha256: 770fe4f59b428320159ddd5df9ea3b3a4005336bdffdb9e74a94b4fe22ffae22 + md5: 1d2b8eda91ab05de7e180210cb05082e depends: + - __osx >=11.0 - aws-crt-cpp >=0.26.8,<0.26.9.0a0 - aws-sdk-cpp >=1.11.267,<1.11.268.0a0 - azure-core-cpp >=1.11.1,<1.11.2.0a0 + - azure-identity-cpp >=1.6.0,<1.6.1.0a0 - azure-storage-blobs-cpp >=12.10.0,<12.10.1.0a0 - azure-storage-common-cpp >=12.5.0,<12.5.1.0a0 - bzip2 >=1.0.8,<2.0a0 - fmt >=10.2.1,<11.0a0 - libabseil * cxx17* - libabseil >=20240116.1,<20240117.0a0 - - libcrc32c >=1.1.2,<1.2.0a0 - libcurl >=8.7.1,<9.0a0 + - libcxx >=16 - libgoogle-cloud >=2.23.0,<2.24.0a0 - libgoogle-cloud-storage >=2.23.0,<2.24.0a0 - libwebp-base >=1.4.0,<2.0a0 @@ -35147,28 +33518,26 @@ packages: - lz4-c >=1.9.3,<1.10.0a0 - openssl >=3.2.1,<4.0a0 - spdlog >=1.13.0,<1.14.0a0 - - ucrt >=10.0.20348.0 - - vc >=14.2,<15 - - vc14_runtime >=14.29.30139 - zstd >=1.5.5,<1.6.0a0 license: MIT license_family: MIT - size: 3171041 - timestamp: 1714059720932 + size: 3511155 + timestamp: 1714047805844 - kind: conda name: tiledb - version: 2.21.2 - build: hf5f2543_4 - build_number: 4 + version: 2.22.0 + build: hf5f2543_3 + build_number: 3 subdir: osx-64 - url: https://conda.anaconda.org/conda-forge/osx-64/tiledb-2.21.2-hf5f2543_4.conda - sha256: 858667744004504cc03d26e8529099f874dba6830bc11223ea9e470e9f118216 - md5: 530b0cc7d390f18277b10b92e218fb7c + url: https://conda.anaconda.org/conda-forge/osx-64/tiledb-2.22.0-hf5f2543_3.conda + sha256: 8022a3fab9f68485cd36aeb81f233ebb74f850ed53a5ff6252b06cd3ced86ad7 + md5: cad00c1384c40715a438f3ac2cafcde9 depends: - __osx >=10.13 - aws-crt-cpp >=0.26.8,<0.26.9.0a0 - aws-sdk-cpp >=1.11.267,<1.11.268.0a0 - azure-core-cpp >=1.11.1,<1.11.2.0a0 + - azure-identity-cpp >=1.6.0,<1.6.1.0a0 - azure-storage-blobs-cpp >=12.10.0,<12.10.1.0a0 - azure-storage-common-cpp >=12.5.0,<12.5.1.0a0 - bzip2 >=1.0.8,<2.0a0 @@ -35187,44 +33556,8 @@ packages: - zstd >=1.5.5,<1.6.0a0 license: MIT license_family: MIT - size: 3891919 - timestamp: 1714060293699 -- kind: conda - name: tiledb - version: 2.21.2 - build: hfcadb87_1 - build_number: 1 - subdir: win-64 - url: https://conda.anaconda.org/conda-forge/win-64/tiledb-2.21.2-hfcadb87_1.conda - sha256: 17f9a81d575fc881c505d8b7fb8c4aa0461d686c1f67e64d39a4bfdb0a0fac63 - md5: 48bca001eafbfdbaeb4d7961d532a301 - depends: - - aws-crt-cpp >=0.26.6,<0.26.7.0a0 - - aws-sdk-cpp >=1.11.267,<1.11.268.0a0 - - azure-core-cpp >=1.11.1,<1.11.2.0a0 - - azure-storage-blobs-cpp >=12.10.0,<12.10.1.0a0 - - azure-storage-common-cpp >=12.5.0,<12.5.1.0a0 - - bzip2 >=1.0.8,<2.0a0 - - fmt >=10.2.1,<11.0a0 - - libabseil * cxx17* - - libabseil >=20240116.1,<20240117.0a0 - - libcrc32c >=1.1.2,<1.2.0a0 - - libcurl >=8.7.1,<9.0a0 - - libgoogle-cloud >=2.22.0,<2.23.0a0 - - libgoogle-cloud-storage >=2.22.0,<2.23.0a0 - - libwebp-base >=1.3.2,<2.0a0 - - libzlib >=1.2.13,<1.3.0a0 - - lz4-c >=1.9.3,<1.10.0a0 - - openssl >=3.2.1,<4.0a0 - - spdlog >=1.12.0,<1.13.0a0 - - ucrt >=10.0.20348.0 - - vc >=14.2,<15 - - vc14_runtime >=14.29.30139 - - zstd >=1.5.5,<1.6.0a0 - license: MIT - license_family: MIT - size: 3177709 - timestamp: 1712853976968 + size: 3911499 + timestamp: 1714046671075 - kind: conda name: tinycss2 version: 1.3.0 @@ -36091,6 +34424,7 @@ packages: - platformdirs <5,>=3.9.1 - python >=3.8 license: MIT + license_family: MIT size: 3459994 timestamp: 1714439521015 - kind: conda @@ -36957,13 +35291,13 @@ packages: timestamp: 1607291557628 - kind: conda name: xugrid - version: 0.9.0 + version: 0.10.0 build: pyhd8ed1ab_0 subdir: noarch noarch: python - url: https://conda.anaconda.org/conda-forge/noarch/xugrid-0.9.0-pyhd8ed1ab_0.conda - sha256: 0757cdbf0f92e68a3134588027511ea4c4f49002d397619c59bd73ab85ad4165 - md5: d6ef5b0239c439c99a37142f93b2c98b + url: https://conda.anaconda.org/conda-forge/noarch/xugrid-0.10.0-pyhd8ed1ab_0.conda + sha256: cf9b0c63b573405d5ac34a35819d98c10884abb0d49b19af0fc7414f8f44fa00 + md5: 7ef2f388e3b2adcecfed74591bff2451 depends: - dask - geopandas @@ -36978,8 +35312,8 @@ packages: - xarray >=0.15 license: MIT license_family: MIT - size: 93360 - timestamp: 1707992771856 + size: 94214 + timestamp: 1714580639671 - kind: conda name: xyzservices version: 2024.4.0 @@ -37104,70 +35438,75 @@ packages: - kind: conda name: zeromq version: 4.3.5 - build: h59595ed_2 - build_number: 2 - subdir: linux-64 - url: https://conda.anaconda.org/conda-forge/linux-64/zeromq-4.3.5-h59595ed_2.conda - sha256: 8768a16e74bfa570652b014d293dbdfdb7d4d3e9bd50d8f243febe30f5a8b673 - md5: 44399146a0595313866cd74cd2f31f46 + build: h5119023_3 + build_number: 3 + subdir: osx-arm64 + url: https://conda.anaconda.org/conda-forge/osx-arm64/zeromq-4.3.5-h5119023_3.conda + sha256: 5eb581b4191767645b973c8fab29a167da366e3f0f218198a4cdb264e902b681 + md5: bbd1b56c80c0b21506bbfa7bdd1c9169 depends: + - __osx >=11.0 - krb5 >=1.21.2,<1.22.0a0 - - libgcc-ng >=12 + - libcxx >=16 - libsodium >=1.0.18,<1.0.19.0a0 - - libstdcxx-ng >=12 license: MPL-2.0 - size: 351725 - timestamp: 1714482976966 + license_family: MOZILLA + size: 294273 + timestamp: 1714545428846 - kind: conda name: zeromq version: 4.3.5 - build: h63175ca_1 - build_number: 1 - subdir: win-64 - url: https://conda.anaconda.org/conda-forge/win-64/zeromq-4.3.5-h63175ca_1.conda - sha256: c9089e80a724a4d21f9df4bcc99ccbddb93c8cce3f6b0c9cb74b4f98b641dfc2 - md5: e8867cc4d023f41f54bd64a33436b0a1 + build: h75354e8_3 + build_number: 3 + subdir: linux-64 + url: https://conda.anaconda.org/conda-forge/linux-64/zeromq-4.3.5-h75354e8_3.conda + sha256: c2f2db5d19b603546db025b47fb71765f8dda0a0fe8feb42bd4e6a46194a5590 + md5: 1b0ea5d6674e4e7dde0537c890813edb depends: + - krb5 >=1.21.2,<1.22.0a0 + - libgcc-ng >=12 - libsodium >=1.0.18,<1.0.19.0a0 - - ucrt >=10.0.20348.0 - - vc >=14.2,<15 - - vc14_runtime >=14.29.30139 + - libstdcxx-ng >=12 license: MPL-2.0 license_family: MOZILLA - size: 4199151 - timestamp: 1709135717106 + size: 351803 + timestamp: 1714545110790 - kind: conda name: zeromq version: 4.3.5 - build: h93d8f39_0 + build: h8d87b8b_3 + build_number: 3 subdir: osx-64 - url: https://conda.anaconda.org/conda-forge/osx-64/zeromq-4.3.5-h93d8f39_0.conda - sha256: 19be553b3cc8352b6e842134b8de66ae39fcae80bc575c203076370faab6009c - md5: 4c055e46b394be36681fe476c1e2ee6e + url: https://conda.anaconda.org/conda-forge/osx-64/zeromq-4.3.5-h8d87b8b_3.conda + sha256: 2e367db3e568d285c217a8df6b42fe868d70dade9eccf30e5c9192931fc7752b + md5: 56ddf659a2f41a33a71c89813d871ff8 depends: - __osx >=10.9 - - libcxx >=16.0.6 + - krb5 >=1.21.2,<1.22.0a0 + - libcxx >=16 - libsodium >=1.0.18,<1.0.19.0a0 license: MPL-2.0 license_family: MOZILLA - size: 294253 - timestamp: 1697057208271 + size: 301306 + timestamp: 1714545592193 - kind: conda name: zeromq version: 4.3.5 - build: hebf3989_1 - build_number: 1 - subdir: osx-arm64 - url: https://conda.anaconda.org/conda-forge/osx-arm64/zeromq-4.3.5-hebf3989_1.conda - sha256: caf6df12d793600faec21b7e6025e2e8fb8de26672cce499f9471b99b6776eb1 - md5: 19cff1c627ff58429701113bf35300c8 + build: he0c23c2_3 + build_number: 3 + subdir: win-64 + url: https://conda.anaconda.org/conda-forge/win-64/zeromq-4.3.5-he0c23c2_3.conda + sha256: 8aecdcafccb73417d6a8d5c99b2b89644cd1e739e9419b70db2b97ddd344a58a + md5: a15710475b7ec416900e60560f6839ee depends: - - libcxx >=16 - libsodium >=1.0.18,<1.0.19.0a0 + - ucrt >=10.0.20348.0 + - vc >=14.2,<15 + - vc14_runtime >=14.29.30139 license: MPL-2.0 license_family: MOZILLA - size: 288572 - timestamp: 1709135728486 + size: 4196272 + timestamp: 1714545389805 - kind: conda name: zict version: 3.0.0 From 7fa68c72fc064310680d516a6595e148b1f568ea Mon Sep 17 00:00:00 2001 From: Jingru923 <47444880+Jingru923@users.noreply.github.com> Date: Fri, 3 May 2024 11:16:46 +0200 Subject: [PATCH 2/3] Re-enable validation in Ribasim python (#1446) Fixes #1333 --- python/ribasim/ribasim/config.py | 4 ++-- python/ribasim/ribasim/geometry/node.py | 2 +- python/ribasim/ribasim/model.py | 17 ----------------- python/ribasim/tests/test_model.py | 19 ++++--------------- 4 files changed, 7 insertions(+), 35 deletions(-) diff --git a/python/ribasim/ribasim/config.py b/python/ribasim/ribasim/config.py index 30408fe05..d36416862 100644 --- a/python/ribasim/ribasim/config.py +++ b/python/ribasim/ribasim/config.py @@ -7,7 +7,7 @@ import pandas as pd import pydantic from geopandas import GeoDataFrame -from pydantic import ConfigDict, Field, model_validator +from pydantic import ConfigDict, Field, NonNegativeInt, model_validator from shapely.geometry import Point from ribasim.geometry import BasinAreaSchema, NodeTable @@ -87,7 +87,7 @@ class Logging(ChildModel): class Node(pydantic.BaseModel): - node_id: int + node_id: NonNegativeInt geometry: Point name: str = "" subnetwork_id: int | None = None diff --git a/python/ribasim/ribasim/geometry/node.py b/python/ribasim/ribasim/geometry/node.py index d77a40f99..990dd394c 100644 --- a/python/ribasim/ribasim/geometry/node.py +++ b/python/ribasim/ribasim/geometry/node.py @@ -16,7 +16,7 @@ class NodeSchema(pa.SchemaModel): - node_id: Series[Int32] + node_id: Series[Int32] = pa.Field(ge=0) name: Series[str] = pa.Field(default="") node_type: Series[str] = pa.Field(default="") subnetwork_id: Series[pd.Int32Dtype] = pa.Field( diff --git a/python/ribasim/ribasim/model.py b/python/ribasim/ribasim/model.py index 10d078113..f47cda53d 100644 --- a/python/ribasim/ribasim/model.py +++ b/python/ribasim/ribasim/model.py @@ -231,23 +231,6 @@ def _children(self): if isinstance(getattr(self, k), ChildModel) } - def validate_model_node_field_ids(self): - raise NotImplementedError() - - def validate_model_node_ids(self): - raise NotImplementedError() - - def validate_model(self): - """Validate the model. - - Checks: - - Whether the node IDs of the node_type fields are valid - - Whether the node IDs in the node field correspond to the node IDs on the node type fields - """ - - self.validate_model_node_field_ids() - self.validate_model_node_ids() - @classmethod def read(cls, filepath: str | PathLike[str]) -> "Model": """Read model from TOML file.""" diff --git a/python/ribasim/tests/test_model.py b/python/ribasim/tests/test_model.py index 3e2ed89d6..c64ba479a 100644 --- a/python/ribasim/tests/test_model.py +++ b/python/ribasim/tests/test_model.py @@ -7,6 +7,7 @@ import xugrid from pydantic import ValidationError from pyproj import CRS +from ribasim import Node from ribasim.config import Solver from ribasim.geometry.edge import NodeData from ribasim.input_base import esc_id @@ -65,24 +66,12 @@ def test_exclude_unset(basic): assert d["solver"]["saveat"] == 86400.0 -@pytest.mark.xfail(reason="Needs implementation") -def test_invalid_node_id(basic): - model = basic - - # Add entry with invalid node ID - df = model.pump.static.df._append( - {"flow_rate": 1, "node_id": -1, "active": True}, - ignore_index=True, - ) - # Currently can't handle mixed NaN and None in a DataFrame - df = df.where(pd.notna(df), None) - model.pump.static.df = df - +def test_invalid_node_id(): with pytest.raises( ValueError, - match=re.escape("Node IDs must be non-negative integers, got [-1]."), + match=r".* Input should be greater than or equal to 0 .*", ): - model.validate_model_node_field_ids() + Node(-1, Point(7.0, 7.0)) @pytest.mark.xfail(reason="Should be reimplemented by the .add() API.") From 158fd050a0507dab254576b01451071255a2e944 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 6 May 2024 09:20:43 +0200 Subject: [PATCH 3/3] Bump julia-actions/cache from 1 to 2 (#1454) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Bumps [julia-actions/cache](https://github.com/julia-actions/cache) from 1 to 2.
Release notes

Sourced from julia-actions/cache's releases.

v2.0.0

Breaking Changes ⚠️

v2.0.0 requires node20. This is a breaking change, because node20 does not support the following operating systems:

  • Red Hat Enterprise Linux 7
  • CentOS 7
  • Oracle Linux 7
  • Debian 9
  • Ubuntu 16.04
  • Linux Mint 18
  • openSUSE 15
  • SUSE Enterprise Linux (SLES) 12 SP2
  • Windows 7 64-bit
  • Windows 8.1 64-bit

Therefore, if you are using self-hosted runners on one of the above operating systems, you won't be able to run v2 of this action.

In contrast, v1 of this action uses node16.

What's Changed

New Contributors

Full Changelog: https://github.com/julia-actions/cache/compare/v1.5.2...v2.0.0

v1.5.2: Cache tidy fixes. Existing registry fix.

What's Changed

... (truncated)

Commits

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Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/core_testmodels.yml | 2 +- .github/workflows/core_tests.yml | 2 +- .github/workflows/docs.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/core_testmodels.yml b/.github/workflows/core_testmodels.yml index 9679cbbf8..91d5f6e3f 100644 --- a/.github/workflows/core_testmodels.yml +++ b/.github/workflows/core_testmodels.yml @@ -29,7 +29,7 @@ jobs: - x64 steps: - uses: actions/checkout@v4 - - uses: julia-actions/cache@v1 + - uses: julia-actions/cache@v2 with: cache-compiled: "true" cache-registries: "true" diff --git a/.github/workflows/core_tests.yml b/.github/workflows/core_tests.yml index 2ba330004..921469bc4 100644 --- a/.github/workflows/core_tests.yml +++ b/.github/workflows/core_tests.yml @@ -29,7 +29,7 @@ jobs: - x64 steps: - uses: actions/checkout@v4 - - uses: julia-actions/cache@v1 + - uses: julia-actions/cache@v2 with: cache-compiled: "true" cache-registries: "true" diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index ccd50d8e5..622ba67f7 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -20,7 +20,7 @@ jobs: contents: write steps: - uses: actions/checkout@v4 - - uses: julia-actions/cache@v1 + - uses: julia-actions/cache@v2 with: cache-compiled: "true" cache-registries: "true"