From a5cd605e88a9812b66bf5e643bcd39f9c6179efb Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Tue, 31 Oct 2023 16:19:28 +0100 Subject: [PATCH 01/32] pixi: Instantiate consistently (#717) Also check in `docs/Manifest.toml` --- docs/Manifest.toml | 142 +++++++++++++++++++++++++++++++++++++++++++++ pixi.toml | 18 ++++-- 2 files changed, 155 insertions(+), 5 deletions(-) create mode 100644 docs/Manifest.toml diff --git a/docs/Manifest.toml b/docs/Manifest.toml new file mode 100644 index 000000000..0ea664daa --- /dev/null +++ b/docs/Manifest.toml @@ -0,0 +1,142 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.9.3" +manifest_format = "2.0" +project_hash = "f9da26c97b8dd21bb861d490428435c07bbfff72" + +[[deps.ANSIColoredPrinters]] +git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" +uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" +version = "0.0.1" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" + +[[deps.Dates]] +deps = ["Printf"] +uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" + +[[deps.DocStringExtensions]] +deps = ["LibGit2"] +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" +version = "0.9.3" + +[[deps.Documenter]] +deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] +git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67" +uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" +version = "0.27.25" + +[[deps.DocumenterMarkdown]] +deps = ["Documenter"] +git-tree-sha1 = "9af057a98652336e30586d8092fac06f8b28ecdc" +uuid = "997ab1e6-3595-5248-9280-8efb232c3433" +version = "0.2.2" + +[[deps.IOCapture]] +deps = ["Logging", "Random"] +git-tree-sha1 = "d75853a0bdbfb1ac815478bacd89cd27b550ace6" +uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" +version = "0.2.3" + +[[deps.InteractiveUtils]] +deps = ["Markdown"] +uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" + +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + +[[deps.JSON3]] +deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] +git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3" +uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" +version = "1.13.2" + +[[deps.LibGit2]] +deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" + +[[deps.Logging]] +uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" + +[[deps.Markdown]] +deps = ["Base64"] +uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" + +[[deps.Mmap]] +uuid = "a63ad114-7e13-5084-954f-fe012c677804" + +[[deps.NetworkOptions]] +uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" + +[[deps.OrderedCollections]] +git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +version = "1.6.2" + +[[deps.Parsers]] +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +version = "2.7.2" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.0" + +[[deps.Preferences]] +deps = ["TOML"] +git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +uuid = "21216c6a-2e73-6563-6e65-726566657250" +version = "1.4.1" + +[[deps.Printf]] +deps = ["Unicode"] +uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" + +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + +[[deps.Random]] +deps = ["SHA", "Serialization"] +uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + +[[deps.SHA]] +uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" + +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + +[[deps.Sockets]] +uuid = "6462fe0b-24de-5631-8697-dd941f90decc" + +[[deps.StructTypes]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" +uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" +version = "1.10.0" + +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + +[[deps.Test]] +deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] +uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" + +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" diff --git a/pixi.toml b/pixi.toml index 1a4e15a13..5957568b0 100644 --- a/pixi.toml +++ b/pixi.toml @@ -26,8 +26,16 @@ install-without-pre-commit = { depends_on = [ "install-quartodoc", ] } install = { depends_on = ["install-without-pre-commit", "install-pre-commit"] } +# Instantiate +instantiate-julia-core = "julia --project=core --eval='using Pkg; Pkg.instantiate()'" +instantiate-julia-docs = "julia --project=docs --eval='using Pkg; Pkg.instantiate()'" +instantiate-julia-build = "julia --project=build/create_binaries --eval='using Pkg; Pkg.instantiate()'" +instantiate-julia = { depends_on = [ + "instantiate-julia-core", + "instantiate-julia-docs", + "instantiate-julia-build", +] } # Docs -instantiate-julia-docs = "julia --project=docs -e \"using Pkg; Pkg.instantiate()\"" build-julia-docs = { cmd = "julia --project=docs docs/make.jl", depends_on = [ "instantiate-julia-docs", ] } @@ -52,21 +60,21 @@ lint = { depends_on = [ "mypy-ribasim-api", ] } # Build -instantiate-build-environment = "cd build/create_binaries && julia --project --eval \"using Pkg; Pkg.instantiate()\"" build-ribasim-cli = { cmd = "cd build/create_binaries && julia --project create_app.jl", depends_on = [ "generate-testmodels", - "instantiate-build-environment", + "instantiate-julia-build", ] } build-libribasim = { cmd = "cd build/create_binaries && julia --project create_lib.jl", depends_on = [ "generate-testmodels", - "instantiate-build-environment", + "instantiate-julia-build", ] } build = { depends_on = ["build-ribasim-cli", "build-libribasim"] } # Test test-ribasim-python = "pytest --numprocesses=auto python/ribasim/tests" test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=report.xml python/ribasim_api/tests" test-ribasim-cli = "pytest --numprocesses=auto --basetemp=build/ribasim_cli/tests/temp --junitxml=report.xml build/ribasim_cli/tests" -test-ribasim-core = { cmd = "julia --project=core --eval 'using Pkg; Pkg.instantiate(); Pkg.test()'", depends_on = [ +test-ribasim-core = { cmd = "julia --project=core --eval 'Pkg.test()'", depends_on = [ + "instantiate-julia-core", "generate-testmodels", ] } generate-testmodels = "python utils/generate-testmodels.py" From 31275b7f1610b787425434f06012ac2f7d8448e8 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Tue, 31 Oct 2023 19:27:58 +0100 Subject: [PATCH 02/32] Update to python 3.12, pandas 2.1.2 (#713) Part of #654 Fixes #645 I ran `pixi add pandas=2.1.2 python=3.12 pyogrio=0.7.2` using pixi v0.5.0 so as not to update the lockfile format. The new pyogrio release is needed to be able to use Python 3.12. We only update the Python version in the Pixi lockfile and on CI, this does not change our minimum supported Python version. The pandas update to 2.1.2 fixes a regression present in 2.1.0 and 2.1.1, no further changes were needed in our code. @Hofer-Julian I simply removed the `pandas < 2.1` restriction in the pyproject.toml, assuming that is fine since with the release of pandas 2.1.2 most people won't get 2.1.0 or 2.1.1 anymore, though I guess we could exclude multiple patch releases. --- .github/workflows/pre-commit_auto_update.yml | 2 +- .github/workflows/pre-commit_check.yml | 2 +- pixi.lock | 5522 +++++++++--------- pixi.toml | 2 +- python/ribasim/pyproject.toml | 2 +- 5 files changed, 2807 insertions(+), 2723 deletions(-) diff --git a/.github/workflows/pre-commit_auto_update.yml b/.github/workflows/pre-commit_auto_update.yml index bfe8f0621..eb653d784 100644 --- a/.github/workflows/pre-commit_auto_update.yml +++ b/.github/workflows/pre-commit_auto_update.yml @@ -16,7 +16,7 @@ jobs: ssh-key: ${{ secrets.SSH_PRIVATE_KEY }} - uses: actions/setup-python@v4 with: - python-version: "3.11" + python-version: "3.12" - uses: browniebroke/pre-commit-autoupdate-action@main - uses: peter-evans/create-pull-request@v5 with: diff --git a/.github/workflows/pre-commit_check.yml b/.github/workflows/pre-commit_check.yml index 2876b910a..79db2e474 100644 --- a/.github/workflows/pre-commit_check.yml +++ b/.github/workflows/pre-commit_check.yml @@ -13,5 +13,5 @@ jobs: - uses: actions/checkout@v4 - uses: actions/setup-python@v4 with: - python-version: "3.11" + python-version: "3.12" - uses: pre-commit/action@v3.0.0 diff --git a/pixi.lock b/pixi.lock index 25319a584..416b5eff1 100644 --- a/pixi.lock +++ b/pixi.lock @@ -416,91 +416,91 @@ package: dependencies: cffi: '>=1.0.1' libgcc-ng: '>=12' - python: '>=3.11,<3.12.0a0' - python_abi: 3.11.* *_cp311 - url: https://conda.anaconda.org/conda-forge/linux-64/argon2-cffi-bindings-21.2.0-py311h459d7ec_4.conda + python: '>=3.12.0rc3,<3.13.0a0' + python_abi: 3.12.* *_cp312 + url: https://conda.anaconda.org/conda-forge/linux-64/argon2-cffi-bindings-21.2.0-py312h98912ed_4.conda hash: - 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size: 36406 - timestamp: 1696506575491 + size: 36184 + timestamp: 1698325478381 - name: xyzservices - version: 2023.10.0 + version: 2023.10.1 manager: conda platform: osx-arm64 dependencies: python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.1-pyhd8ed1ab_0.conda hash: - md5: 9c6fe7db9c9133ade38b9a5011103243 - sha256: 21662312078b887bcc5818695e871d81ad87b60eec73f9f8fa35c8f5d4252608 + md5: 1e0d85c0e2fef9539218da185b285f54 + sha256: da655e2e0a742fddefeeaf2dd828b62a1820a3755d13341e1a555a10fcb9cf81 optional: false category: main build: pyhd8ed1ab_0 @@ -33235,18 +33319,18 @@ package: license: BSD-3-Clause license_family: BSD noarch: python - size: 36406 - timestamp: 1696506575491 + size: 36184 + timestamp: 1698325478381 - name: xyzservices - version: 2023.10.0 + version: 2023.10.1 manager: conda platform: win-64 dependencies: python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.1-pyhd8ed1ab_0.conda hash: - md5: 9c6fe7db9c9133ade38b9a5011103243 - sha256: 21662312078b887bcc5818695e871d81ad87b60eec73f9f8fa35c8f5d4252608 + md5: 1e0d85c0e2fef9539218da185b285f54 + sha256: da655e2e0a742fddefeeaf2dd828b62a1820a3755d13341e1a555a10fcb9cf81 optional: false category: main build: pyhd8ed1ab_0 @@ -33256,8 +33340,8 @@ package: license: BSD-3-Clause license_family: BSD noarch: python - size: 36406 - timestamp: 1696506575491 + size: 36184 + timestamp: 1698325478381 - name: xz version: 5.2.6 manager: conda diff --git a/pixi.toml b/pixi.toml index 5957568b0..d777a8780 100644 --- a/pixi.toml +++ b/pixi.toml @@ -95,7 +95,7 @@ geopandas = "*" jupyterlab = "*" matplotlib = "*" mypy = "*" -pandas = "<2.1" +pandas = "*" pandas-stubs = "*" pandera = "*" pip = "*" diff --git a/python/ribasim/pyproject.toml b/python/ribasim/pyproject.toml index aa1e3142b..1a7286ae4 100644 --- a/python/ribasim/pyproject.toml +++ b/python/ribasim/pyproject.toml @@ -16,7 +16,7 @@ requires-python = ">=3.9" dependencies = [ "geopandas", "matplotlib", - "pandas < 2.1", + "pandas", "pandera != 0.16.0", "pyarrow", "pydantic ~= 1.0", From 5065be95794dd0c3d2d0608e1067315b7b695de4 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 1 Nov 2023 06:41:32 +0100 Subject: [PATCH 03/32] Update pre-commit hooks (#724) Update versions of pre-commit hooks to latest version. Co-authored-by: GitHub --- .pre-commit-config.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 8c0b2ef9c..7aacfaa44 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.4.0 + rev: v4.5.0 hooks: - id: check-added-large-files - id: check-case-conflict @@ -14,7 +14,7 @@ repos: exclude: '.teamcity' - id: trailing-whitespace - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.1.2 + rev: v0.1.3 hooks: - id: ruff types_or: [python, pyi, jupyter] @@ -26,6 +26,6 @@ repos: hooks: - id: nbstripout - repo: https://github.com/crate-ci/typos - rev: v1.16.15 + rev: v1.16.21 hooks: - id: typos From 14ae29e85632ef97158117b0934516010fd9dd14 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Wed, 1 Nov 2023 09:23:03 +0100 Subject: [PATCH 04/32] Use actions-gh-pages (#725) Since we already render the page, this simpler action should be enough. Just checking if the CI works is not enough for this PR. After it is merged, we need to check if it also works on main and if my small doc changes pop up. --- .github/workflows/docs.yml | 9 +++------ docs/core/allocation.qmd | 4 ++-- 2 files changed, 5 insertions(+), 8 deletions(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 10eece3c8..257a9fdea 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -53,14 +53,11 @@ jobs: - name: Render Quarto Project run: pixi run quarto-render - - name: Set up Quarto for publish - uses: quarto-dev/quarto-actions/setup@v2 - name: Publish Quarto Project if: github.ref == 'refs/heads/main' - uses: quarto-dev/quarto-actions/publish@v2 + uses: peaceiris/actions-gh-pages@v3 with: - path: docs - render: false - target: gh-pages + github_token: ${{ secrets.GITHUB_TOKEN }} + publish_dir: ./docs env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index a8706f8d6..9db6110a5 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -140,12 +140,12 @@ $$ \hat{V}^{\text{out}}_S(\hat{k}) = \{\hat{j}\}. \end{align} $$ {#eq-returnflowconstraint} -Here we use that each user node in the allocation graph has an unique in-edge and out-edge. +Here we use that each user node in the allocation graph has a unique in-edge and out-edge. - User allocation: The flow over the edge to the user is equal to the sum of the allocations to the user: $$ F_{\hat{i}\hat{k}} = \sum_{p=1}^{p_\max} A^\text{user}_{\hat{k},p}, \quad \forall \hat{k} \in \hat{U}_S, \hat{V}^{\text{out}}_s(\hat{k}) = \{\hat{i}\}. $$ {#eq-userallocationconstraint} -Here we use that each user has an unique out-edge. +Here we use that each user has a unique out-edge. - User demand: what is allocated to the user is bounded above by the user demand: $$ A_{\hat{i},p}^\text{user} \leq d_i^p(t) \quad \forall\hat{i} \in \hat{U}_S, \; p = 1,\ldots,p_\max. From 5b25a626c12e54577814569b3177bdf4369b5d8e Mon Sep 17 00:00:00 2001 From: Hofer-Julian Date: Wed, 1 Nov 2023 10:04:13 +0100 Subject: [PATCH 05/32] Fix quarto publish path --- .github/workflows/docs.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 257a9fdea..a9a39d0b4 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -58,6 +58,6 @@ jobs: uses: peaceiris/actions-gh-pages@v3 with: github_token: ${{ secrets.GITHUB_TOKEN }} - publish_dir: ./docs + publish_dir: ./docs/_site env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} From 61b2ec4d498a633797491447987929c10889c9ad Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Fri, 3 Nov 2023 10:32:01 +0100 Subject: [PATCH 06/32] Back to LP solve per priority (#715) Fixes https://github.com/Deltares/Ribasim/issues/706. --- core/src/Ribasim.jl | 1 - core/src/allocation.jl | 293 +++++++++++++++++---------------------- core/src/solve.jl | 4 +- core/test/allocation.jl | 6 +- docs/core/allocation.qmd | 176 +++++++++-------------- 5 files changed, 205 insertions(+), 275 deletions(-) diff --git a/core/src/Ribasim.jl b/core/src/Ribasim.jl index 8a6f28765..7f68deec4 100644 --- a/core/src/Ribasim.jl +++ b/core/src/Ribasim.jl @@ -18,7 +18,6 @@ import IterTools import BasicModelInterface as BMI import HiGHS import JuMP -import JuMP.Model as JuMPModel import TranscodingStreams using Arrow: Arrow, Table diff --git a/core/src/allocation.jl b/core/src/allocation.jl index 2f06032f9..d66ca698e 100644 --- a/core/src/allocation.jl +++ b/core/src/allocation.jl @@ -353,11 +353,12 @@ function allocation_graph( # Used for updating user demand and source flow constraints allocgraph_edges = collect(edges(graph_allocation)) - allocgraph_edge_ids_user_demand = Int[] + allocgraph_edge_ids_user_demand = Dict{Int, Int}() for (i, allocgraph_edge) in enumerate(allocgraph_edges) - allocgraph_node_type_dst = node_id_mapping_inverse[allocgraph_edge.dst][2] + allocgraph_node_id_dst = allocgraph_edge.dst + allocgraph_node_type_dst = node_id_mapping_inverse[allocgraph_node_id_dst][2] if allocgraph_node_type_dst == :user - push!(allocgraph_edge_ids_user_demand, i) + allocgraph_edge_ids_user_demand[allocgraph_node_id_dst] = i end end @@ -366,7 +367,6 @@ function allocation_graph( node_id_mapping, node_id_mapping_inverse, source_edge_mapping, - allocgraph_node_ids_user, allocgraph_node_ids_user_with_returnflow, allocgraph_edges, allocgraph_edge_ids_user_demand @@ -378,7 +378,7 @@ The variable indices are the allocation graph edge IDs. Non-negativivity constraints are also immediately added to the flow variables. """ function add_variables_flow!( - problem::JuMPModel, + problem::JuMP.Model, allocgraph_edges::Vector{Edge{Int}}, )::Nothing n_flows = length(allocgraph_edges) @@ -386,33 +386,13 @@ function add_variables_flow!( return nothing end -""" -Add the user allocation variables A_user_{i} to the allocation problem. -The variable name indices i are the allocation graph user node IDs, -The variable indices are the priorities. -""" -function add_variables_allocation_user!( - problem::JuMPModel, - user::User, - allocgraph_edges::Vector{Edge{Int}}, - allocgraph_edge_ids_user_demand::Vector{Int}, -)::Nothing - for allocgraph_edge_id_user_demand in allocgraph_edge_ids_user_demand - allocgraph_node_id_user = allocgraph_edges[allocgraph_edge_id_user_demand].dst - base_name = "A_user_$allocgraph_node_id_user" - problem[Symbol(base_name)] = - JuMP.@variable(problem, [1:length(user.priorities)], base_name = base_name) - end - return nothing -end - """ Add the basin allocation variables A_basin to the allocation problem. The variable indices are the allocation graph basin node IDs. Non-negativivity constraints are also immediately added to the basin allocation variables. """ function add_variables_allocation_basin!( - problem::JuMPModel, + problem::JuMP.Model, node_id_mapping::Dict{Int, Tuple{Int, Symbol}}, allocgraph_node_ids_basin::Vector{Int}, )::Nothing @@ -422,47 +402,19 @@ end """ Add the user allocation constraints to the allocation problem: -- The sum of the allocations to a user is equal to the flow to that user; -- The allocations to the users are non-negative; -- The allocations to the users are bounded from above by the user demands - (these are set before each allocation solve). - -The demand constrains have name demand_user_{i} where the i are the allocation graph -user node IDs and the constraint indices are the priorities. - -Constraints: -sum(allocations to user of all priorities) = flow to user -allocation to user at priority >= 0 -allocation to user at priority <= demand from user at priority +The flow to a user is bounded from above by the demand of the user. """ function add_constraints_user_allocation!( - problem::JuMPModel, - user::User, - allocgraph_edges::Vector{Edge{Int}}, - allocgraph_edge_ids_user_demand::Vector{Int}, + problem::JuMP.Model, + allocgraph_edge_ids_user_demand::Dict{Int, Int}, )::Nothing F = problem[:F] - for allocgraph_edge_id_user_demand in allocgraph_edge_ids_user_demand - allocgraph_node_id_user = allocgraph_edges[allocgraph_edge_id_user_demand].dst - base_name = "A_user_$allocgraph_node_id_user" - A_user = problem[Symbol(base_name)] - # Sum of allocations to user is total flow to user - JuMP.@constraint( - problem, - sum(A_user) == F[allocgraph_edge_id_user_demand], - base_name = "allocation_sum[$allocgraph_node_id_user]" - ) - # Allocation flows are non-negative - JuMP.@constraint(problem, [p = 1:length(user.priorities)], A_user[p] >= 0) - # Allocation flows are bounded from above by demands - base_name = "demand_user_$allocgraph_node_id_user" - problem[Symbol(base_name)] = JuMP.@constraint( - problem, - [p = 1:length(user.priorities)], - A_user[p] <= 0, - base_name = base_name - ) - end + # Allocation flows are bounded from above by demands + problem[:demand_user] = JuMP.@constraint( + problem, + [i = values(allocgraph_edge_ids_user_demand)], + F[i] <= 0.0 + ) return nothing end @@ -476,7 +428,7 @@ Constraint: allocation to basin <= basin demand """ function add_constraints_basin_allocation!( - problem::JuMPModel, + problem::JuMP.Model, allocgraph_node_ids_basin::Vector{Int}, )::Nothing A_basin = problem[:A_basin] @@ -498,7 +450,7 @@ Constraint: flow over edge <= edge capacity """ function add_constraints_capacity!( - problem::JuMPModel, + problem::JuMP.Model, capacity::SparseMatrixCSC{Float64, Int}, allocgraph_edges::Vector{Edge{Int}}, )::Nothing @@ -527,7 +479,7 @@ Constraint: flow over source edge <= source flow in subnetwork """ function add_constraints_source!( - problem::JuMPModel, + problem::JuMP.Model, source_edge_mapping::Dict{Int, Int}, allocgraph_edges::Vector{Edge{Int}}, graph_allocation::DiGraph{Int}, @@ -553,7 +505,7 @@ Constraint: sum(flows out of node node) <= flows into node + flow from storage and vertical fluxes """ function add_constraints_flow_conservation!( - problem::JuMPModel, + problem::JuMP.Model, allocgraph_node_ids_basin::Vector{Int}, allocgraph_node_inedge_ids::Dict{Int, Vector{Int}}, allocgraph_node_outedge_ids::Dict{Int, Vector{Int}}, @@ -580,7 +532,7 @@ Constraint: outflow from user = return factor * inflow to user """ function add_constraints_user_returnflow!( - problem::JuMPModel, + problem::JuMP.Model, allocgraph_node_ids_user_with_returnflow::Vector{Int}, )::Nothing F = problem[:F] @@ -597,28 +549,19 @@ function add_constraints_user_returnflow!( end """ -Add the objective function to the allocation problem. -Objective function: linear combination of allocations to the basins and users, where - basin allocations get a weight of 1.0 and user allocations get a weight of 2^(-priority index). +Add the objective function to be maximized to the allocation problem. +Objective function: Sum of flows to the users. """ function add_objective_function!( - problem::JuMPModel, - user::User, - allocgraph_node_ids_user::Vector{Int}, + problem::JuMP.Model, + allocgraph_edge_ids_user_demand::Dict{Int, Int}, )::Nothing + F = problem[:F] A_basin = problem[:A_basin] - allocation_user_weights = 1 ./ (2 .^ (1:length(user.priorities))) - allocation_user_variables = [ - problem[Symbol("A_user_$allocgraph_node_id_user")] for - allocgraph_node_id_user in allocgraph_node_ids_user - ] JuMP.@objective( problem, Max, - sum(A_basin) + sum([ - sum(allocation_user_variable .* allocation_user_weights) for - allocation_user_variable in allocation_user_variables - ]) + sum(A_basin) + sum([F[i] for i in values(allocgraph_edge_ids_user_demand)]) ) return nothing end @@ -627,18 +570,14 @@ end Construct the allocation problem for the current subnetwork as a JuMP.jl model. """ function allocation_problem( - p::Parameters, node_id_mapping::Dict{Int, Tuple{Int, Symbol}}, - allocgraph_node_ids_user::Vector{Int}, allocgraph_node_ids_user_with_returnflow::Vector{Int}, allocgraph_edges::Vector{Edge{Int}}, - allocgraph_edge_ids_user_demand::Vector{Int}, + allocgraph_edge_ids_user_demand::Dict{Int, Int}, source_edge_mapping::Dict{Int, Int}, graph_allocation::DiGraph{Int}, capacity::SparseMatrixCSC{Float64, Int}, -)::JuMPModel - (; user) = p - +)::JuMP.Model allocgraph_node_ids_basin = sort([ allocgraph_node_id for (allocgraph_node_id, node_type) in values(node_id_mapping) if node_type == :basin @@ -648,25 +587,14 @@ function allocation_problem( get_node_in_out_edges(graph_allocation) optimizer = JuMP.optimizer_with_attributes(HiGHS.Optimizer, "log_to_console" => false) - problem = JuMPModel(optimizer) + problem = JuMP.direct_model(optimizer) # Add variables to problem add_variables_flow!(problem, allocgraph_edges) - add_variables_allocation_user!( - problem, - user, - allocgraph_edges, - allocgraph_edge_ids_user_demand, - ) add_variables_allocation_basin!(problem, node_id_mapping, allocgraph_node_ids_basin) # Add constraints to problem - add_constraints_user_allocation!( - problem, - user, - allocgraph_edges, - allocgraph_edge_ids_user_demand, - ) + add_constraints_user_allocation!(problem, allocgraph_edge_ids_user_demand) add_constraints_basin_allocation!(problem, allocgraph_node_ids_basin) add_constraints_capacity!(problem, capacity, allocgraph_edges) add_constraints_source!( @@ -685,7 +613,7 @@ function allocation_problem( # TODO: The fractional flow constraints # Add objective to problem - add_objective_function!(problem, user, allocgraph_node_ids_user) + add_objective_function!(problem, allocgraph_edge_ids_user_demand) return problem end @@ -722,7 +650,6 @@ function AllocationModel( node_id_mapping, node_id_mapping_inverse, source_edge_mapping, - allocgraph_node_ids_user, allocgraph_node_ids_user_with_returnflow, allocgraph_edges, allocgraph_edge_ids_user_demand = @@ -730,9 +657,7 @@ function AllocationModel( # The JuMP.jl allocation problem problem = allocation_problem( - p, node_id_mapping, - allocgraph_node_ids_user, allocgraph_node_ids_user_with_returnflow, allocgraph_edges, allocgraph_edge_ids_user_demand, @@ -745,6 +670,7 @@ function AllocationModel( subnetwork_node_ids, node_id_mapping, node_id_mapping_inverse, + allocgraph_edge_ids_user_demand, source_edge_mapping, graph_allocation, capacity, @@ -754,50 +680,26 @@ function AllocationModel( end """ -Update the allocation problem with model data at the current: -- Demands of the users -- Flows of the source edges -- Demands of the basins +Set the demands of the users of the current time and priority +in the allocation problem. """ -function set_model_state_in_allocation!( +function set_demands_priority!( allocation_model::AllocationModel, - p::Parameters, + user::User, + priority_idx::Int, t::Float64, )::Nothing - (; problem, node_id_mapping, source_edge_mapping) = allocation_model - (; user, connectivity) = p - (; priorities, demand) = user - (; flow, edge_ids_flow_inv) = connectivity - - # It is assumed that the allocation procedure does not have to be differentiated. - flow = get_tmp(flow, 0) - - for (subnetwork_node_id, (allocgraph_node_id, allocgraph_node_type)) in node_id_mapping - if allocgraph_node_type == :user - node_idx = findsorted(user.node_id, subnetwork_node_id) - demand_node = demand[node_idx] - base_name = "demand_user_$allocgraph_node_id" - constraints_demand = problem[Symbol(base_name)] - for priority_idx in eachindex(priorities) - JuMP.set_normalized_rhs( - constraints_demand[priority_idx], - demand_node[priority_idx](t), - ) - end - elseif allocgraph_node_type == :source - subnetwork_edge = source_edge_mapping[allocgraph_node_id] - subnetwork_node_ids = edge_ids_flow_inv[subnetwork_edge] - constraint_source = problem[:source][allocgraph_node_id] - JuMP.set_normalized_rhs(constraint_source, flow[subnetwork_node_ids]) - elseif allocgraph_node_type == :basin - # TODO: Compute basin flow from vertical fluxes and basin volume. - # Set as basin demand if the net flow is negative, set as source - # in the flow_conservation constraints if the net flow is positive. - elseif allocgraph_node_type == :junction - nothing - else - error("Got unsupported allocation graph node type $allocgraph_node_type.") - end + (; problem, allocgraph_edge_ids_user_demand, node_id_mapping_inverse) = allocation_model + (; demand, node_id) = user + constraints_demand = problem[:demand_user] + + for (allocgraph_node_id, allocgraph_edge_id) in allocgraph_edge_ids_user_demand + model_user_id = node_id_mapping_inverse[allocgraph_node_id][1] + user_idx = findsorted(node_id, model_user_id) + JuMP.set_normalized_rhs( + constraints_demand[allocgraph_edge_id], + demand[user_idx][priority_idx](t), + ) end return nothing end @@ -806,34 +708,99 @@ end Assign the allocations to the users as determined by the solution of the allocation problem. """ function assign_allocations!(allocation_model::AllocationModel, user::User)::Nothing - (; problem, node_id_mapping) = allocation_model - for (subnetwork_node_id, (allocgraph_node_id, allocgraph_node_type)) in node_id_mapping - if allocgraph_node_type == :user - user_idx = findsorted(user.node_id, subnetwork_node_id) - base_name = "A_user_$allocgraph_node_id" - user.allocated[user_idx] .= JuMP.value.(problem[Symbol(base_name)]) - end + (; problem, allocgraph_edge_ids_user_demand, node_id_mapping_inverse) = allocation_model + F = problem[:F] + for (allocgraph_node_id, allocgraph_edge_id) in allocgraph_edge_ids_user_demand + model_node_id = node_id_mapping_inverse[allocgraph_node_id][1] + user_idx = findsorted(user.node_id, model_node_id) + user.allocated[user_idx] .= JuMP.value(F[allocgraph_edge_id]) + end + return nothing +end + +""" +Set the source flows as capacities on edges in the AG. +""" +function set_source_flows!(allocation_model::AllocationModel, p::Parameters)::Nothing + (; problem, source_edge_mapping) = allocation_model + edge_ids_flow_inv = p.connectivity.edge_ids_flow_inv + + # It is assumed that the allocation procedure does not have to be differentiated. + flow = get_tmp(p.connectivity.flow, 0) + + for (allocgraph_source_node_id, subnetwork_source_edge_id) in source_edge_mapping + edge_ids = edge_ids_flow_inv[subnetwork_source_edge_id] + JuMP.set_normalized_rhs(problem[:source][allocgraph_source_node_id], flow[edge_ids]) end return nothing end +""" +Set the values of the edge capacities. 2 cases: +- Before the first allocation solve, set the edge capacities to their full capacity; +- Before an allocation solve, subtract the flow used by allocation for the previous priority + from the edge capacities. +""" +function adjust_edge_capacities!( + allocation_model::AllocationModel, + priority_idx::Int, +)::Nothing + (; problem, capacity, graph_allocation) = allocation_model + constraints_capacity = problem[:capacity] + F = problem[:F] + + for (i, e) in enumerate(edges(graph_allocation)) + c = capacity[e.src, e.dst] + + # Edges with infinite capacity have no capacity constraints + if isinf(c) + continue + end + + if priority_idx == 1 + # Before the first allocation solve, set the edge capacities to their full capacity + JuMP.set_normalized_rhs(constraints_capacity[i], c) + else + # Before an allocation solve, subtract the flow used by allocation for the previous priority + # from the edge capacities + JuMP.set_normalized_rhs( + constraints_capacity[i], + JuMP.normalized_rhs(constraints_capacity[i]) - JuMP.value(F[i]), + ) + end + end +end + """ Update the allocation optimization problem for the given subnetwork with the problem state and flows, solve the allocation problem and assign the results to the users. """ function allocate!(p::Parameters, allocation_model::AllocationModel, t::Float64)::Nothing + (; user) = p (; problem) = allocation_model - # Update allocation problem with data from main model - set_model_state_in_allocation!(allocation_model, p, t) + set_source_flows!(allocation_model, p) - # Solve the allocation problem - JuMP.optimize!(problem) - @debug JuMP.solution_summary(problem) - if JuMP.termination_status(problem) !== JuMP.OPTIMAL - error("Allocation coudn't find optimal solution.") - end + # TODO: Compute basin flow from vertical fluxes and basin volume. + # Set as basin demand if the net flow is negative, set as source + # in the flow_conservation constraints if the net flow is positive. + # Solve this as a separate problem before the priorities below + + for priority_idx in eachindex(user.priorities) + # Subtract the flows used by the allocation of the previous priority from the capacities of the edges + # or set edge capacities if priority_idx = 1 + adjust_edge_capacities!(allocation_model, priority_idx) - # Assign the allocations to the users - assign_allocations!(allocation_model, p.user) + set_demands_priority!(allocation_model, user, priority_idx, t) + + # Solve the allocation problem for this priority + JuMP.optimize!(problem) + @debug JuMP.solution_summary(problem) + if JuMP.termination_status(problem) !== JuMP.OPTIMAL + error("Allocation coudn't find optimal solution.") + end + + # Assign the allocations to the users for this priority + assign_allocations!(allocation_model, p.user) + end end diff --git a/core/src/solve.jl b/core/src/solve.jl index 1e4d15ae9..db3c5c957 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -11,6 +11,7 @@ node_id: All the IDs of the nodes that are in this subnetwork node_id_mapping: Mapping Dictionary; model_node_id => AG_node_id where such a correspondence exists (all AG node ids are in the values) node_id_mapping_inverse: The inverse of node_id_mapping, Dictionary; AG node ID => model node ID +allocgraph_edge_ids_user_demand: AG user node ID => AG user inflow edge ID Source edge mapping: AG source node ID => subnetwork source edge ID graph_allocation: The graph used for the allocation problems capacity: The capacity per edge of the allocation graph, as constrained by nodes that have a max_flow_rate @@ -21,10 +22,11 @@ struct AllocationModel node_id::Vector{Int} node_id_mapping::Dict{Int, Tuple{Int, Symbol}} node_id_mapping_inverse::Dict{Int, Tuple{Int, Symbol}} + allocgraph_edge_ids_user_demand::Dict{Int, Int} source_edge_mapping::Dict{Int, Int} graph_allocation::DiGraph{Int} capacity::SparseMatrixCSC{Float64, Int} - problem::JuMPModel + problem::JuMP.Model Δt_allocation::Float64 end diff --git a/core/test/allocation.jl b/core/test/allocation.jl index 556fb5f71..4228d2372 100644 --- a/core/test/allocation.jl +++ b/core/test/allocation.jl @@ -19,10 +19,10 @@ using PreallocationTools: get_tmp Ribasim.allocate!(p, allocation_model, 0.0) F = JuMP.value.(allocation_model.problem[:F]) - @test F ≈ [4.0, 0.5, 0.0, 4.0, -0.0, 4.5] + @test F ≈ [0.0, 4.0, 0.0, 0.0, 0.0, 4.5] allocated = p.user.allocated - @test allocated[1] ≈ [0.0, 0.5] - @test allocated[2] ≈ [4.0, 0.0] + @test allocated[1] ≈ [4.0, 4.0] + @test allocated[2] ≈ [0.0, 0.0] @test allocated[3] ≈ [0.0, 0.0] end diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index 9db6110a5..3f6b6217e 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -4,7 +4,7 @@ title: "Allocation" Allocation is the process of assigning an allocated abstraction flow rate to user nodes in the model based on information about sources, user demands over various priorities, constraints introduced by nodes, local water availability and graph topology. The allocation procedure implemented in Ribasim is heavily inspired by the [maximum flow problem](https://en.wikipedia.org/wiki/Maximum_flow_problem). -The allocation problem is solved per subnetwork of the Ribasim model. The subnetwork is used to formulate an optimization problem with the [JuMP](https://jump.dev/JuMP.jl/stable/) package, which is solved using the [HiGHS solver](https://highs.dev/). See also the example of solving the maximum flow problem with `JuMP.jl` [here](https://jump.dev/JuMP.jl/stable/tutorials/linear/network_flows/#The-max-flow-problem). +The allocation problem is solved per subnetwork of the Ribasim model, from which a new graph is created called the allocation graph. The allocation graph is used to formulate an optimization problem with the [JuMP](https://jump.dev/JuMP.jl/stable/) package, which is solved using the [HiGHS solver](https://highs.dev/). For more information see also the example of solving the maximum flow problem with `JuMP.jl` [here](https://jump.dev/JuMP.jl/stable/tutorials/linear/network_flows/#The-max-flow-problem). # The allocation problem @@ -14,7 +14,7 @@ The following data of the parameters and state of a Ribasim model are relevant f ### The subnetwork -The allocation problem is solved per subgraph, where a subgraph is given by a subset $S \subset V$ of node ids. Different subgraphs are disjoint from eachother. +The allocation problem is solved per allocation graph, which is derived from a subnetwork given by a subset $S \subset V$ of node ids. Different subnetworks are disjoint from eachother. ### Source flows @@ -22,7 +22,7 @@ Sources are indicated by a set of edges in the subnetwork $$ E_S^\text{source} \subset \left(S \times S\right) \cap E. $$ -That is, if $(i,j) \in E_S^\text{source}$, then $Q_{ij}$ is treated as a source flow in the allocation problem. +That is, if $(i,j) \in E_S^\text{source}$, then $Q_{ij}$ (see the [formal model description](equations.qmd#formal-model-description)) is treated as a source flow in the allocation problem. ### User demands @@ -42,9 +42,9 @@ $$ \phi_i(t), \quad \forall i \in B_S. $$ -Secondly, there is the available water in each basin above the minimum level $l_{\min,i}$ +Secondly, there is the available water in each basin above the minimum level $l_{\min,i}$ corresponding to a minimum storage $s_{\min,i}$: $$ - u_i(t)-S(l_{\min,i}), \quad \forall i \in B_S. + u_i(t)-s_{\min,i}, \quad \forall i \in B_S. $$ Note that this value can be negative, which we interpret as a demand from the basin. @@ -54,7 +54,7 @@ Nodes in the Ribasim model that have a `max_flow_rate`, i.e. pumps and outlets, ### Fractional flows and user return flows -Both fractional flow nodes and user nodes dictate proportional relationships between flows over edges in the subnetwork. Users have a return factor $r_i, i \in U_S$. +Both fractional flow nodes and user nodes dictate proportional relationships between flows over edges in the subnetwork. Users have a return factor $0 \le r_i \le 1, i \in U_S$. ## The allocation optimization problem @@ -66,105 +66,88 @@ A new graph is created from the subnetwork, which we call the allocation graph. - Edges $\hat{E_S}$, where the edges in the allocation graph are given by one or more edges in the subnetwork, where those edges connect nodes in the subnetwork that have an equivalent in the allocation graph. The direction of the edges in the allocation graph is given by the direction constraints in the subnetwork. For notational convenience, we use the notation -$$ - \begin{align} - \hat{V}^{\text{out}}_S(\hat{i}) = \left\{\hat{j} \in \hat{V}_S : (\hat{i},\hat{j}) \in \hat{E}_S\right\} \\ - \hat{V}^{\text{in}}_S(\hat{j}) = \left\{\hat{i} \in \hat{V}_S : (\hat{i},\hat{j}) \in \hat{E}_S\right\} - \end{align} -$$ + +\begin{align} + \hat{V}^{\text{out}}_S(\hat{i}) = \left\{\hat{j} \in \hat{V}_S : (\hat{i},\hat{j}) \in \hat{E}_S\right\} \\ + \hat{V}^{\text{in}}_S(\hat{j}) = \left\{\hat{i} \in \hat{V}_S : (\hat{i},\hat{j}) \in \hat{E}_S\right\} +\end{align} + for the set of in-neighbors and out-neighbors of a node in the allocation graph respectively. ### The allocation graph capacities The capacities of the edges of the allocation graph are collected in the sparse capacity matrix $\hat{C}_S \in \overline{\mathbb{R}}_{\ge 0}^{\hat{n}\times\hat{n}}$ where $\hat{n}$ is the number of nodes in the allocation graph. The capacities can be infinite. -The capacities are determined in 3 different ways: +The capacities are determined in 4 different ways: - If an edge does not exist, i.e. $(\hat{i},\hat{j}) \notin \hat{E}$ for certain $1 \le \hat{i},\hat{j}\le \hat{n}$, then $(\hat{C}_S)_{\hat{i},\hat{j}} = 0$; - The capacity of the edge $\hat{e} \in \hat{E_S}$ is given by the smallest `max_flow_rate` of the nodes along the equivalent edges in the subnetwork. If there are no nodes with a `max_flow_rate`, the edge capacity is infinite; - If the edge is a source, the capacity of the edge is given by the flow rate of that source. +- If the edge ends in a user node, the edge capacity is given by the demand of that user, see also [the next section](allocation.qmd#sec-solving-allocation). ### The optimization variables -There are several types of variables whose value has to be determined to solve the allocation problem: +There are 2 types of variables whose value has to be determined to solve the allocation problem: - The flows $F \in \mathbb{R}_{\ge 0}^{\hat{n}\times\hat{n}}$ over the edges in the allocation graph; -- The allocations to the users -$$ - A^\text{user}_{\hat{i},p} \ge 0, \quad \forall \hat{i} \in \hat{U}_S, \forall p \in \{1,2,\ldots, p_\max\}, -$$ -where $\hat{U}_S = m_S(U_S) \subset \hat{V}_S$ is the set of user node ids in the allocation graph; - - The allocations to the basins $$ A^\text{basin}_{\hat{i}} \ge 0, \quad \hat{B}_S, $$ where $\hat{B} = m_S(B_S) \subset \hat{V}_S$ is the set of basin node ids in the allocation graph. +:::{.callout-note} +Currently the basin allocations are not taken into account in the implementation. +::: + ### The optimization objective -The goal of allocation is to maximize the flow to the users. However, basins can also demand water if their level is below the minimum abstraction level, which we give a higher priority than user demands. Therefore, we use the following optimization objective: +The goal of allocation is to maximize the flow to the users. Therefore, we use the following optimization objective: $$ - \max \sum_{\hat{i} \in \hat{B}_S} A^\text{basin}_{\hat{i}} + \sum_{\hat{i}\in \hat{U}_S} \sum_{p=1}^{p_\max} 2^{-p} A^\text{user}_{\hat{i},p}. + \max \sum_{(\hat{i},\hat{j})\in \hat{E}_S\;:\; \hat{i}\in \hat{U}_S} F_{\hat{i}\hat{j}} $$ {#eq-objective} -This is a linear combination of all allocations, where allocations to basins get a weight of $1$ and allocations to users get a weight of $2^{-p}$ where $p$ is the priority. +This is a linear combination of the allocations to the users, where all allocations currently get a weight of $1$. -### The optimization variable constraints +:::{.callout-note} +This optimization objective will probably be modified in the future, to take things into account like: -- Source flows: for the source edges we have that -$$ -F_{\hat{i}\hat{j}} \le Q_{ij} \quad \forall (i,j) \in E_S^\text{source}. -$$ -Note that we do not require equality here; not all source flow has to be used. +- Fair distribution in the case of water scarcity; +- An allocation graph-wide preference ordering over sources. +::: + +### The optimization variable constraints - Flow conservation: For the basins in the allocation graph we have that $$ - \sum_{\hat{j}=1}^{\hat{n}} F_{\hat{k}\hat{j}} \le \sum_{\hat{i}=1}^{\hat{n}} F_{\hat{i}\hat{k}} + \Phi_{\hat{k}}, \quad \forall\hat{k} \in \hat{B}_S. + \sum_{\hat{j}=1}^{\hat{n}} F_{\hat{k}\hat{j}} \le \sum_{\hat{i}=1}^{\hat{n}} F_{\hat{i}\hat{k}}, \quad \forall\hat{k} \in \hat{B}_S. $$ {#eq-flowconservationconstraint} Note that we do not require equality here; in the allocation we do not mind that excess flow is 'forgotten' if it cannot contribute to the allocation to the users. -$\Phi_{\hat{k}}$ is the local water supply of the basins: -$$ - \Phi_{\hat{k}} = \max\left(\phi_k(t) + \frac{u_k(t)-S(l_{\min,k})}{\Delta t_\text{alloc}}, 0.0 \right). -$$ {#eq-basinsourceflow} -Here the first term denotes the vertical fluxes and the second term the flow that can be supplied by the water in the basin above its minimum level, where $\Delta t_\text{alloc}$ is the allocation solve timestep. - - Capacity: the flows over the edges are positive and bounded by the edge capacity: $$ F_{\hat{i}\hat{j}} \le \left(\hat{C}_S\right)_{\hat{i}\hat{j}}, \quad \forall(\hat{i},\hat{j}) \in \hat{E}_S. $$ {#eq-capacityconstraint} +By the definition of $\hat{C}_S$ this also includes the source flows. - User outflow: The outflow of the user is dictated by the inflow and the return factor: $$ -\begin{align} - F_{\hat{i}\hat{k}} = r_k \cdot F_{\hat{k}\hat{j}}\\ - \quad \forall\hat{k} \in \hat{U}_s, \\ - \hat{V}^{\text{in}}_S(\hat{k}) = \{\hat{i}\},\\ + F_{\hat{i}\hat{k}} = r_k \cdot F_{\hat{k}\hat{j}} \quad + \quad \forall\hat{k} \in \hat{U}_s, \quad + \hat{V}^{\text{in}}_S(\hat{k}) = \{\hat{i}\},\; \hat{V}^{\text{out}}_S(\hat{k}) = \{\hat{j}\}. -\end{align} $$ {#eq-returnflowconstraint} Here we use that each user node in the allocation graph has a unique in-edge and out-edge. -- User allocation: The flow over the edge to the user is equal to the sum of the allocations to the user: -$$ - F_{\hat{i}\hat{k}} = \sum_{p=1}^{p_\max} A^\text{user}_{\hat{k},p}, \quad \forall \hat{k} \in \hat{U}_S, \hat{V}^{\text{out}}_s(\hat{k}) = \{\hat{i}\}. -$$ {#eq-userallocationconstraint} -Here we use that each user has a unique out-edge. -- User demand: what is allocated to the user is bounded above by the user demand: -$$ - A_{\hat{i},p}^\text{user} \leq d_i^p(t) \quad \forall\hat{i} \in \hat{U}_S, \; p = 1,\ldots,p_\max. -$$ -- Basin allocation: If the flow supplied by a basin (as determined in @eq-basinsourceflow) is negative, it is a demand: -$$ -A^\text{basin}_{\hat{i}} = \max\left(-\left(\phi_i(t) + \frac{u_i(t)-S(l_{\min,k})}{\Delta t_\text{alloc}}\right), 0.0 \right), \quad \forall \hat{i} \in \hat{B}_S. -$$ {#eq-basinallocationconstraint} +- User demand: user demand constraints are discussed in [the next section](allocation.qmd#sec-solving-allocation). - Fractinal flow: Let $\hat{L}_S \subset \hat{V}_S$ be the set of nodes in the max flow graph with fractional flow outneighbors, and $f_j$ the flow fraction associated with fractional flow node $j \in V_S$. Then $$ -\begin{align} - F_{\hat{i}\hat{j}} = f_j \sum_{k\in \hat{V}^\text{in}_S(\hat{i})} F_{\hat{k}\hat{i}} \\ - \forall \hat{i} \in \hat{L}_S, \\ + F_{\hat{i}\hat{j}} \le f_j \sum_{k\in \hat{V}^\text{in}_S(\hat{i})} F_{\hat{k}\hat{i}} \qquad + \forall \hat{i} \in \hat{L}_S, \; \hat{j} \in \hat{V}_S^\text{out}(\hat{i}). -\end{align} $$ {#eq-fractionalflowconstraint} - Flow sign: Furthermore there are the non-negativity constraints for the flows and allocations, see [The optimization variables](allocation.qmd#the-optimization-variables). +:::{.callout-note} +Currently the fractional flow constraints are not taken into account in the implementation. +::: + ## Final notes on the allocation problem ### Users using their own return flow @@ -172,52 +155,31 @@ $$ {#eq-fractionalflowconstraint} If not explicitly avoided, users can use their own return flow in this allocation problem formulation. Therefore, return flow of users is only taken into account by allocation if that return flow is downstream of the user where it comes from. That is, if there is no path in the directed allocation graph from the user outflow node back to the user. -# Solving the allocation problem - -The text below shows a representation generated by `JuMP.jl` of an optimization as described in the previous section. - -``` -Max A_basin[2] + A_basin[3] + A_basin[5] + 0.5 A_user_4[1] + 0.25 A_user_4[2] + 0.125 A_user_4[3] + 0.5 A_user_6[1] + 0.25 A_user_6[2] + 0.125 A_user_6[3] + 0.5 A_user_1[1] + 0.25 A_user_1[2] + 0.125 A_user_1[3] -Subject to - allocation_sum[1] : -F[1] + A_user_1[1] + A_user_1[2] + A_user_1[3] == 0 - allocation_sum[4] : -F[3] + A_user_4[1] + A_user_4[2] + A_user_4[3] == 0 - allocation_sum[6] : -F[5] + A_user_6[1] + A_user_6[2] + A_user_6[3] == 0 - A_user_1[1] >= 0 - A_user_1[2] >= 0 - A_user_1[3] >= 0 - A_user_4[1] >= 0 - A_user_4[2] >= 0 - A_user_4[3] >= 0 - A_user_6[1] >= 0 - A_user_6[2] >= 0 - A_user_6[3] >= 0 - demand_user_1[1] : A_user_1[1] <= 4 - demand_user_1[2] : A_user_1[2] <= 0 - demand_user_1[3] : A_user_1[3] <= 0 - demand_user_4[1] : A_user_4[1] <= 0 - demand_user_4[2] : A_user_4[2] <= 2 - demand_user_4[3] : A_user_4[3] <= 0 - demand_user_6[1] : A_user_6[1] <= 0 - demand_user_6[2] : A_user_6[2] <= 1 - demand_user_6[3] : A_user_6[3] <= 0 - basin_allocation[2] : A_basin[2] <= 0 - basin_allocation[3] : A_basin[3] <= 0 - basin_allocation[5] : A_basin[5] <= 0 - capacity[2] : F[2] <= 3 - capacity[4] : F[4] <= 4 - source[7] : F[6] <= 4.5 - flow_conservation[2] : F[1] - F[2] <= 0 - flow_conservation[3] : F[2] + F[3] - F[4] <= 0 - flow_conservation[5] : F[4] + F[5] - F[6] <= 0 - F[1] >= 0 - F[2] >= 0 - F[3] >= 0 - F[4] >= 0 - F[5] >= 0 - F[6] >= 0 - A_basin[2] >= 0 - A_basin[3] >= 0 - A_basin[5] >= 0 -``` - -A more detailed explanation of this will follow in the future. +# Solving the allocation problem {#sec-solving-allocation} + +The allocation problem for an allocation graph at time $t$ is solved per priority, as follows: + +1. Define a capacity matrix with capacities as described above, that will be updated for each priority: +$$ + \hat{C}_S^p \leftarrow \hat{C}_S; +$$ +2. Set the capacities of the edges that end in an user to their priority 1 demands: +$$ + (\hat{C}_S^p)_{\hat{i},\hat{j}} \leftarrow d_j^1(t) \quad\text{ for all } (\hat{i},\hat{j}) \in \hat{U}_S; +$$ +3. Maximize the objective function given the constraints; +4. Subtract the used flows from the edge capacities: +$$ + \hat{C}_S^p \leftarrow \hat{C}_S^p - F; +$$ +5. Repeat steps 2-4 for the remaining priorities up to $p_\max$. + +:::{.callout-note} +In the future there will be another solve before the priority 1 solve, taking the demand/supply from basins into account. +::: + +## Example + +:::{.callout-note} +An example with figures and data will be added here after addition of [allocation output files](https://github.com/Deltares/Ribasim/issues/659). +::: From 40400f144cb970a56b98575db7f240dedec81a22 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Fri, 3 Nov 2023 13:31:34 +0100 Subject: [PATCH 07/32] Work around quarto in a cross-platform way (#734) See https://quarto.org/docs/computations/python.html#installation --- pixi.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pixi.toml b/pixi.toml index d777a8780..5c16275e3 100644 --- a/pixi.toml +++ b/pixi.toml @@ -40,11 +40,11 @@ build-julia-docs = { cmd = "julia --project=docs docs/make.jl", depends_on = [ "instantiate-julia-docs", ] } quartodoc-build = "cd docs && quartodoc build && rm objects.json" -quarto-preview = { cmd = "export QUARTO_PYTHON=$(pwd)/.pixi/env/python.exe && quarto preview docs", depends_on = [ +quarto-preview = { cmd = "quarto preview docs", depends_on = [ "quartodoc-build", ] } quarto-check = { cmd = "quarto check all", depends_on = ["quartodoc-build"] } -quarto-render = { cmd = "export QUARTO_PYTHON=$(pwd)/.pixi/env/python.exe && quarto render docs --to html --execute", depends_on = [ +quarto-render = { cmd = "export QUARTO_PYTHON=python && quarto render docs --to html --execute", depends_on = [ "quartodoc-build", ] } docs = { depends_on = ["build-julia-docs", "quarto-preview"] } From 3f4a15da930c8a9a42216a9e85578b8263d67b06 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Fri, 3 Nov 2023 19:09:01 +0100 Subject: [PATCH 08/32] Fix rendering docs to PDF (#735) I've been fixing some problems with rendering the docs to PDF. You can try it yourself by running: `quarto render docs --to pdf` I've hit a roadblock with the following error which first appears when attempting to render `modflow-demo.qmd`: `Unable to load picture or PDF file 'https://user-images.githubusercontent.com /13662783/187665858-d01fd60f-f3c2-4662-af82-cf8acfbe169b.PNG'.` It seems that [_.. pdfTeX and XeTeX do not include the necessary code to grab an image from an arbitrary location. ..._](https://tex.stackexchange.com/questions/5433/can-i-use-an-image-located-on-the-web-in-a-latex-document) Maybe a workaround is possible with pixi that downloads the necessary files to a local folder? --- docs/core/allocation.qmd | 2 +- docs/core/equations.qmd | 34 +++++++++++++++------------------- docs/core/numerics.qmd | 9 ++++----- 3 files changed, 20 insertions(+), 25 deletions(-) diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index 3f6b6217e..5f3509d89 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -172,7 +172,7 @@ $$ $$ \hat{C}_S^p \leftarrow \hat{C}_S^p - F; $$ -5. Repeat steps 2-4 for the remaining priorities up to $p_\max$. +5. Repeat steps 2-4 for the remaining priorities up to $p_{\max}$. :::{.callout-note} In the future there will be another solve before the priority 1 solve, taking the demand/supply from basins into account. diff --git a/docs/core/equations.qmd b/docs/core/equations.qmd index 4724d68d8..5b1d2e606 100644 --- a/docs/core/equations.qmd +++ b/docs/core/equations.qmd @@ -94,18 +94,16 @@ The presence of division by the basin area means that areas of size zero are not ## The reduction factor {#sec-reduction_factor} At several points in the equations below a *reduction factor* is used. This is a term that makes certain transitions more smooth, for instance when a pump stops providing water when its source basin dries up. The reduction factor is given by -$$ +\begin{align} \phi(x; p) = - \begin{align} - \begin{cases} - 0 &\text{if}\quad x < 0 \\ - -2 \left(\frac{x}{p}\right)^3 + 3\left(\frac{x}{p}\right)^2 &\text{if}\quad 0 \le x \le p \\ - 1 &\text{if}\quad x > p - \end{cases} - \end{align}, -$$ + \begin{cases} + 0 &\text{if}\quad x < 0 \\ + -2 \left(\frac{x}{p}\right)^3 + 3\left(\frac{x}{p}\right)^2 &\text{if}\quad 0 \le x \le p \\ + 1 &\text{if}\quad x > p + \end{cases} +\end{align} -where $p > 0$ is the threshold value which determines the interval $[0,p]$ of the smooth transition between $0$ and $1$, see the plot below. +Here $p > 0$ is the threshold value which determines the interval $[0,p]$ of the smooth transition between $0$ and $1$, see the plot below. ```{python} # | code-fold: true @@ -463,23 +461,21 @@ $$ Q_\text{PID}(t) = K_p e(t) + K_i\int_{t_0}^t e(\tau)\text{d}\tau + K_d \frac{\text{d}e}{\text{d}t}, $$ {#eq-PIDflow} -for given constant parameters $K_p,K_i,K_d$. The pump or outlet can have associated minimum and maximum flow rates $Q_\min, Q_\max$, and so +for given constant parameters $K_p,K_i,K_d$. The pump or outlet can have associated minimum and maximum flow rates $Q_{\min}, Q_{\max}$, and so $$ -Q_\text{pump/outlet} = \text{clip}(\Phi Q_\text{PID}; Q_\min, Q_\max). +Q_\text{pump/outlet} = \text{clip}(\Phi Q_\text{PID}; Q_{\min}, Q_{\max}). $$ Here $u_\text{us}$ is the storage of the basin upstream of the pump or outlet, $\Phi$ is the product of [reduction factors](equations.qmd#sec-reduction_factor) associated with the [pump](equations.qmd#sec-pump) or [outlet](equations.qmd#sec-outlet) and -$$ -\text{clip}(Q; Q_\min, Q_\max) = \begin{align} + \text{clip}(Q; Q_{\min}, Q_{\max}) = \begin{cases} - Q_\min & \text{if} & Q < Q_\min \\ - Q & \text{if} & Q_\min \leq Q \leq Q_\max \\ - Q_\max & \text{if} & Q > Q_\max + Q_{\min} & \text{if} \quad Q < Q_{\min} \\ + Q & \text{if} \quad Q_{\min} \leq Q \leq Q_{\max} \\ + Q_{\max} & \text{if} \quad Q > Q_{\max} \end{cases}. \end{align} -$$ For the integral term we denote $$ @@ -511,7 +507,7 @@ that is, $\hat{f}_\text{PID}$ is the right hand side of the ODE for the controll Using this, solving @eq-PIDflow for $Q_\text{PID}$ yields $$ -Q_\text{pump/outlet} = \text{clip}\left(\phi(u_\text{us})\frac{K_pe + K_iI + K_d \left(\frac{\text{d}\text{SP}}{\text{d}t}-\frac{\hat{f}_\text{PID}}{A(u_\text{PID})}\right)}{1\pm\phi(u_\text{us})\frac{K_d}{A(u_\text{PID})}};Q_\min,Q_\max\right), +Q_\text{pump/outlet} = \text{clip}\left(\phi(u_\text{us})\frac{K_pe + K_iI + K_d \left(\frac{\text{d}\text{SP}}{\text{d}t}-\frac{\hat{f}_\text{PID}}{A(u_\text{PID})}\right)}{1\pm\phi(u_\text{us})\frac{K_d}{A(u_\text{PID})}};Q_{\min},Q_{\max}\right), $$ where the clipping is again done last. Note that to compute this, $\hat{f}_\text{PID}$ has to be known first, meaning that the PID controlled pump/outlet flow rate has to be computed after all other contributions to the PID controlled basin's storage are known. diff --git a/docs/core/numerics.qmd b/docs/core/numerics.qmd index d1e338002..6029eb447 100644 --- a/docs/core/numerics.qmd +++ b/docs/core/numerics.qmd @@ -49,17 +49,16 @@ $$ \mathbf{g}(\mathbf{x}) = \mathbf{w}_n + (t_{n+1}-t_n)\mathbf{f}(\mathbf{x},t_{n+1}) $$ by iterating $\mathbf{g}$ on an initial guess of $\mathbf{w}_{n+1}$; -- Newton-Raphson iterations: approximate $\mathbf{w}_{n+1}$ as a root of the function +- Newton iterations: approximate $\mathbf{w}_{n+1}$ as a root of the function $$ \mathbf{h}(\mathbf{x}) = \mathbf{w}_n + (t_{n+1}-t_n)\mathbf{f}(\mathbf{x},t_{n+1}) - \mathbf{x}, $$ by iteratively finding the root of its linearized form: -$$ + \begin{align} \mathbf{0} =& \mathbf{h}(\mathbf{w}_{n+1}^k) + \mathbf{J}(\mathbf{h})(\mathbf{w}_{n+1}^k)(\mathbf{w}_{n+1}^{k+1}-\mathbf{w}_{n+1}^k) \\ =& \mathbf{w}_n + (t_{n+1}-t_n)\mathbf{f}(\mathbf{w}_{n+1}^k,t_{n+1}) - \mathbf{w}_{n+1}^k \\ +&\left[(t_{n+1}-t_n)\mathbf{J}(\mathbf{f})(\mathbf{w}_{n+1}^k)-\mathbf{I}\right](\mathbf{w}_{n+1}^{k+1}-\mathbf{w}_{n+1}^k). \end{align} -$$ {#eq-newtoniter} Note that this thus requires an evaluation of the Jacobian of $\mathbf{f}$ and solving a linear system per iteration. # The advantage of implicit methods @@ -67,7 +66,7 @@ Note that this thus requires an evaluation of the Jacobian of $\mathbf{f}$ and s The implicit method @eq-eulerbackward is a coupled system of equations for $\mathbf{w}_{n+1}$, while the explicit @eq-eulerforward is fully decoupled. This means in general that in a time integration step with an implicit method the basins communicate information with eachother, while in an explicit method this does not happen. A consequence of this is that local events (e.g. a pump turns on) propagate slowly trough the model using an explicit method but quickly using an implicit method, making implicit methods more stable. # Jacobian computations -The iterations @eq-newtoniter require an evaluation of the Jacobian of $\mathbf{f}$. The Jacobian of `water_balance!` is discussed [here](equations.qmd#the-jacobian). +The Newton iterations above require an evaluation of the Jacobian of $\mathbf{f}$. The Jacobian of `water_balance!` is discussed [here](equations.qmd#the-jacobian). There are several ways to compute the Jacobian: @@ -77,7 +76,7 @@ There are several ways to compute the Jacobian: # Continuity considerations -The convergence of the Newton-Raphson method can be [proven](https://en.wikipedia.org/wiki/Newton%27s_method#Proof_of_quadratic_convergence_for_Newton's_iterative_method) given certain properties of $\mathbf{f}$ around the initial guess and root to find. An important aspect is the smoothness of $\mathbf{f}$. The basin profiles and $Q(h)$ relations are given by interpolated data, and thus we have some control over the smoothness of these functions by the choice of interpolation method. This is discussed further below. the Manning resistance is not mentioned here since it is given by an analytical expression. +The convergence of the Newton method can be [proven](https://en.wikipedia.org/wiki/Newton%27s_method#Proof_of_quadratic_convergence_for_Newton's_iterative_method) given certain properties of $\mathbf{f}$ around the initial guess and root to find. An important aspect is the smoothness of $\mathbf{f}$. The basin profiles and $Q(h)$ relations are given by interpolated data, and thus we have some control over the smoothness of these functions by the choice of interpolation method. This is discussed further below. the Manning resistance is not mentioned here since it is given by an analytical expression. Control mechanisms can change parameters of $\mathbf{f}$ discontinuously, leading to discontinuities of $\mathbf{f}$. This however does not yield problems for the time integration methods in `DifferentialEquations.jl`, since the [callback mechanisms](https://docs.sciml.ai/DiffEqDocs/stable/features/callback_functions/) used to change these parameters make the solver take these discontinuities into account. From 1627c0cac233c46074c703ba79d12deb46ebcb1a Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Mon, 6 Nov 2023 12:41:19 +0100 Subject: [PATCH 09/32] docs: Fix `quarto-preview` (#741) I removed that in a different PR, but it seems to be necessary after all --- pixi.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pixi.toml b/pixi.toml index 5c16275e3..ec31fcf59 100644 --- a/pixi.toml +++ b/pixi.toml @@ -40,7 +40,7 @@ build-julia-docs = { cmd = "julia --project=docs docs/make.jl", depends_on = [ "instantiate-julia-docs", ] } quartodoc-build = "cd docs && quartodoc build && rm objects.json" -quarto-preview = { cmd = "quarto preview docs", depends_on = [ +quarto-preview = { cmd = "export QUARTO_PYTHON=python && quarto preview docs", depends_on = [ "quartodoc-build", ] } quarto-check = { cmd = "quarto check all", depends_on = ["quartodoc-build"] } From 6f48d5f28f16e005b6a9f8647aad01cde8c04a3e Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Mon, 6 Nov 2023 13:05:19 +0100 Subject: [PATCH 10/32] Fix rendering docs to PDF (#737) Fix $\TeX$ and figure issues for rendering docs to PDF. The docs are now modified so that all figures are included with HTML syntax in a way that figure numbers and references are preserved. However, I could only make this work in a way that hardcodes the figure numbers, both in the captions and the references. --------- Co-authored-by: Martijn Visser --- docs/couple/modflow.qmd | 8 -------- 1 file changed, 8 deletions(-) diff --git a/docs/couple/modflow.qmd b/docs/couple/modflow.qmd index 12e09dda4..60862bbcc 100644 --- a/docs/couple/modflow.qmd +++ b/docs/couple/modflow.qmd @@ -235,12 +235,10 @@ groundwater response to Ribasim. From Ribasim's perspective, the groundwater head is constant given a timestep, so that: -$$ \begin{align} p = -C \\ q = -C\phi \end{align} -$$ When the head falls below the drainage elevation, the coefficients are 0. @@ -249,22 +247,18 @@ When the head falls below the drainage elevation, the coefficients are 0. From Ribasim's perspective, infiltration is never limited when the head falls below the bottom: -$$ \begin{align} p = -C \\ q = -Cb \end{align} -$$ Otherwise, infiltration and drainage occur with the same equation as for the drainage package: -$$ \begin{align} p = -C \\ q = -C\phi \end{align} -$$ # Assigning MODFLOW water levels @@ -273,12 +267,10 @@ Principally, MODFLOW deals with water levels; Ribasim deals with water volumes. The translation from a water volume to a water level for a single boundary condition is straightforward: -$$ \begin{align} \Delta d = \frac{\Delta V}{A} \\ h = b + d \end{align} -$$ Where $d$ is water depth, $V$ is volume, $A$ is area, $h$ is water level, and $b$ is the bed elevation. From d7cabcf220950e1304eb81b4b54bfead08bad199 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Mon, 6 Nov 2023 14:14:48 +0100 Subject: [PATCH 11/32] set FractionalFlow inflow equal to outflow (#736) Fixes #733 --- core/src/solve.jl | 5 ++++- core/test/run_models.jl | 9 +++++++++ docs/core/usage.qmd | 2 +- 3 files changed, 14 insertions(+), 2 deletions(-) diff --git a/core/src/solve.jl b/core/src/solve.jl index db3c5c957..90d2cc212 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -989,7 +989,10 @@ function formulate_flow!( for (i, id) in enumerate(node_id) downstream_id = only(outneighbors(graph_flow, id)) upstream_id = only(inneighbors(graph_flow, id)) - flow[id, downstream_id] = flow[upstream_id, id] * fraction[i] + # overwrite the inflow such that flow is conserved over the FractionalFlow + outflow = flow[upstream_id, id] * fraction[i] + flow[upstream_id, id] = outflow + flow[id, downstream_id] = outflow end return nothing end diff --git a/core/test/run_models.jl b/core/test/run_models.jl index 69bb3d4ef..893034ae1 100644 --- a/core/test/run_models.jl +++ b/core/test/run_models.jl @@ -55,6 +55,15 @@ end ) # flows are recorded at the end of each period, and are undefined at the start @test unique(table.time) == Ribasim.datetimes(model)[2:end] + + # inflow = outflow over FractionalFlow + t = table.time[1] + @test length(p.fractional_flow.node_id) == 3 + for id in p.fractional_flow.node_id + inflow = only(table.flow[table.to_node_id .== id .&& table.time .== t]) + outflow = only(table.flow[table.from_node_id .== id .&& table.time .== t]) + @test inflow == outflow + end end @testset "basic transient model" begin diff --git a/docs/core/usage.qmd b/docs/core/usage.qmd index a0a5e18bb..b20f4987d 100644 --- a/docs/core/usage.qmd +++ b/docs/core/usage.qmd @@ -506,7 +506,7 @@ node_id | Int | - | sorted active | Bool | - | (optional, default true) length | Float64 | $m$ | positive manning_n | Float64 | $s m^{-\frac{1}{3}}$ | positive -profile_with | Float64 | $m$ | positive +profile_width | Float64 | $m$ | positive profile_slope | Float64 | - | - control_state | String | - | (optional) From d240a58d9f4f0e505eeb6a39c2507170f8653c68 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Mon, 6 Nov 2023 16:21:15 +0100 Subject: [PATCH 12/32] Add compat entries for stdlibs (#739) https://discourse.julialang.org/t/psa-compat-requirements-in-the-general-registry-are-changing/104958 We aren't registered in General yet, but might as well do this already. --- build/create_binaries/Project.toml | 3 +++ build/libribasim/Project.toml | 2 ++ build/ribasim_cli/Project.toml | 3 +++ core/Project.toml | 3 +++ docs/Project.toml | 4 ++++ 5 files changed, 15 insertions(+) diff --git a/build/create_binaries/Project.toml b/build/create_binaries/Project.toml index 275616313..92f8e2f7b 100644 --- a/build/create_binaries/Project.toml +++ b/build/create_binaries/Project.toml @@ -6,6 +6,9 @@ TOML = "fa267f1f-6049-4f14-aa54-33bafae1ed76" TimeZones = "f269a46b-ccf7-5d73-abea-4c690281aa53" [compat] +Artifacts = "1" +LibGit2 = "1" PackageCompiler = "2" +TOML = "1" TimeZones = "=1.13.0" julia = "1.9" diff --git a/build/libribasim/Project.toml b/build/libribasim/Project.toml index 927ef3242..2aa73408c 100644 --- a/build/libribasim/Project.toml +++ b/build/libribasim/Project.toml @@ -11,4 +11,6 @@ TOML = "fa267f1f-6049-4f14-aa54-33bafae1ed76" [compat] BasicModelInterface = "0.1" +Dates = "1" +TOML = "1" julia = "1.9" diff --git a/build/ribasim_cli/Project.toml b/build/ribasim_cli/Project.toml index 0b70d2974..ccdb443aa 100644 --- a/build/ribasim_cli/Project.toml +++ b/build/ribasim_cli/Project.toml @@ -12,4 +12,7 @@ TOML = "fa267f1f-6049-4f14-aa54-33bafae1ed76" TerminalLoggers = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" [compat] +Dates = "1" +Logging = "1" +TOML = "1" julia = "1.9" diff --git a/core/Project.toml b/core/Project.toml index aef1db426..f6870c236 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -48,6 +48,7 @@ DBInterface = "2.4" DataFrames = "1.4" DataInterpolations = "4.4" DataStructures = "0.18" +Dates = "1" Dictionaries = "0.3.25" DiffEqCallbacks = "2.29.1" FiniteDiff = "2.21" @@ -57,11 +58,13 @@ HiGHS = "1.7" IterTools = "1.4" JuMP = "1.15" Legolas = "0.5" +Logging = "1" LoggingExtras = "1" OrdinaryDiffEq = "6.7" PreallocationTools = "0.4" SQLite = "1.5.1" SciMLBase = "1.60, 2" +SparseArrays = "1" StructArrays = "0.6.13" Tables = "1" TerminalLoggers = "0.1.7" diff --git a/docs/Project.toml b/docs/Project.toml index fc0bafbf8..f94700499 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -6,5 +6,9 @@ JSON3 = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" [compat] +Documenter = "0.27" +DocumenterMarkdown = "0.2" +InteractiveUtils = "1" JSON3 = "1.12" +OrderedCollections = "1.6" julia = "1.9" From fda99d3d8ac8a8d80267a3440e65e1c1302b72e0 Mon Sep 17 00:00:00 2001 From: deltamarnix <150045289+deltamarnix@users.noreply.github.com> Date: Mon, 6 Nov 2023 19:28:16 +0100 Subject: [PATCH 13/32] Fix test-ribasim-core by adding `using Pkg;` (#742) Otherwise you would receive an error during `pixi run test-ribasim-core` --- pixi.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pixi.toml b/pixi.toml index ec31fcf59..4ac7b151b 100644 --- a/pixi.toml +++ b/pixi.toml @@ -73,7 +73,7 @@ build = { depends_on = ["build-ribasim-cli", "build-libribasim"] } test-ribasim-python = "pytest --numprocesses=auto python/ribasim/tests" test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=report.xml python/ribasim_api/tests" test-ribasim-cli = "pytest --numprocesses=auto --basetemp=build/ribasim_cli/tests/temp --junitxml=report.xml build/ribasim_cli/tests" -test-ribasim-core = { cmd = "julia --project=core --eval 'Pkg.test()'", depends_on = [ +test-ribasim-core = { cmd = "julia --project=core --eval 'using Pkg; Pkg.test()'", depends_on = [ "instantiate-julia-core", "generate-testmodels", ] } From 045d9c7b60fa36a0a7a0b7fff7b06a59cfe30c12 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Tue, 7 Nov 2023 11:38:39 +0100 Subject: [PATCH 14/32] Add installation instructions for `ribasim_api` (#749) Seems like PyPI changes `_` to `-` :( --- python/ribasim_api/README.md | 23 ++++++++++++++++++++++ python/ribasim_api/ribasim_api/__init__.py | 2 +- 2 files changed, 24 insertions(+), 1 deletion(-) create mode 100644 python/ribasim_api/README.md diff --git a/python/ribasim_api/README.md b/python/ribasim_api/README.md new file mode 100644 index 000000000..fd6c07199 --- /dev/null +++ b/python/ribasim_api/README.md @@ -0,0 +1,23 @@ +# Ribasim API + +`ribasim_api` is an extension to [xmipy](https://pypi.org/project/xmipy/) for the Ribasim API. + +The `ribasim_api` can be used to access functionality in the eXtended Model Interface (XMI) wrapper (XmiWrapper) +and additional functionality specific to the Ribasim API. + + +`ribasim_api` can be installed by running + +``` +pip install ribasim-api +``` + +or + +``` +conda install -c conda-forge ribasim-api +``` + +# Contributing + +For the developer docs please have a look at https://deltares.github.io/Ribasim/python/developer.html diff --git a/python/ribasim_api/ribasim_api/__init__.py b/python/ribasim_api/ribasim_api/__init__.py index 5c8b7720c..9d4736142 100644 --- a/python/ribasim_api/ribasim_api/__init__.py +++ b/python/ribasim_api/ribasim_api/__init__.py @@ -1,4 +1,4 @@ -__version__ = "0.3.0" +__version__ = "0.4.0" from ribasim_api.ribasim_api import RibasimApi From ca9fc6f347b7e84121f422fc290f1f3b571579c3 Mon Sep 17 00:00:00 2001 From: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> Date: Tue, 7 Nov 2023 13:04:16 +0100 Subject: [PATCH 15/32] Streamline release process to PyPI (#750) - Add pixi tasks - Update docs --- docs/contribute/python.qmd | 27 --------------------------- docs/contribute/release.qmd | 11 ++++++++++- pixi.toml | 13 +++++++++++++ 3 files changed, 23 insertions(+), 28 deletions(-) diff --git a/docs/contribute/python.qmd b/docs/contribute/python.qmd index 2a3abb1c5..6aa4ddb51 100644 --- a/docs/contribute/python.qmd +++ b/docs/contribute/python.qmd @@ -45,33 +45,6 @@ If the example models change, re-run this script. 2. Copy `.vscode/settings_template.json` into `.vscode/settings.json` -## How to publish to PyPI {#sec-pypi} - -1) Update `__version__` in `ribasim/__init__.py` - -2) Open a terminal and run `cd python/ribasim` - -3) Activate the ribasim environment with `conda activate ribasim` - -4) If present remove dist folder - -5) Re-create the wheels: -``` -python -m build -``` - -6) Check the package files: -``` -twine check dist/* -``` - -7) Make a new commit with the updated version number, and push to remote - -8) Re-upload the new files: -``` -twine upload dist/* -``` - ## Linting To run our linting suite locally, execute: diff --git a/docs/contribute/release.qmd b/docs/contribute/release.qmd index 0d8a7fc68..acd1c6c64 100644 --- a/docs/contribute/release.qmd +++ b/docs/contribute/release.qmd @@ -54,7 +54,16 @@ All changes ## Release Ribasim Python to PyPI -To be able to do `pip install ribasim`, Ribasim Python needs to be released on the Python Package Index, see [these instructions](python.qmd#sec-pypi) +To be able to install packages with `pip`, they need to be released on the Python Package Index (PyPI). +In order to publish Ribasim Python or Ribasim API follow the following steps: + +1) Update `__version__` in `__init__.py` + +2) Open a terminal and run `pixi run build-ribasim-python-wheel` or `pixi run build-ribasim-api-wheel` + +3) Make a new commit with the updated version number, and push to remote + +4) Publish on PyPI with `pixi run publish-ribasim-python` or `pixi run publish-ribasim-api` ## Wait for TeamCity to build the new release {#sec-teamcity} diff --git a/pixi.toml b/pixi.toml index 4ac7b151b..46afcf750 100644 --- a/pixi.toml +++ b/pixi.toml @@ -87,6 +87,19 @@ generate-python = """\ datamodel-codegen --use-title-as-name --use-double-quotes --disable-timestamp --use-default --strict-nullable --input-file-type=jsonschema --input docs/schema/root.schema.json --output python/ribasim/ribasim/models.py && \ datamodel-codegen --use-title-as-name --use-double-quotes --disable-timestamp --use-default --strict-nullable --input-file-type=jsonschema --input docs/schema/Config.schema.json --output python/ribasim/ribasim/config.py""" codegen = { depends_on = ["generate-schema", "generate-python", "lint"] } +# Publish +build-ribasim-python-wheel = { cmd = "rm --recursive --force dist && python -m build && twine check dist/*", cwd = "python/ribasim" } +build-ribasim-api-wheel = { cmd = "rm --recursive --force dist && python -m build && twine check dist/*", cwd = "python/ribasim_api" } +build-wheels = { depends_on = [ + "build-ribasim-python-wheel", + "build-ribasim-api-wheel", +] } +publish-ribasim-python = { cmd = "twine upload dist/*", cwd = "python/ribasim", depends_on = [ + "build-ribasim-python-wheel", +] } +publish-ribasim-api = { cmd = "twine upload dist/*", cwd = "python/ribasim_api", depends_on = [ + "build-ribasim-api-wheel", +] } [dependencies] build = "*" From 0cba3d6d3e99763073ff9ae5997df4b041de12d7 Mon Sep 17 00:00:00 2001 From: deltamarnix <150045289+deltamarnix@users.noreply.github.com> Date: Tue, 7 Nov 2023 16:18:55 +0100 Subject: [PATCH 16/32] Add quarto and toml as vs code plugin recommends (#752) These plugins are used for syntax highlighting --- .vscode/extensions.json | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.vscode/extensions.json b/.vscode/extensions.json index fb27e6a36..99d6ab42c 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -4,6 +4,8 @@ "ms-python.python", "ms-python.mypy-type-checker", "charliermarsh.ruff", - "njpwerner.autodocstring" + "njpwerner.autodocstring", + "quarto.quarto", + "tamasfe.even-better-toml" ] } From f1ba4b2426512100dcdcb8730e1f69cebeb507ed Mon Sep 17 00:00:00 2001 From: hofer_jn Date: Wed, 8 Nov 2023 10:51:15 +0100 Subject: [PATCH 17/32] TeamCity change in 'Ribasim / Ribasim' project: runners of 'Build libribasim - Windows' build configuration were updated --- .../buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml b/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml index 2ff54e399..0f978d6ab 100644 --- a/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml +++ b/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml @@ -27,7 +27,7 @@ - From a673b6a3c1cfaa13e5163fdd6858372fe43aea88 Mon Sep 17 00:00:00 2001 From: hofer_jn Date: Wed, 8 Nov 2023 10:51:43 +0100 Subject: [PATCH 18/32] TeamCity change in 'Ribasim / Ribasim' project: runners of 'Build ribasim_cli - Windows' build configuration were updated --- .teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml b/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml index 8f004851d..db8d7c89a 100644 --- a/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml +++ b/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml @@ -23,7 +23,7 @@ - From 1827d5c488096ab7ae1e1afe58339ea0800e65b5 Mon Sep 17 00:00:00 2001 From: hofer_jn Date: Wed, 8 Nov 2023 11:33:30 +0100 Subject: [PATCH 19/32] TeamCity change in 'Ribasim / Ribasim' project: runners of 'Build libribasim - Windows' build configuration were updated --- .../Ribasim_RibasimJl_BuildLibribasimWindows.xml | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml b/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml index 0f978d6ab..7f8817608 100644 --- a/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml +++ b/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml @@ -34,6 +34,14 @@ pixi run build-libribasim]]> + + + + + + + From 6194502e15f5ff3d36fc08a2e4e8f57f779db359 Mon Sep 17 00:00:00 2001 From: hofer_jn Date: Wed, 8 Nov 2023 11:33:41 +0100 Subject: [PATCH 20/32] TeamCity change in 'Ribasim / Ribasim' project: runners of 'Build libribasim - Windows' build configuration were updated --- .../Ribasim_RibasimJl_BuildLibribasimWindows.xml | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml b/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml index 7f8817608..c3026700d 100644 --- a/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml +++ b/.teamcity/Ribasim_Ribasim/buildTypes/Ribasim_RibasimJl_BuildLibribasimWindows.xml @@ -17,6 +17,14 @@ + + + + + + + @@ -34,14 +42,6 @@ pixi run build-libribasim]]> - - - - - - - From 47aa6800a31b5d0926ddd95b348a584b510b1b8b Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Thu, 9 Nov 2023 11:55:04 +0100 Subject: [PATCH 21/32] Share manifests (#740) One frequent reason that `libribasim` and `ribasim_cli` builds break is because we add a dependency to the core, and we forget to resolve the Manifests of `libribasim` and `ribasim_cli`. (e.g. #484). This adds an entry like `manifest = "../Manifest.toml"` to the `core`, `libribasim` and `ribasim_cli` Project.toml, which all point to the new `root` Manifest. With this they still have their own Project, but a shared Manifest. This option exists to make it easier to work with multiple related projects in one monorepo. ~~As a follow-up we could consider also doing~~ We also do this for the remaining two projects, `docs` and `create_binaries`. `create_binaries` doesn't depend on Ribasim, so there is not as much benefit. `docs` does, currently not via Project.toml, but via adding it to the LOAD_PATH. It would be cleaner to also use a shared Manifest there. One thing to check if the unmaintained docs dependencies don't hold back Ribasim dependencies, see #621 (EDIT: they don't). ~~This is on top of #738, but could be separated out if needed.~~ Also simplifies the docs, and has a not-directly-related commit 8403bef7b117ca0b8eadfd52528a4adfe518ada9 that runs CompatHelper for all projects, not just core. For reference, the root project is populated like this: `dev ./core ./docs build/create_binaries build/libribasim build/ribasim_cli`. --- .github/workflows/core_compat_helper.yml | 8 +- .vscode/settings_template.json | 1 - core/Manifest.toml => Manifest.toml | 226 ++- Project.toml | 10 + build/create_binaries/Manifest.toml | 225 --- build/create_binaries/Project.toml | 7 + build/create_binaries/add_metadata.jl | 4 +- build/create_binaries/src/create_binaries.jl | 4 + build/libribasim/Manifest.toml | 1356 ------------------ build/libribasim/Project.toml | 3 +- build/ribasim_cli/Manifest.toml | 1356 ------------------ build/ribasim_cli/Project.toml | 3 +- core/Project.toml | 1 + docs/Manifest.toml | 142 -- docs/Project.toml | 16 + docs/contribute/core.qmd | 19 +- docs/gen_schema.jl | 4 +- docs/make.jl | 2 +- docs/src/docs.jl | 4 + pixi.toml | 19 +- 20 files changed, 231 insertions(+), 3179 deletions(-) rename core/Manifest.toml => Manifest.toml (84%) create mode 100644 Project.toml delete mode 100644 build/create_binaries/Manifest.toml create mode 100644 build/create_binaries/src/create_binaries.jl delete mode 100644 build/libribasim/Manifest.toml delete mode 100644 build/ribasim_cli/Manifest.toml delete mode 100644 docs/Manifest.toml create mode 100644 docs/src/docs.jl diff --git a/.github/workflows/core_compat_helper.yml b/.github/workflows/core_compat_helper.yml index ac35110da..6db7c8918 100644 --- a/.github/workflows/core_compat_helper.yml +++ b/.github/workflows/core_compat_helper.yml @@ -37,7 +37,13 @@ jobs: - name: "Run CompatHelper" run: | import CompatHelper - CompatHelper.main(; subdirs=["core"]) + CompatHelper.main(; subdirs=[ + "core", + "docs", + "build/create_binaries", + "build/libribasim", + "build/ribasim_cli" + ]) shell: julia --color=yes {0} env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/.vscode/settings_template.json b/.vscode/settings_template.json index 852168c6d..bd65da885 100644 --- a/.vscode/settings_template.json +++ b/.vscode/settings_template.json @@ -2,7 +2,6 @@ "[julia]": { "editor.formatOnSave": true }, - "julia.environmentPath": "core", "notebook.formatOnSave.enabled": true, "[python]": { "editor.defaultFormatter": "charliermarsh.ruff", diff --git a/core/Manifest.toml b/Manifest.toml similarity index 84% rename from core/Manifest.toml rename to Manifest.toml index 6dfa5a16b..07619a7ee 100644 --- a/core/Manifest.toml +++ b/Manifest.toml @@ -2,13 +2,18 @@ julia_version = "1.9.3" manifest_format = "2.0" -project_hash = "c63b237aec6a6bf6314284b2b07a94b93a9f0a36" +project_hash = "f38abc22b48e63729fc0df2250576035135df64d" [[deps.ADTypes]] git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" version = "0.2.4" +[[deps.ANSIColoredPrinters]] +git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" +uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" +version = "0.0.1" + [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -36,9 +41,9 @@ version = "0.2.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "16267cf279190ca7c1b30d020758ced95db89cd0" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.5.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -56,12 +61,6 @@ version = "7.4.11" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" - [[deps.Arrow]] deps = ["ArrowTypes", "BitIntegers", "CodecLz4", "CodecZstd", "ConcurrentUtilities", "DataAPI", "Dates", "EnumX", "LoggingExtras", "Mmap", "PooledArrays", "SentinelArrays", "Tables", "TimeZones", "TranscodingStreams", "UUIDs"] git-tree-sha1 = "954666e252835c4cf8819ce4ffaf31073c1b7233" @@ -219,9 +218,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.0" [[deps.Configurations]] deps = ["ExproniconLite", "OrderedCollections", "TOML"] @@ -249,6 +248,11 @@ git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" uuid = "adafc99b-e345-5852-983c-f28acb93d879" version = "0.3.1" +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + [[deps.DBInterface]] git-tree-sha1 = "9b0dc525a052b9269ccc5f7f04d5b3639c65bca5" uuid = "a10d1c49-ce27-4219-8d33-6db1a4562965" @@ -260,10 +264,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.15.0" [[deps.DataInterpolations]] -deps = ["LinearAlgebra", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"] -git-tree-sha1 = "5d8ddbe1e7e539d3c2f6ae34d32a770e722eec07" +deps = ["LinearAlgebra", "PrettyTables", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires"] +git-tree-sha1 = "97b5c6115165fc9f99908cbdd2ea4c0efda0843e" uuid = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" -version = "4.4.0" +version = "4.5.0" [deps.DataInterpolations.extensions] DataInterpolationsChainRulesCoreExt = "ChainRulesCore" @@ -299,14 +303,15 @@ uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.3.25" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "36a590efdbee58b38f903ffc3b378f4a5336bc3f" +deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "de4709e30bd5490435122c4b415b90a812c23fbf" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.134.0" +version = "6.138.1" [deps.DiffEqBase.extensions] + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" - DiffEqBaseEnzymeExt = "Enzyme" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -314,9 +319,9 @@ version = "6.134.0" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" @@ -326,7 +331,6 @@ version = "6.134.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] @@ -371,6 +375,18 @@ git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.3" +[[deps.Documenter]] +deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] +git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67" +uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" +version = "0.27.25" + +[[deps.DocumenterMarkdown]] +deps = ["Documenter"] +git-tree-sha1 = "9af057a98652336e30586d8092fac06f8b28ecdc" +uuid = "997ab1e6-3595-5248-9280-8efb232c3433" +version = "0.2.2" + [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" @@ -383,9 +399,9 @@ version = "1.0.4" [[deps.EnzymeCore]] deps = ["Adapt"] -git-tree-sha1 = "d8701002a745c450c03b890f10d53636d1a8a7ea" +git-tree-sha1 = "ab81396e4e7b61f5590db02fa1c17fae4f16d7ab" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.6.2" +version = "0.6.3" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] @@ -493,6 +509,11 @@ git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" version = "0.5.3" +[[deps.Glob]] +git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" +uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" +version = "1.3.1" + [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" @@ -517,6 +538,12 @@ git-tree-sha1 = "eb8fed28f4994600e29beef49744639d985a04b2" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.16" +[[deps.IOCapture]] +deps = ["Logging", "Random"] +git-tree-sha1 = "d75853a0bdbfb1ac815478bacd89cd27b550ace6" +uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" +version = "0.2.3" + [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" @@ -575,6 +602,12 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" +[[deps.JSON3]] +deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] +git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3" +uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" +version = "1.13.2" + [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "Printf", "SnoopPrecompile", "SparseArrays"] git-tree-sha1 = "25b2fcda4d455b6f93ac753730d741340ba4a4fe" @@ -599,11 +632,16 @@ git-tree-sha1 = "17e462054b42dcdda73e9a9ba0c67754170c88ae" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" version = "0.9.4" +[[deps.LaTeXStrings]] +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" +version = "1.3.1" + [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" +git-tree-sha1 = "62edfee3211981241b57ff1cedf4d74d79519277" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.14" +version = "0.1.15" [[deps.Lazy]] deps = ["MacroTools"] @@ -660,10 +698,10 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "a563cd835c9ed5295c35a7d140e0bf0a514bb10a" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "84bdad5fb1fe03a6637ad413e0e4b7e48ac22be5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.13.0" +version = "2.16.2" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -717,10 +755,10 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "0f5648fbae0d015e3abe5867bca2b362f67a5894" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.165" +version = "0.12.166" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -733,6 +771,12 @@ git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" version = "1.9.4+0" +[[deps.MKL]] +deps = ["Artifacts", "Libdl", "LinearAlgebra", "MKL_jll"] +git-tree-sha1 = "100521a1d2181cb39036ee1a6955d6b9686bb363" +uuid = "33e6dc65-8f57-5167-99aa-e5a354878fb2" +version = "0.6.1" + [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" @@ -756,9 +800,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MathOptInterface]] deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] -git-tree-sha1 = "13b3d40084d04e609e0509730f05215fb2a2fba4" +git-tree-sha1 = "70ea2892b8bfffecc0387ba1a6a21192814f120c" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.21.0" +version = "1.22.0" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] @@ -812,16 +856,18 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "9203b3333c9610664de2e8cbc23cfd726663df7d" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "f400009287afedef175058e64aadf7d41f593fef" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "2.4.0" +version = "2.8.0" [deps.NonlinearSolve.extensions] + NonlinearSolveBandedMatricesExt = "BandedMatrices" NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" [deps.NonlinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" @@ -854,9 +900,15 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" +git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.58.0" +version = "6.58.2" + +[[deps.PackageCompiler]] +deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs"] +git-tree-sha1 = "8040d4fce6697d98c679c5477e5257d39cef7623" +uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d" +version = "2.1.12" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -883,9 +935,9 @@ version = "1.9.2" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" +git-tree-sha1 = "fca25670784a1ae44546bcb17288218310af2778" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.8" +version = "0.7.9" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -923,6 +975,12 @@ git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.2.8" + [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -980,12 +1038,24 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" +[[deps.RelocatableFolders]] +deps = ["SHA", "Scratch"] +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" +uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" +version = "1.0.1" + [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" +[[deps.Ribasim]] +deps = ["Arrow", "BasicModelInterface", "CodecLz4", "CodecZstd", "ComponentArrays", "Configurations", "DBInterface", "DataInterpolations", "DataStructures", "Dates", "Dictionaries", "DiffEqCallbacks", "FiniteDiff", "ForwardDiff", "Graphs", "HiGHS", "IterTools", "JuMP", "Legolas", "Logging", "LoggingExtras", "OrdinaryDiffEq", "PreallocationTools", "SQLite", "SciMLBase", "SparseArrays", "StructArrays", "Tables", "TerminalLoggers", "TimeZones", "TimerOutputs", "TranscodingStreams"] +path = "core" +uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" +version = "0.4.0" + [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2" @@ -1003,9 +1073,9 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" +git-tree-sha1 = "3aac6d68c5e57449f5b9b865c9ba50ac2970c4cf" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.39" +version = "0.6.42" [[deps.SQLite]] deps = ["DBInterface", "Random", "SQLite_jll", "Serialization", "Tables", "WeakRefStrings"] @@ -1020,12 +1090,13 @@ uuid = "76ed43ae-9a5d-5a62-8c75-30186b810ce8" version = "3.43.0+0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "1c2a4e245744dd76b2eb677d3535ffad16d8b989" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] +git-tree-sha1 = "8d1bb6b4c0aa7c1bcd3bcd81e2b8c3b4f4b0733e" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.5.0" +version = "2.7.3" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" @@ -1033,6 +1104,7 @@ version = "2.5.0" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" @@ -1047,21 +1119,21 @@ version = "0.1.9" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.7" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1077,10 +1149,10 @@ deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" [[deps.SimpleNonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2" +deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "69b1a53374dd14d7c165d98cb646aeb5f36f8d07" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.23" +version = "0.1.25" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveNNlibExt = "NNlib" @@ -1114,9 +1186,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" +git-tree-sha1 = "e162b74fd1ce6d371ff5c584b53e34538edb9212" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.8.0" +version = "2.11.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -1193,12 +1265,24 @@ git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" version = "0.4.17" +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + [[deps.StructArrays]] deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" version = "0.6.16" +[[deps.StructTypes]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" +uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" +version = "1.10.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -1282,9 +1366,9 @@ version = "0.9.13" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" +git-tree-sha1 = "fadebab77bf3ae041f77346dd1c290173da5a443" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" +version = "0.1.20" [[deps.Tricks]] git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" @@ -1338,17 +1422,29 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.5+0" -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "9d749cd449fb448aeca4feee9a2f4186dbb5d184" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.4" +[[deps.create_binaries]] +deps = ["Artifacts", "LibGit2", "PackageCompiler", "TOML", "TimeZones"] +path = "build/create_binaries" +uuid = "3cfb6a46-05f0-43df-bb16-bf763deb14b4" +version = "0.1.0" + +[[deps.docs]] +deps = ["Configurations", "Dates", "Documenter", "DocumenterMarkdown", "InteractiveUtils", "JSON3", "Legolas", "Logging", "OrderedCollections", "Ribasim"] +path = "docs" +uuid = "8daea9ca-fc6c-4731-aa85-717fa0b706bc" +version = "0.1.0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+0" +[[deps.libribasim]] +deps = ["BasicModelInterface", "Dates", "Ribasim", "TOML"] +path = "build/libribasim" +uuid = "f319f290-633d-4573-adfe-d6d5548b6388" +version = "0.1.0" + [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" @@ -1358,3 +1454,9 @@ version = "1.48.0+0" deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+0" + +[[deps.ribasim_cli]] +deps = ["Dates", "Logging", "Ribasim", "SciMLBase", "TOML", "TerminalLoggers"] +path = "build/ribasim_cli" +uuid = "e45c999e-e944-4589-a8e6-7d0b7a60140a" +version = "0.1.0" diff --git a/Project.toml b/Project.toml new file mode 100644 index 000000000..7f78b211f --- /dev/null +++ b/Project.toml @@ -0,0 +1,10 @@ +name = "root" +authors = ["Deltares and contributors "] +description = "Meta-project used to share the Manifest of Ribasim and its dependents" + +[deps] +Ribasim = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" +create_binaries = "3cfb6a46-05f0-43df-bb16-bf763deb14b4" +docs = "8daea9ca-fc6c-4731-aa85-717fa0b706bc" +libribasim = "f319f290-633d-4573-adfe-d6d5548b6388" +ribasim_cli = "e45c999e-e944-4589-a8e6-7d0b7a60140a" diff --git a/build/create_binaries/Manifest.toml b/build/create_binaries/Manifest.toml deleted file mode 100644 index 737ac860a..000000000 --- a/build/create_binaries/Manifest.toml +++ /dev/null @@ -1,225 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "71b2262fd2a2bd6f9c0ade48d4062e051c3f39eb" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" - - [deps.Compat.weakdeps] - Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" - LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.ExprTools]] -git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" -uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.10" - -[[deps.FileWatching]] -uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" - -[[deps.Glob]] -git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" -uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" -version = "1.3.1" - -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.LazyArtifacts]] -deps = ["Artifacts", "Pkg"] -uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" - -[[deps.LibCURL]] -deps = ["LibCURL_jll", "MozillaCACerts_jll"] -uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" - -[[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] -uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "MbedTLS_jll"] -uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" - -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.MbedTLS_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" - -[[deps.Mocking]] -deps = ["Compat", "ExprTools"] -git-tree-sha1 = "4cc0c5a83933648b615c36c2b956d94fda70641e" -uuid = "78c3b35d-d492-501b-9361-3d52fe80e533" -version = "0.7.7" - -[[deps.MozillaCACerts_jll]] -uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.PackageCompiler]] -deps = ["Artifacts", "Glob", "LazyArtifacts", "Libdl", "Pkg", "Printf", "RelocatableFolders", "TOML", "UUIDs"] -git-tree-sha1 = "d24f0920777c64c0265e9725eb4a3ec450bc36dd" -uuid = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d" -version = "2.1.10" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] -uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.RelocatableFolders]] -deps = ["SHA", "Scratch"] -git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" -uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.1" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.Scratch]] -deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" -uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - - [deps.TimeZones.weakdeps] - RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/build/create_binaries/Project.toml b/build/create_binaries/Project.toml index 92f8e2f7b..f37146fb7 100644 --- a/build/create_binaries/Project.toml +++ b/build/create_binaries/Project.toml @@ -1,3 +1,10 @@ +name = "create_binaries" +uuid = "3cfb6a46-05f0-43df-bb16-bf763deb14b4" +authors = ["Deltares and contributors "] +description = "Build Ribasim binaries with PackageCompiler" +manifest = "../../Manifest.toml" +version = "0.1.0" + [deps] Artifacts = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" LibGit2 = "76f85450-5226-5b5a-8eaa-529ad045b433" diff --git a/build/create_binaries/add_metadata.jl b/build/create_binaries/add_metadata.jl index 3eb3bad89..27f3585ce 100644 --- a/build/create_binaries/add_metadata.jl +++ b/build/create_binaries/add_metadata.jl @@ -24,7 +24,7 @@ function add_metadata(project_dir, license_file, output_dir, git_repo) ) # the Manifest.toml always gives the exact version of Ribasim that was built cp( - normpath(project_dir, "Manifest.toml"), + normpath(git_repo, "Manifest.toml"), normpath(output_dir, "share/julia/Manifest.toml"); force = true, ) @@ -35,7 +35,7 @@ function add_metadata(project_dir, license_file, output_dir, git_repo) open(normpath(output_dir, "README.md"), "a") do io # since the exact Ribasim version may be hard to find in the Manifest.toml file # we can also extract that information, and add it to the README.md - manifest = TOML.parsefile(normpath(project_dir, "Manifest.toml")) + manifest = TOML.parsefile(normpath(git_repo, "Manifest.toml")) if !haskey(manifest, "manifest_format") error("Manifest.toml is in the old format, run Pkg.upgrade_manifest()") end diff --git a/build/create_binaries/src/create_binaries.jl b/build/create_binaries/src/create_binaries.jl new file mode 100644 index 000000000..12701a5c9 --- /dev/null +++ b/build/create_binaries/src/create_binaries.jl @@ -0,0 +1,4 @@ +__precompile__(false) + +# This is not really a package, but needs to be set up like one so we can run +# `dev build/create_binaries` from the root project. diff --git a/build/libribasim/Manifest.toml b/build/libribasim/Manifest.toml deleted file mode 100644 index 95db712d6..000000000 --- a/build/libribasim/Manifest.toml +++ /dev/null @@ -1,1356 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "acdb5a19082f8635b39f23593d4b72c8c85cad8e" - -[[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" - -[[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" -uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" - -[[deps.Adapt]] -deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" -uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] - - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" - -[[deps.ArnoldiMethod]] -deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" -uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.2.0" - -[[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" -uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" - - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - 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-[[deps.SparseArrays]] -deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] -uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - -[[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" -uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.8.0" - - [deps.SparseDiffTools.extensions] - SparseDiffToolsEnzymeExt = "Enzyme" - SparseDiffToolsSymbolicsExt = "Symbolics" - SparseDiffToolsZygoteExt = "Zygote" - - [deps.SparseDiffTools.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" - -[[deps.SpecialFunctions]] -deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" -uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" -weakdeps = ["ChainRulesCore"] - - [deps.SpecialFunctions.extensions] - SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" - -[[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "f295e0a1da4ca425659c57441bcb59abb035a4bc" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.8" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25" -uuid = 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-git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" -uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.TZJData]] -deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" -uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" - -[[deps.TableTraits]] -deps = ["IteratorInterfaceExtensions"] -git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" -uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" -version = "1.0.1" - -[[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" -uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" - -[[deps.TerminalLoggers]] -deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] -git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" -uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.7" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.2" - -[[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" -uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" -weakdeps = ["RecipesBase"] - - [deps.TimeZones.extensions] - TimeZonesRecipesBaseExt = "RecipesBase" - -[[deps.TimerOutputs]] -deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7" -uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.23" - -[[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" - -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "b182207d4af54ac64cbc71797765068fdeff475d" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.64" - -[[deps.VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" - -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" - -[[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" - -[[deps.ZygoteRules]] -deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/build/ribasim_cli/Project.toml b/build/ribasim_cli/Project.toml index ccdb443aa..dedb7e3ef 100644 --- a/build/ribasim_cli/Project.toml +++ b/build/ribasim_cli/Project.toml @@ -1,6 +1,7 @@ name = "ribasim_cli" uuid = "e45c999e-e944-4589-a8e6-7d0b7a60140a" -authors = ["Deltares and contributors"] +authors = ["Deltares and contributors "] +manifest = "../../Manifest.toml" version = "0.1.0" [deps] diff --git a/core/Project.toml b/core/Project.toml index f6870c236..d5e379975 100644 --- a/core/Project.toml +++ b/core/Project.toml @@ -1,6 +1,7 @@ name = "Ribasim" uuid = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" authors = ["Deltares and contributors "] +manifest = "../Manifest.toml" version = "0.4.0" [deps] diff --git a/docs/Manifest.toml b/docs/Manifest.toml deleted file mode 100644 index 0ea664daa..000000000 --- a/docs/Manifest.toml +++ /dev/null @@ -1,142 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.9.3" -manifest_format = "2.0" -project_hash = "f9da26c97b8dd21bb861d490428435c07bbfff72" - -[[deps.ANSIColoredPrinters]] -git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c" -uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9" -version = "0.0.1" - -[[deps.Base64]] -uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Dates]] -deps = ["Printf"] -uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" - -[[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" -uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Documenter]] -deps = ["ANSIColoredPrinters", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "39fd748a73dce4c05a9655475e437170d8fb1b67" -uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.27.25" - -[[deps.DocumenterMarkdown]] -deps = ["Documenter"] -git-tree-sha1 = "9af057a98652336e30586d8092fac06f8b28ecdc" -uuid = "997ab1e6-3595-5248-9280-8efb232c3433" -version = "0.2.2" - -[[deps.IOCapture]] -deps = ["Logging", "Random"] -git-tree-sha1 = "d75853a0bdbfb1ac815478bacd89cd27b550ace6" -uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" -version = "0.2.3" - -[[deps.InteractiveUtils]] -deps = ["Markdown"] -uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" -uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" - -[[deps.JSON3]] -deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] -git-tree-sha1 = "95220473901735a0f4df9d1ca5b171b568b2daa3" -uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.13.2" - -[[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] -uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" - -[[deps.Logging]] -uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" - -[[deps.Markdown]] -deps = ["Base64"] -uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" - -[[deps.Mmap]] -uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.NetworkOptions]] -uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.2.0" - -[[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" -uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" - -[[deps.Parsers]] -deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" -uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.PrecompileTools]] -deps = ["Preferences"] -git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f" -uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.2.0" - -[[deps.Preferences]] -deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" -uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" - -[[deps.Printf]] -deps = ["Unicode"] -uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - -[[deps.Random]] -deps = ["SHA", "Serialization"] -uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.SHA]] -uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" -version = "0.7.0" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.Sockets]] -uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.StructTypes]] -deps = ["Dates", "UUIDs"] -git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" -uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" -version = "1.10.0" - -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" diff --git a/docs/Project.toml b/docs/Project.toml index f94700499..1f51098a5 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -1,14 +1,30 @@ +name = "docs" +uuid = "8daea9ca-fc6c-4731-aa85-717fa0b706bc" +authors = ["Deltares and contributors "] +description = "Build Ribasim docs and generate schemas" +manifest = "../Manifest.toml" +version = "0.1.0" + [deps] +Configurations = "5218b696-f38b-4ac9-8b61-a12ec717816d" +Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" DocumenterMarkdown = "997ab1e6-3595-5248-9280-8efb232c3433" InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240" JSON3 = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" +Legolas = "741b9549-f6ed-4911-9fbf-4a1c0c97f0cd" +Logging = "56ddb016-857b-54e1-b83d-db4d58db5568" OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" +Ribasim = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" [compat] +Configurations = "0.17" +Dates = "1" Documenter = "0.27" DocumenterMarkdown = "0.2" InteractiveUtils = "1" JSON3 = "1.12" +Legolas = "0.5" +Logging = "1" OrderedCollections = "1.6" julia = "1.9" diff --git a/docs/contribute/core.qmd b/docs/contribute/core.qmd index ce2815dc4..cd611748f 100644 --- a/docs/contribute/core.qmd +++ b/docs/contribute/core.qmd @@ -62,7 +62,7 @@ Before the tests can run, you need to [prepare model input](./python.qmd#prepare With the root of the repository as your working directory you can start the REPL with activated `Ribasim` environment by running the following: ```bash -julia --project=core +julia --project ``` While not technically required, it is advised to import Ribasim first to catch installation issues early on. @@ -73,12 +73,6 @@ julia> using Ribasim Then open the Pkg REPL by typing `]` and execute: -```julia -pkg> test -``` - -If you are in a different environment that depends on Ribasim, you can test Ribasim with the following command: - ```julia pkg> test Ribasim ``` @@ -90,15 +84,10 @@ However, here, you don't have the dependencies available in the `[extras]` secti When you then debug your tests inside the REPL, you can include the `[extras]` dependencies as follows: ```julia -using TestEnv -TestEnv.activate() +using TestEnv, +TestEnv.activate("Ribasim") ``` -:::{.callout-tip} -The Julia VS Code extension allows you to [open a REPL](https://www.julia-vscode.org/docs/stable/userguide/runningcode/#The-Julia-REPL) with the Ribasim environment already activated: `"julia.environmentPath": "Ribasim/core"`. -That way you don't have to type `activate core` every time you open the REPL. -::: - ## Render documentation Example models are created and simulated as part of the rendering of the documentation. @@ -131,7 +120,7 @@ Assuming your working directory is the root of the repository, you can activate this project by entering the Pkg mode of the REPL with `]` and execute: ```julia -pkg> activate core +pkg> activate . pkg> instantiate ``` diff --git a/docs/gen_schema.jl b/docs/gen_schema.jl index 11f45faf3..7cde8ffa5 100644 --- a/docs/gen_schema.jl +++ b/docs/gen_schema.jl @@ -1,11 +1,9 @@ """ Generate JSON schemas for Ribasim input -Run with `julia --project=docs docs/gen_schema.jl` +Runs as part of `pixi run codegen` """ -pushfirst!(LOAD_PATH, normpath(@__DIR__, "../core")) - using Ribasim using JSON3 using Legolas diff --git a/docs/make.jl b/docs/make.jl index b1e4e261e..07942b191 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -1,5 +1,5 @@ cd(@__DIR__) -push!(LOAD_PATH, "../core/") + using Documenter, Ribasim using DocumenterMarkdown diff --git a/docs/src/docs.jl b/docs/src/docs.jl new file mode 100644 index 000000000..12701a5c9 --- /dev/null +++ b/docs/src/docs.jl @@ -0,0 +1,4 @@ +__precompile__(false) + +# This is not really a package, but needs to be set up like one so we can run +# `dev build/create_binaries` from the root project. diff --git a/pixi.toml b/pixi.toml index 46afcf750..4568e3fad 100644 --- a/pixi.toml +++ b/pixi.toml @@ -27,17 +27,10 @@ install-without-pre-commit = { depends_on = [ ] } install = { depends_on = ["install-without-pre-commit", "install-pre-commit"] } # Instantiate -instantiate-julia-core = "julia --project=core --eval='using Pkg; Pkg.instantiate()'" -instantiate-julia-docs = "julia --project=docs --eval='using Pkg; Pkg.instantiate()'" -instantiate-julia-build = "julia --project=build/create_binaries --eval='using Pkg; Pkg.instantiate()'" -instantiate-julia = { depends_on = [ - "instantiate-julia-core", - "instantiate-julia-docs", - "instantiate-julia-build", -] } +instantiate-julia = "julia --project --eval='using Pkg; Pkg.instantiate()'" # Docs build-julia-docs = { cmd = "julia --project=docs docs/make.jl", depends_on = [ - "instantiate-julia-docs", + "instantiate-julia", ] } quartodoc-build = "cd docs && quartodoc build && rm objects.json" quarto-preview = { cmd = "export QUARTO_PYTHON=python && quarto preview docs", depends_on = [ @@ -62,11 +55,11 @@ lint = { depends_on = [ # Build build-ribasim-cli = { cmd = "cd build/create_binaries && julia --project create_app.jl", depends_on = [ "generate-testmodels", - "instantiate-julia-build", + "instantiate-julia", ] } build-libribasim = { cmd = "cd build/create_binaries && julia --project create_lib.jl", depends_on = [ "generate-testmodels", - "instantiate-julia-build", + "instantiate-julia", ] } build = { depends_on = ["build-ribasim-cli", "build-libribasim"] } # Test @@ -74,14 +67,14 @@ test-ribasim-python = "pytest --numprocesses=auto python/ribasim/tests" test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=report.xml python/ribasim_api/tests" test-ribasim-cli = "pytest --numprocesses=auto --basetemp=build/ribasim_cli/tests/temp --junitxml=report.xml build/ribasim_cli/tests" test-ribasim-core = { cmd = "julia --project=core --eval 'using Pkg; Pkg.test()'", depends_on = [ - "instantiate-julia-core", + "instantiate-julia", "generate-testmodels", ] } generate-testmodels = "python utils/generate-testmodels.py" tests = { depends_on = ["lint", "test-ribasim-python", "test-ribasim-core"] } # Codegen generate-schema = { cmd = "julia --project=docs docs/gen_schema.jl", depends_on = [ - "instantiate-julia-docs", + "instantiate-julia", ] } generate-python = """\ datamodel-codegen --use-title-as-name --use-double-quotes --disable-timestamp --use-default --strict-nullable --input-file-type=jsonschema --input docs/schema/root.schema.json --output python/ribasim/ribasim/models.py && \ From 2c7e246b037e295bc774b148c060ca8dbf78b252 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Fri, 10 Nov 2023 09:49:58 +0100 Subject: [PATCH 22/32] CompatHelper: bump compat for Documenter to 1 for package docs, (keep existing compat) (#764) This pull request changes the compat entry for the `Documenter` package from `0.27` to `0.27, 1` for package docs. This keeps the compat entries for earlier versions. Note: I have not tested your package with this new compat entry. It is your responsibility to make sure that your package tests pass before you merge this pull request. Co-authored-by: CompatHelper Julia --- docs/Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/Project.toml b/docs/Project.toml index 1f51098a5..f4d1f1ba4 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -20,7 +20,7 @@ Ribasim = "aac5e3d9-0b8f-4d4f-8241-b1a7a9632635" [compat] Configurations = "0.17" Dates = "1" -Documenter = "0.27" +Documenter = "0.27, 1" DocumenterMarkdown = "0.2" InteractiveUtils = "1" JSON3 = "1.12" From 95d552b85a46a81485ee69c00722dd1d9fbf972c Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Fri, 10 Nov 2023 10:54:51 +0100 Subject: [PATCH 23/32] CompatHelper: add new compat entry for SciMLBase at version 2 for package ribasim_cli, (keep existing compat) (#766) This pull request sets the compat entry for the `SciMLBase` package to `2` for package ribasim_cli. This keeps the compat entries for earlier versions. Note: I have not tested your package with this new compat entry. It is your responsibility to make sure that your package tests pass before you merge this pull request. Note: Consider registering a new release of your package immediately after merging this PR, as downstream packages may depend on this for tests to pass. --------- Co-authored-by: CompatHelper Julia Co-authored-by: Martijn Visser --- build/ribasim_cli/Project.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/build/ribasim_cli/Project.toml b/build/ribasim_cli/Project.toml index dedb7e3ef..5c23d2cb7 100644 --- a/build/ribasim_cli/Project.toml +++ b/build/ribasim_cli/Project.toml @@ -15,5 +15,6 @@ TerminalLoggers = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" [compat] Dates = "1" Logging = "1" +SciMLBase = "1.60, 2" TOML = "1" julia = "1.9" From 92478c7c56041646635c8a4fec267edb8eb54917 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Fri, 10 Nov 2023 10:55:00 +0100 Subject: [PATCH 24/32] CompatHelper: add new compat entry for TerminalLoggers at version 0.1 for package ribasim_cli, (keep existing compat) (#765) This pull request sets the compat entry for the `TerminalLoggers` package to `0.1` for package ribasim_cli. This keeps the compat entries for earlier versions. Note: I have not tested your package with this new compat entry. It is your responsibility to make sure that your package tests pass before you merge this pull request. Note: Consider registering a new release of your package immediately after merging this PR, as downstream packages may depend on this for tests to pass. --------- Co-authored-by: CompatHelper Julia Co-authored-by: Martijn Visser --- build/ribasim_cli/Project.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/build/ribasim_cli/Project.toml b/build/ribasim_cli/Project.toml index 5c23d2cb7..d84018710 100644 --- a/build/ribasim_cli/Project.toml +++ b/build/ribasim_cli/Project.toml @@ -17,4 +17,5 @@ Dates = "1" Logging = "1" SciMLBase = "1.60, 2" TOML = "1" +TerminalLoggers = "0.1.7" julia = "1.9" From 8366c28d335d8ec1ed8bae2712aa104425bab420 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Fri, 10 Nov 2023 11:11:30 +0100 Subject: [PATCH 25/32] move build code into create_binaries package (#762) Follow up to #740. --------- Co-authored-by: Hofer-Julian <30049909+Hofer-Julian@users.noreply.github.com> --- build/create_binaries/README.md | 7 +++- build/create_binaries/build.jl | 20 ++++++++++ build/create_binaries/create_app.jl | 39 ------------------- build/create_binaries/create_lib.jl | 24 ------------ .../create_binaries/{ => src}/add_metadata.jl | 0 build/create_binaries/src/create_app.jl | 32 +++++++++++++++ build/create_binaries/src/create_binaries.jl | 17 ++++++-- build/create_binaries/src/create_lib.jl | 18 +++++++++ build/create_binaries/src/strip_cldr.jl | 25 ++++++++++++ build/create_binaries/strip_cldr.jl | 24 ------------ pixi.toml | 9 +++-- 11 files changed, 121 insertions(+), 94 deletions(-) create mode 100644 build/create_binaries/build.jl delete mode 100644 build/create_binaries/create_app.jl delete mode 100644 build/create_binaries/create_lib.jl rename build/create_binaries/{ => src}/add_metadata.jl (100%) create mode 100644 build/create_binaries/src/create_app.jl create mode 100644 build/create_binaries/src/create_lib.jl create mode 100644 build/create_binaries/src/strip_cldr.jl delete mode 100644 build/create_binaries/strip_cldr.jl diff --git a/build/create_binaries/README.md b/build/create_binaries/README.md index 70dbb26db..b6ade3e69 100644 --- a/build/create_binaries/README.md +++ b/build/create_binaries/README.md @@ -1,6 +1,5 @@ # Create Binaries - Build the app with: ``` @@ -12,3 +11,9 @@ Build the shared library with: ``` pixi run build-libribasim ``` + +Build both with: + +``` +pixi run build +``` diff --git a/build/create_binaries/build.jl b/build/create_binaries/build.jl new file mode 100644 index 000000000..9c27c6e84 --- /dev/null +++ b/build/create_binaries/build.jl @@ -0,0 +1,20 @@ +using create_binaries + +""" +Build the Ribasim CLI, libribasim, or both, using PackageCompiler. +Run from the command line with: + + julia --project build.jl --app --lib +""" +function main(ARGS) + # change directory to this script's location + cd(@__DIR__) + + if "--app" in ARGS + build_app() + elseif "--lib" in ARGS + build_lib() + end +end + +main(ARGS) diff --git a/build/create_binaries/create_app.jl b/build/create_binaries/create_app.jl deleted file mode 100644 index 72e6a7262..000000000 --- a/build/create_binaries/create_app.jl +++ /dev/null @@ -1,39 +0,0 @@ -using PackageCompiler -using TOML -using LibGit2 - -include("strip_cldr.jl") - -# change directory to this script's location -cd(@__DIR__) - -project_dir = "../ribasim_cli" -license_file = "../../LICENSE" -output_dir = "ribasim_cli" -git_repo = "../.." - -create_app( - project_dir, - output_dir; - # map from binary name to julia function name - executables = ["ribasim" => "julia_main"], - precompile_execution_file = "precompile.jl", - include_lazy_artifacts = true, - force = true, -) - -include("add_metadata.jl") -add_metadata(project_dir, license_file, output_dir, git_repo) - -# On Windows, write ribasim.cmd in the output_dir, that starts ribasim.exe. -# Since the bin dir contains a julia.exe and many DLLs that you may not want in your path, -# with this script you can put output_dir in your path instead. -if Sys.iswindows() - cmd = raw""" - @echo off - "%~dp0bin\ribasim.exe" %* - """ - open(normpath(output_dir, "ribasim.cmd"); write = true) do io - print(io, cmd) - end -end diff --git a/build/create_binaries/create_lib.jl b/build/create_binaries/create_lib.jl deleted file mode 100644 index 0b8364099..000000000 --- a/build/create_binaries/create_lib.jl +++ /dev/null @@ -1,24 +0,0 @@ -using PackageCompiler -using TOML -using LibGit2 - -include("strip_cldr.jl") - -cd(@__DIR__) - -project_dir = "../libribasim" -license_file = "../../LICENSE" -output_dir = "libribasim" -git_repo = "../.." - -create_library( - project_dir, - output_dir; - lib_name = "libribasim", - precompile_execution_file = "precompile.jl", - include_lazy_artifacts = true, - force = true, -) - -include("add_metadata.jl") -add_metadata(project_dir, license_file, output_dir, git_repo) diff --git a/build/create_binaries/add_metadata.jl b/build/create_binaries/src/add_metadata.jl similarity index 100% rename from build/create_binaries/add_metadata.jl rename to build/create_binaries/src/add_metadata.jl diff --git a/build/create_binaries/src/create_app.jl b/build/create_binaries/src/create_app.jl new file mode 100644 index 000000000..056dc5b7b --- /dev/null +++ b/build/create_binaries/src/create_app.jl @@ -0,0 +1,32 @@ +"Build the Ribasim CLI using PackageCompiler" +function build_app() + project_dir = "../ribasim_cli" + license_file = "../../LICENSE" + output_dir = "ribasim_cli" + git_repo = "../.." + + create_app( + project_dir, + output_dir; + # map from binary name to julia function name + executables = ["ribasim" => "julia_main"], + precompile_execution_file = "precompile.jl", + include_lazy_artifacts = true, + force = true, + ) + + add_metadata(project_dir, license_file, output_dir, git_repo) + + # On Windows, write ribasim.cmd in the output_dir, that starts ribasim.exe. + # Since the bin dir contains a julia.exe and many DLLs that you may not want in your path, + # with this script you can put output_dir in your path instead. + if Sys.iswindows() + cmd = raw""" + @echo off + "%~dp0bin\ribasim.exe" %* + """ + open(normpath(output_dir, "ribasim.cmd"); write = true) do io + print(io, cmd) + end + end +end diff --git a/build/create_binaries/src/create_binaries.jl b/build/create_binaries/src/create_binaries.jl index 12701a5c9..dcd00dba1 100644 --- a/build/create_binaries/src/create_binaries.jl +++ b/build/create_binaries/src/create_binaries.jl @@ -1,4 +1,15 @@ -__precompile__(false) +module create_binaries -# This is not really a package, but needs to be set up like one so we can run -# `dev build/create_binaries` from the root project. +using Artifacts +using PackageCompiler +using TOML +using LibGit2 + +export build_app, build_lib + +include("strip_cldr.jl") +include("add_metadata.jl") +include("create_app.jl") +include("create_lib.jl") + +end diff --git a/build/create_binaries/src/create_lib.jl b/build/create_binaries/src/create_lib.jl new file mode 100644 index 000000000..8e8b01a31 --- /dev/null +++ b/build/create_binaries/src/create_lib.jl @@ -0,0 +1,18 @@ +"Build libribasim using PackageCompiler" +function build_lib() + project_dir = "../libribasim" + license_file = "../../LICENSE" + output_dir = "libribasim" + git_repo = "../.." + + create_library( + project_dir, + output_dir; + lib_name = "libribasim", + precompile_execution_file = "precompile.jl", + include_lazy_artifacts = true, + force = true, + ) + + add_metadata(project_dir, license_file, output_dir, git_repo) +end diff --git a/build/create_binaries/src/strip_cldr.jl b/build/create_binaries/src/strip_cldr.jl new file mode 100644 index 000000000..d63765403 --- /dev/null +++ b/build/create_binaries/src/strip_cldr.jl @@ -0,0 +1,25 @@ +""" +The cldr artifact has such long paths that it errors on Windows unless long paths are enabled. +Also the artifact has many files and is over 300 MB, while we only need a single small file. +This modifies the artifact to remove everything except the file we need. +Since the artifact is only used on Windows, only strip do it there. +This needs exactly TimeZones 1.13.0, which is fixed in the Project.toml. +https://github.com/JuliaTime/TimeZones.jl/issues/373 +""" +function strip_cldr() + if Sys.iswindows() + # Get the artifact directory and the file path we need to keep + hash = Base.SHA1("40b35727ea0aff9a9f28b7454004b68849caf67b") + @assert artifact_exists(hash) + artifact_dir = artifact_path(hash) + keep_file = + normpath(artifact_dir, "cldr-release-43-1/common/supplemental/windowsZones.xml") + @assert isfile(keep_file) + + # Read the file into memory, empty the artifact dir, and write the file back + keep_file_content = read(keep_file) + rm(artifact_dir; recursive = true) + mkpath(dirname(keep_file)) + write(keep_file, keep_file_content) + end +end diff --git a/build/create_binaries/strip_cldr.jl b/build/create_binaries/strip_cldr.jl deleted file mode 100644 index fbded628c..000000000 --- a/build/create_binaries/strip_cldr.jl +++ /dev/null @@ -1,24 +0,0 @@ -# The cldr artifact has such long paths that it errors on Windows unless long paths are enabled. -# Also the artifact has many files and is over 300 MB, while we only need a single small file. -# This modifies the artifact to remove everything except the file we need. -# Since the artifact is only used on Windows, only strip do it there. -# This needs exactly TimeZones 1.13.0, which is fixed in the Project.toml. -# https://github.com/JuliaTime/TimeZones.jl/issues/373 - -using Artifacts - -if Sys.iswindows() - # Get the artifact directory and the file path we need to keep - hash = Base.SHA1("40b35727ea0aff9a9f28b7454004b68849caf67b") - @assert artifact_exists(hash) - artifact_dir = artifact_path(hash) - keep_file = - normpath(artifact_dir, "cldr-release-43-1/common/supplemental/windowsZones.xml") - @assert isfile(keep_file) - - # Read the file into memory, empty the artifact dir, and write the file back - keep_file_content = read(keep_file) - rm(artifact_dir; recursive = true) - mkpath(dirname(keep_file)) - write(keep_file, keep_file_content) -end diff --git a/pixi.toml b/pixi.toml index 4568e3fad..196b1c12b 100644 --- a/pixi.toml +++ b/pixi.toml @@ -53,15 +53,18 @@ lint = { depends_on = [ "mypy-ribasim-api", ] } # Build -build-ribasim-cli = { cmd = "cd build/create_binaries && julia --project create_app.jl", depends_on = [ +build-ribasim-cli = { cmd = "cd build/create_binaries && julia --project build.jl --app", depends_on = [ "generate-testmodels", "instantiate-julia", ] } -build-libribasim = { cmd = "cd build/create_binaries && julia --project create_lib.jl", depends_on = [ +build-libribasim = { cmd = "cd build/create_binaries && julia --project build.jl --lib", depends_on = [ + "generate-testmodels", + "instantiate-julia", +] } +build = { "cmd" = "julia --project build.jl --app --lib", cwd = "build/create_binaries", depends_on = [ "generate-testmodels", "instantiate-julia", ] } -build = { depends_on = ["build-ribasim-cli", "build-libribasim"] } # Test test-ribasim-python = "pytest --numprocesses=auto python/ribasim/tests" test-ribasim-api = "pytest --basetemp=python/ribasim_api/tests/temp --junitxml=report.xml python/ribasim_api/tests" From 0828b17883096ddc88f5aff4ecc83a9fa2522b19 Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Fri, 10 Nov 2023 11:11:38 +0100 Subject: [PATCH 26/32] update to ruff 1.5, add notebook settings (#763) This follows the suggestions from https://astral.sh/blog/ruff-v0.1.5 Also moves `settings_template.json` to `settings.json` as suggested by @deltamarnix. The only part I'm not sure about if it is wise to remove the file from `.gitignore`. If local changes keep appearing there, we can revert that part. --- .gitignore | 3 -- .../{settings_template.json => settings.json} | 4 ++ docs/contribute/python.qmd | 4 +- pixi.lock | 48 +++++++++---------- ruff.toml | 1 + 5 files changed, 30 insertions(+), 30 deletions(-) rename .vscode/{settings_template.json => settings.json} (71%) diff --git a/.gitignore b/.gitignore index 5522fae2a..892171b84 100644 --- a/.gitignore +++ b/.gitignore @@ -146,9 +146,6 @@ dmypy.json # Pyre type checker .pyre/ -# vscode -.vscode/settings.json - /.luarc.json build/ribasim_cli/tests/temp/ python/ribasim_api/tests/temp/ diff --git a/.vscode/settings_template.json b/.vscode/settings.json similarity index 71% rename from .vscode/settings_template.json rename to .vscode/settings.json index bd65da885..0a301f9dd 100644 --- a/.vscode/settings_template.json +++ b/.vscode/settings.json @@ -3,6 +3,10 @@ "editor.formatOnSave": true }, "notebook.formatOnSave.enabled": true, + "notebook.codeActionsOnSave": { + "source.fixAll.ruff": true, + "source.organizeImports.ruff": true + }, "[python]": { "editor.defaultFormatter": "charliermarsh.ruff", "editor.formatOnSave": true, diff --git a/docs/contribute/python.qmd b/docs/contribute/python.qmd index 6aa4ddb51..a6363eb01 100644 --- a/docs/contribute/python.qmd +++ b/docs/contribute/python.qmd @@ -41,9 +41,7 @@ If the example models change, re-run this script. ## Setup Visual Studio Code (optional) {#sec-vscode} -1. Install the [Python](https://marketplace.visualstudio.com/items?itemName=ms-python.python), [ruff](https://marketplace.visualstudio.com/items?itemName=charliermarsh.ruff) and [autoDocstring](https://marketplace.visualstudio.com/items?itemName=njpwerner.autodocstring) extensions. - -2. Copy `.vscode/settings_template.json` into `.vscode/settings.json` +Install the [Python](https://marketplace.visualstudio.com/items?itemName=ms-python.python), [ruff](https://marketplace.visualstudio.com/items?itemName=charliermarsh.ruff) and [autoDocstring](https://marketplace.visualstudio.com/items?itemName=njpwerner.autodocstring) extensions. ## Linting diff --git a/pixi.lock b/pixi.lock index 416b5eff1..c0c9aa91e 100644 --- a/pixi.lock +++ b/pixi.lock @@ -28242,7 +28242,7 @@ package: size: 95111 timestamp: 1695997251086 - name: ruff - version: 0.1.3 + version: 0.1.5 manager: conda platform: linux-64 dependencies: @@ -28250,10 +28250,10 @@ package: libstdcxx-ng: '>=12' python: '>=3.12,<3.13.0a0' python_abi: 3.12.* *_cp312 - url: https://conda.anaconda.org/conda-forge/linux-64/ruff-0.1.3-py312h9118e91_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/ruff-0.1.5-py312h9118e91_0.conda hash: - md5: a6d67f24f7338fcf79a4847e0932662f - sha256: 0b9236f3d36fcd780b8dfa1f09555e61f5a458c6ae1e729c56516840ad50f714 + md5: 2e2cb56137053970a885157905d6e9cf + sha256: b775431fbb2da9dcf3c4de070738565c3dda0d0cb84bb4e5d7892c81eaa4924b optional: false category: main build: py312h9118e91_0 @@ -28262,10 +28262,10 @@ package: build_number: 0 license: MIT license_family: MIT - size: 4786754 - timestamp: 1698380134703 + size: 4832209 + timestamp: 1699507697400 - name: ruff - version: 0.1.3 + version: 0.1.5 manager: conda platform: osx-64 dependencies: @@ -28273,10 +28273,10 @@ package: libcxx: '>=16.0.6' python: '>=3.12,<3.13.0a0' python_abi: 3.12.* *_cp312 - url: https://conda.anaconda.org/conda-forge/osx-64/ruff-0.1.3-py312hde94f14_0.conda + url: https://conda.anaconda.org/conda-forge/osx-64/ruff-0.1.5-py312hde94f14_0.conda hash: - md5: 5b399a2f71cf3119c95518da923293f7 - sha256: f174a816bbd69f9247cd019e6f1c585ea61662adfea75a953f8b388a923eef6b + md5: 2b74e5920fd7a4a9cee52f930a5d46b1 + sha256: ac50dea60681c922487a57c2991c0c27222c7464c2abd6894915c278bcc2dbe4 optional: false category: main build: py312hde94f14_0 @@ -28285,10 +28285,10 @@ package: build_number: 0 license: MIT license_family: MIT - size: 4545901 - timestamp: 1698380808287 + size: 4587294 + timestamp: 1699508051210 - name: ruff - version: 0.1.3 + version: 0.1.5 manager: conda platform: osx-arm64 dependencies: @@ -28296,10 +28296,10 @@ package: libcxx: '>=16.0.6' python: '>=3.12,<3.13.0a0 *_cpython' python_abi: 3.12.* *_cp312 - url: https://conda.anaconda.org/conda-forge/osx-arm64/ruff-0.1.3-py312h6267552_0.conda + url: https://conda.anaconda.org/conda-forge/osx-arm64/ruff-0.1.5-py312h6267552_0.conda hash: - md5: 3a9fda73483adf1a8e6316d7f5ccc082 - sha256: 34172741dfee4c2d79b8322b16f48b3c884fb6637486d3fd29ea4a73ffa81443 + md5: 2cdcc0e70bac01459ea476f601f88973 + sha256: 0eb116cc02b720ebd128c921086255a21709a9c702892ebbfa0a9216539bdf2b optional: false category: main build: py312h6267552_0 @@ -28308,10 +28308,10 @@ package: build_number: 0 license: MIT license_family: MIT - size: 4318346 - timestamp: 1698381201022 + size: 4352351 + timestamp: 1699508088217 - name: ruff - version: 0.1.3 + version: 0.1.5 manager: conda platform: win-64 dependencies: @@ -28320,10 +28320,10 @@ package: ucrt: '>=10.0.20348.0' vc: '>=14.2,<15' vc14_runtime: '>=14.29.30139' - url: https://conda.anaconda.org/conda-forge/win-64/ruff-0.1.3-py312h60fbdae_0.conda + url: https://conda.anaconda.org/conda-forge/win-64/ruff-0.1.5-py312h60fbdae_0.conda hash: - md5: f7480f5842a3856bf071a20641f4fa48 - sha256: d93bd89ee69d6186cd353093a20e32e41c1fcb9c42084a08978d93262c8b1e1f + md5: 0c9a42fcc3a43981469e40943c54cf61 + sha256: 3f71f687e38c4c03a656afbe81e009aa69b7a86678ba05d7f5bb54e9536bd699 optional: false category: main build: py312h60fbdae_0 @@ -28332,8 +28332,8 @@ package: build_number: 0 license: MIT license_family: MIT - size: 4710102 - timestamp: 1698381156587 + size: 4746907 + timestamp: 1699508620199 - name: s2n version: 1.3.55 manager: conda diff --git a/ruff.toml b/ruff.toml index 15303116e..0f7924e99 100644 --- a/ruff.toml +++ b/ruff.toml @@ -13,6 +13,7 @@ ignore = [ "PD901", ] fixable = ["I"] +extend-include = ["*.ipynb"] [pydocstyle] convention = "numpy" From 3e1d6b91584225487361095c924a6ddfb847ef3b Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Fri, 10 Nov 2023 13:02:28 +0100 Subject: [PATCH 27/32] update to pixi 0.6 (#767) This changes the lockfile format, and updates all versions, so it is important that everyone is on this release, but I think that is already the case. --- pixi.lock | 24978 +++++++++++++++++++++++++--------------------------- pixi.toml | 6 +- 2 files changed, 12129 insertions(+), 12855 deletions(-) diff --git a/pixi.lock b/pixi.lock index c0c9aa91e..3b465d511 100644 --- a/pixi.lock +++ b/pixi.lock @@ -18,17 +18,16 @@ metadata: inputs_metadata: null custom_metadata: null package: -- name: _libgcc_mutex +- platform: linux-64 + name: _libgcc_mutex version: '0.1' + category: main manager: conda - platform: linux-64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 hash: md5: d7c89558ba9fa0495403155b64376d81 sha256: fe51de6107f9edc7aa4f786a70f4a883943bc9d39b3bb7307c04c41410990726 - optional: false - category: main build: conda_forge arch: x86_64 subdir: linux-64 @@ -36,19 +35,18 @@ package: license: None size: 2562 timestamp: 1578324546067 -- name: _openmp_mutex +- platform: linux-64 + name: _openmp_mutex version: '4.5' + category: main manager: conda - platform: linux-64 dependencies: - _libgcc_mutex: ==0.1 conda_forge - libgomp: '>=7.5.0' + - _libgcc_mutex 0.1 conda_forge + - libgomp >=7.5.0 url: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 hash: md5: 73aaf86a425cc6e73fcf236a5a46396d sha256: fbe2c5e56a653bebb982eda4876a9178aedfc2b545f25d0ce9c4c0b508253d22 - optional: false - category: main build: 2_gnu arch: x86_64 subdir: linux-64 @@ -59,18 +57,17 @@ package: license_family: BSD size: 23621 timestamp: 1650670423406 -- name: alsa-lib +- platform: linux-64 + name: alsa-lib version: 1.2.10 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' + - libgcc-ng >=12 url: https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.10-hd590300_0.conda hash: md5: 75dae9a4201732aa78a530b826ee5fe0 sha256: 51147922bad9d3176e780eb26f748f380cd3184896a9f9125d8ac64fe330158b - optional: false - category: main build: hd590300_0 arch: x86_64 subdir: linux-64 @@ -79,21 +76,20 @@ package: license_family: GPL size: 554938 timestamp: 1693607226431 -- name: anyio +- platform: linux-64 + name: anyio version: 4.0.0 + category: main manager: conda - platform: linux-64 dependencies: - exceptiongroup: '*' - idna: '>=2.8' - python: '>=3.8' - sniffio: '>=1.1' + - exceptiongroup + - idna >=2.8 + - python >=3.8 + - sniffio >=1.1 url: https://conda.anaconda.org/conda-forge/noarch/anyio-4.0.0-pyhd8ed1ab_0.conda hash: md5: 3c4e99d3ae4ec033d4dd99fb5220e540 sha256: 64125775b2e724db5c72e431dd180495d5d509d0a2d1228a122e6af9f1b60e33 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: linux-64 @@ -105,21 +101,20 @@ package: noarch: python size: 98958 timestamp: 1693488730301 -- name: anyio +- platform: osx-64 + name: anyio version: 4.0.0 + category: main manager: conda - platform: osx-64 dependencies: - exceptiongroup: '*' - idna: '>=2.8' - python: '>=3.8' - sniffio: '>=1.1' + - exceptiongroup + - idna >=2.8 + - python >=3.8 + - sniffio >=1.1 url: https://conda.anaconda.org/conda-forge/noarch/anyio-4.0.0-pyhd8ed1ab_0.conda hash: md5: 3c4e99d3ae4ec033d4dd99fb5220e540 sha256: 64125775b2e724db5c72e431dd180495d5d509d0a2d1228a122e6af9f1b60e33 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: osx-64 @@ -131,21 +126,20 @@ package: noarch: python size: 98958 timestamp: 1693488730301 -- name: anyio +- platform: osx-arm64 + name: anyio version: 4.0.0 + category: main manager: conda - platform: osx-arm64 dependencies: - exceptiongroup: '*' - idna: '>=2.8' - python: '>=3.8' - sniffio: '>=1.1' + - exceptiongroup + - idna >=2.8 + - python >=3.8 + - sniffio >=1.1 url: https://conda.anaconda.org/conda-forge/noarch/anyio-4.0.0-pyhd8ed1ab_0.conda hash: md5: 3c4e99d3ae4ec033d4dd99fb5220e540 sha256: 64125775b2e724db5c72e431dd180495d5d509d0a2d1228a122e6af9f1b60e33 - optional: false - category: main build: pyhd8ed1ab_0 arch: aarch64 subdir: osx-arm64 @@ -157,21 +151,20 @@ package: noarch: python size: 98958 timestamp: 1693488730301 -- name: anyio +- platform: win-64 + name: anyio version: 4.0.0 + category: main manager: conda - platform: win-64 dependencies: - exceptiongroup: '*' - idna: '>=2.8' - python: '>=3.8' - sniffio: '>=1.1' + - exceptiongroup + - idna >=2.8 + - python >=3.8 + - sniffio >=1.1 url: https://conda.anaconda.org/conda-forge/noarch/anyio-4.0.0-pyhd8ed1ab_0.conda hash: md5: 3c4e99d3ae4ec033d4dd99fb5220e540 sha256: 64125775b2e724db5c72e431dd180495d5d509d0a2d1228a122e6af9f1b60e33 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: win-64 @@ -183,18 +176,17 @@ package: noarch: python size: 98958 timestamp: 1693488730301 -- name: appnope +- platform: osx-64 + name: appnope version: 0.1.3 + category: main manager: conda - platform: osx-64 dependencies: - python: '>=2.7' + - python >=2.7 url: https://conda.anaconda.org/conda-forge/noarch/appnope-0.1.3-pyhd8ed1ab_0.tar.bz2 hash: md5: 54ac328d703bff191256ffa1183126d1 sha256: b209a68ac55eb9ecad7042f0d4eedef5da924699f6cdf54ac1826869cfdae742 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: osx-64 @@ -204,18 +196,17 @@ package: noarch: python size: 8095 timestamp: 1649077760928 -- name: appnope +- platform: osx-arm64 + name: appnope version: 0.1.3 + category: main manager: conda - platform: osx-arm64 dependencies: - python: '>=2.7' + - python >=2.7 url: https://conda.anaconda.org/conda-forge/noarch/appnope-0.1.3-pyhd8ed1ab_0.tar.bz2 hash: md5: 54ac328d703bff191256ffa1183126d1 sha256: b209a68ac55eb9ecad7042f0d4eedef5da924699f6cdf54ac1826869cfdae742 - optional: false - category: main build: pyhd8ed1ab_0 arch: aarch64 subdir: osx-arm64 @@ -225,18 +216,17 @@ package: noarch: python size: 8095 timestamp: 1649077760928 -- name: argcomplete - version: 3.1.2 +- platform: linux-64 + name: argcomplete + version: 3.1.4 + category: main manager: conda - platform: linux-64 dependencies: - python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/argcomplete-3.1.2-pyhd8ed1ab_0.conda + - python >=3.8 + url: https://conda.anaconda.org/conda-forge/noarch/argcomplete-3.1.4-pyhd8ed1ab_0.conda hash: - md5: 05718204d3570baccbda39c830bbe4d9 - sha256: fc193581a3084f0e732145a99d488838ab394d8d97bd200bcdf9e4be00e0d07d - optional: false - category: main + md5: 1be9feadb435ef26456efaf70852ce93 + sha256: e0abc3e71e9f0af65afb9dc3f3d4991c117508023ebcef223b2394a43313ccc9 build: pyhd8ed1ab_0 arch: x86_64 subdir: linux-64 @@ -244,20 +234,19 @@ package: license: Apache-2.0 license_family: Apache noarch: python - size: 39476 - timestamp: 1694937085441 -- name: argcomplete - version: 3.1.2 + size: 39566 + timestamp: 1698912237718 +- platform: osx-64 + name: argcomplete + version: 3.1.4 + category: main manager: conda - platform: osx-64 dependencies: - python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/argcomplete-3.1.2-pyhd8ed1ab_0.conda + - python >=3.8 + url: https://conda.anaconda.org/conda-forge/noarch/argcomplete-3.1.4-pyhd8ed1ab_0.conda hash: - md5: 05718204d3570baccbda39c830bbe4d9 - sha256: fc193581a3084f0e732145a99d488838ab394d8d97bd200bcdf9e4be00e0d07d - optional: false - 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size: 39476 - timestamp: 1694937085441 -- name: argcomplete - version: 3.1.2 + size: 39566 + timestamp: 1698912237718 +- platform: win-64 + name: argcomplete + version: 3.1.4 + category: main manager: conda - platform: win-64 dependencies: - python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/argcomplete-3.1.2-pyhd8ed1ab_0.conda + - python >=3.8 + url: https://conda.anaconda.org/conda-forge/noarch/argcomplete-3.1.4-pyhd8ed1ab_0.conda hash: - md5: 05718204d3570baccbda39c830bbe4d9 - sha256: fc193581a3084f0e732145a99d488838ab394d8d97bd200bcdf9e4be00e0d07d - optional: false - category: main + md5: 1be9feadb435ef26456efaf70852ce93 + sha256: e0abc3e71e9f0af65afb9dc3f3d4991c117508023ebcef223b2394a43313ccc9 build: pyhd8ed1ab_0 arch: x86_64 subdir: win-64 @@ -307,22 +294,21 @@ package: license: Apache-2.0 license_family: Apache noarch: python - size: 39476 - timestamp: 1694937085441 -- name: argon2-cffi + size: 39566 + timestamp: 1698912237718 +- platform: linux-64 + name: argon2-cffi version: 23.1.0 + category: main manager: conda - 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numpy: '*' - python: '>=3.6' - requests: '*' - url: https://conda.anaconda.org/conda-forge/noarch/folium-0.14.0-pyhd8ed1ab_0.conda + - branca >=0.7.0 + - jinja2 >=2.9 + - numpy + - python >=3.7 + - requests + url: https://conda.anaconda.org/conda-forge/noarch/folium-0.15.0-pyhd8ed1ab_0.conda hash: - md5: 48c8bb19df0d0268f1a9d30ffc56c5b0 - sha256: 60c51dacc4edb33ba02a7224ddec9d938200f89588eb34b0ccdffc96155795fe - optional: false - category: main + md5: 25f5dbce4f946240dea7d2ee79d34254 + sha256: afe869f136fca1dbda8be0c342392fda99d951c4c4612f134a70efbf5449ef30 build: pyhd8ed1ab_0 arch: x86_64 subdir: win-64 @@ -6832,19 +6459,18 @@ package: license: MIT license_family: MIT noarch: python - size: 72892 - timestamp: 1670956406559 -- name: font-ttf-dejavu-sans-mono + size: 73353 + timestamp: 1699298809319 +- platform: linux-64 + name: font-ttf-dejavu-sans-mono version: '2.37' + category: main manager: conda - platform: linux-64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2 hash: md5: 0c96522c6bdaed4b1566d11387caaf45 sha256: 58d7f40d2940dd0a8aa28651239adbf5613254df0f75789919c4e6762054403b - 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platform: osx-arm64 dependencies: - bmipy: '*' - numpy: '*' - python: '>=3.8' + - bmipy + - numpy + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/xmipy-1.3.1-pyhd8ed1ab_0.conda hash: md5: a3c8465bfc71004064a30c0238a74ea3 sha256: d702574ef63e5e44085c390b46090380097b3d63bbcbfe8d9e85f1828663d04c - optional: false - category: main build: pyhd8ed1ab_0 arch: aarch64 subdir: osx-arm64 @@ -32869,20 +32190,19 @@ package: noarch: python size: 18460 timestamp: 1681486998644 -- name: xmipy +- platform: win-64 + name: xmipy version: 1.3.1 + category: main manager: conda - platform: win-64 dependencies: - bmipy: '*' - numpy: '*' - python: '>=3.8' + - bmipy + - numpy + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/xmipy-1.3.1-pyhd8ed1ab_0.conda hash: md5: a3c8465bfc71004064a30c0238a74ea3 sha256: d702574ef63e5e44085c390b46090380097b3d63bbcbfe8d9e85f1828663d04c - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: win-64 @@ -32891,18 +32211,17 @@ package: noarch: python size: 18460 timestamp: 1681486998644 -- name: xorg-kbproto +- platform: linux-64 + name: xorg-kbproto version: 1.0.7 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=9.3.0' + - libgcc-ng >=9.3.0 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-h7f98852_1002.tar.bz2 hash: md5: 4b230e8381279d76131116660f5a241a sha256: e90b0a6a5d41776f11add74aa030f789faf4efd3875c31964d6f9cfa63a10dd1 - optional: false - category: main build: h7f98852_1002 arch: x86_64 subdir: linux-64 @@ -32911,18 +32230,17 @@ package: license_family: MIT size: 27338 timestamp: 1610027759842 -- name: xorg-libice +- platform: linux-64 + name: xorg-libice version: 1.1.1 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' + - libgcc-ng >=12 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libice-1.1.1-hd590300_0.conda hash: md5: b462a33c0be1421532f28bfe8f4a7514 sha256: 5aa9b3682285bb2bf1a8adc064cb63aff76ef9178769740d855abb42b0d24236 - optional: false - category: main build: hd590300_0 arch: x86_64 subdir: linux-64 @@ -32931,20 +32249,19 @@ package: license_family: MIT size: 58469 timestamp: 1685307573114 -- name: xorg-libsm +- platform: linux-64 + name: xorg-libsm version: 1.2.4 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' - libuuid: '>=2.38.1,<3.0a0' - xorg-libice: '>=1.1.1,<2.0a0' + - libgcc-ng >=12 + - libuuid >=2.38.1,<3.0a0 + - xorg-libice >=1.1.1,<2.0a0 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libsm-1.2.4-h7391055_0.conda hash: md5: 93ee23f12bc2e684548181256edd2cf6 sha256: 089ad5f0453c604e18985480218a84b27009e9e6de9a0fa5f4a20b8778ede1f1 - optional: false - category: main build: h7391055_0 arch: x86_64 subdir: linux-64 @@ -32953,22 +32270,21 @@ package: license_family: MIT size: 27433 timestamp: 1685453649160 -- name: xorg-libx11 +- platform: linux-64 + name: xorg-libx11 version: 1.8.7 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' - libxcb: '>=1.15,<1.16.0a0' - xorg-kbproto: '*' - xorg-xextproto: '>=7.3.0,<8.0a0' - xorg-xproto: '*' + - libgcc-ng >=12 + - libxcb >=1.15,<1.16.0a0 + - xorg-kbproto + - xorg-xextproto >=7.3.0,<8.0a0 + - xorg-xproto url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libx11-1.8.7-h8ee46fc_0.conda hash: md5: 49e482d882669206653b095f5206c05b sha256: 7a02a7beac472ae2759498550b5fc5261bf5be7a9a2b4648a3f67818a7bfefcf - optional: false - category: main build: h8ee46fc_0 arch: x86_64 subdir: linux-64 @@ -32977,18 +32293,17 @@ package: license_family: MIT size: 828692 timestamp: 1697056910935 -- name: xorg-libxau +- platform: linux-64 + name: xorg-libxau version: 1.0.11 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' + - libgcc-ng >=12 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hd590300_0.conda hash: md5: 2c80dc38fface310c9bd81b17037fee5 sha256: 309751371d525ce50af7c87811b435c176915239fc9e132b99a25d5e1703f2d4 - optional: false - category: main build: hd590300_0 arch: x86_64 subdir: linux-64 @@ -32997,17 +32312,16 @@ package: license_family: MIT size: 14468 timestamp: 1684637984591 -- name: xorg-libxau +- platform: osx-64 + name: xorg-libxau version: 1.0.11 + category: main manager: conda - platform: osx-64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-64/xorg-libxau-1.0.11-h0dc2134_0.conda hash: md5: 9566b4c29274125b0266d0177b5eb97b sha256: 8a2e398c4f06f10c64e69f56bcf3ddfa30b432201446a0893505e735b346619a - optional: false - category: main build: h0dc2134_0 arch: x86_64 subdir: osx-64 @@ -33016,17 +32330,16 @@ package: license_family: MIT size: 13071 timestamp: 1684638167647 -- name: xorg-libxau +- platform: osx-arm64 + name: xorg-libxau version: 1.0.11 + category: main manager: conda - platform: osx-arm64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-arm64/xorg-libxau-1.0.11-hb547adb_0.conda hash: md5: ca73dc4f01ea91e44e3ed76602c5ea61 sha256: 02c313a1cada46912e5b9bdb355cfb4534bfe22143b4ea4ecc419690e793023b - optional: false - category: main build: hb547adb_0 arch: aarch64 subdir: osx-arm64 @@ -33035,19 +32348,18 @@ package: license_family: MIT size: 13667 timestamp: 1684638272445 -- name: xorg-libxau +- platform: win-64 + name: xorg-libxau version: 1.0.11 + category: main manager: conda - platform: win-64 dependencies: - m2w64-gcc-libs: '*' - m2w64-gcc-libs-core: '*' + - m2w64-gcc-libs + - m2w64-gcc-libs-core url: https://conda.anaconda.org/conda-forge/win-64/xorg-libxau-1.0.11-hcd874cb_0.conda hash: md5: c46ba8712093cb0114404ae8a7582e1a sha256: 8c5b976e3b36001bdefdb41fb70415f9c07eff631f1f0155f3225a7649320e77 - optional: false - category: main build: hcd874cb_0 arch: x86_64 subdir: win-64 @@ -33056,18 +32368,17 @@ package: license_family: MIT size: 51297 timestamp: 1684638355740 -- name: xorg-libxdmcp +- platform: linux-64 + name: xorg-libxdmcp version: 1.1.3 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=9.3.0' + - libgcc-ng >=9.3.0 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxdmcp-1.1.3-h7f98852_0.tar.bz2 hash: md5: be93aabceefa2fac576e971aef407908 sha256: 4df7c5ee11b8686d3453e7f3f4aa20ceef441262b49860733066c52cfd0e4a77 - optional: false - category: main build: h7f98852_0 arch: x86_64 subdir: linux-64 @@ -33076,17 +32387,16 @@ package: license_family: MIT size: 19126 timestamp: 1610071769228 -- name: xorg-libxdmcp +- platform: osx-64 + name: xorg-libxdmcp version: 1.1.3 + category: main manager: conda - platform: osx-64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-64/xorg-libxdmcp-1.1.3-h35c211d_0.tar.bz2 hash: md5: 86ac76d6bf1cbb9621943eb3bd9ae36e sha256: 485421c16f03a01b8ed09984e0b2ababdbb3527e1abf354ff7646f8329be905f - optional: false - category: main build: h35c211d_0 arch: x86_64 subdir: osx-64 @@ -33095,17 +32405,16 @@ package: license_family: MIT size: 17225 timestamp: 1610071995461 -- name: xorg-libxdmcp +- platform: osx-arm64 + name: xorg-libxdmcp version: 1.1.3 + category: main manager: conda - platform: osx-arm64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-arm64/xorg-libxdmcp-1.1.3-h27ca646_0.tar.bz2 hash: md5: 6738b13f7fadc18725965abdd4129c36 sha256: d9a2fb4762779994718832f05a7d62ab2dcf6103a312235267628b5187ce88f7 - optional: false - category: main build: h27ca646_0 arch: aarch64 subdir: osx-arm64 @@ -33114,18 +32423,17 @@ package: license_family: MIT size: 18164 timestamp: 1610071737668 -- name: xorg-libxdmcp +- platform: win-64 + name: xorg-libxdmcp version: 1.1.3 + category: main manager: conda - platform: win-64 dependencies: - m2w64-gcc-libs: '*' + - m2w64-gcc-libs url: https://conda.anaconda.org/conda-forge/win-64/xorg-libxdmcp-1.1.3-hcd874cb_0.tar.bz2 hash: md5: 46878ebb6b9cbd8afcf8088d7ef00ece sha256: f51205d33c07d744ec177243e5d9b874002910c731954f2c8da82459be462b93 - optional: false - category: main build: hcd874cb_0 arch: x86_64 subdir: win-64 @@ -33134,20 +32442,19 @@ package: license_family: MIT size: 67908 timestamp: 1610072296570 -- name: xorg-libxext +- platform: linux-64 + name: xorg-libxext version: 1.3.4 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' - xorg-libx11: '>=1.7.2,<2.0a0' - xorg-xextproto: '*' + - libgcc-ng >=12 + - xorg-libx11 >=1.7.2,<2.0a0 + - xorg-xextproto url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxext-1.3.4-h0b41bf4_2.conda hash: md5: 82b6df12252e6f32402b96dacc656fec sha256: 73e5cfbdff41ef8a844441f884412aa5a585a0f0632ec901da035a03e1fe1249 - optional: false - category: main build: h0b41bf4_2 arch: x86_64 subdir: linux-64 @@ -33156,20 +32463,19 @@ package: license_family: MIT size: 50143 timestamp: 1677036907815 -- name: xorg-libxrender +- platform: linux-64 + name: xorg-libxrender version: 0.9.11 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' - xorg-libx11: '>=1.8.6,<2.0a0' - xorg-renderproto: '*' + - libgcc-ng >=12 + - xorg-libx11 >=1.8.6,<2.0a0 + - xorg-renderproto url: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxrender-0.9.11-hd590300_0.conda hash: md5: ed67c36f215b310412b2af935bf3e530 sha256: 26da4d1911473c965c32ce2b4ff7572349719eaacb88a066db8d968a4132c3f7 - optional: false - category: main build: hd590300_0 arch: x86_64 subdir: linux-64 @@ -33178,18 +32484,17 @@ package: license_family: MIT size: 37770 timestamp: 1688300707994 -- name: xorg-renderproto +- platform: linux-64 + name: xorg-renderproto version: 0.11.1 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=9.3.0' + - libgcc-ng >=9.3.0 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-renderproto-0.11.1-h7f98852_1002.tar.bz2 hash: md5: 06feff3d2634e3097ce2fe681474b534 sha256: 38942930f233d1898594dd9edf4b0c0786f3dbc12065a0c308634c37fd936034 - optional: false - category: main build: h7f98852_1002 arch: x86_64 subdir: linux-64 @@ -33198,18 +32503,17 @@ package: license_family: MIT size: 9621 timestamp: 1614866326326 -- name: xorg-xextproto +- platform: linux-64 + name: xorg-xextproto version: 7.3.0 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' + - libgcc-ng >=12 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-xextproto-7.3.0-h0b41bf4_1003.conda hash: md5: bce9f945da8ad2ae9b1d7165a64d0f87 sha256: b8dda3b560e8a7830fe23be1c58cc41f407b2e20ae2f3b6901eb5842ba62b743 - optional: false - category: main build: h0b41bf4_1003 arch: x86_64 subdir: linux-64 @@ -33218,18 +32522,17 @@ package: license_family: MIT size: 30270 timestamp: 1677036833037 -- name: xorg-xf86vidmodeproto +- platform: linux-64 + name: xorg-xf86vidmodeproto version: 2.3.1 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=9.3.0' + - libgcc-ng >=9.3.0 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-xf86vidmodeproto-2.3.1-h7f98852_1002.tar.bz2 hash: md5: 3ceea9668625c18f19530de98b15d5b0 sha256: 43398aeacad5b8753b7a1c12cb6bca36124e0c842330372635879c350c430791 - optional: false - category: main build: h7f98852_1002 arch: x86_64 subdir: linux-64 @@ -33238,18 +32541,17 @@ package: license_family: MIT size: 23875 timestamp: 1620067286978 -- name: xorg-xproto +- platform: linux-64 + name: xorg-xproto version: 7.0.31 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=9.3.0' + - libgcc-ng >=9.3.0 url: https://conda.anaconda.org/conda-forge/linux-64/xorg-xproto-7.0.31-h7f98852_1007.tar.bz2 hash: md5: b4a4381d54784606820704f7b5f05a15 sha256: f197bb742a17c78234c24605ad1fe2d88b1d25f332b75d73e5ba8cf8fbc2a10d - optional: false - category: main build: h7f98852_1007 arch: x86_64 subdir: linux-64 @@ -33258,18 +32560,17 @@ package: license_family: MIT size: 74922 timestamp: 1607291557628 -- name: xyzservices +- platform: linux-64 + name: xyzservices version: 2023.10.1 + category: main manager: conda - platform: linux-64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.1-pyhd8ed1ab_0.conda hash: md5: 1e0d85c0e2fef9539218da185b285f54 sha256: da655e2e0a742fddefeeaf2dd828b62a1820a3755d13341e1a555a10fcb9cf81 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: linux-64 @@ -33279,18 +32580,17 @@ package: noarch: python size: 36184 timestamp: 1698325478381 -- name: xyzservices +- platform: osx-64 + name: xyzservices version: 2023.10.1 + category: main manager: conda - platform: osx-64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.1-pyhd8ed1ab_0.conda hash: md5: 1e0d85c0e2fef9539218da185b285f54 sha256: da655e2e0a742fddefeeaf2dd828b62a1820a3755d13341e1a555a10fcb9cf81 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: osx-64 @@ -33300,18 +32600,17 @@ package: noarch: python size: 36184 timestamp: 1698325478381 -- name: xyzservices +- platform: osx-arm64 + name: xyzservices version: 2023.10.1 + category: main manager: conda - platform: osx-arm64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.1-pyhd8ed1ab_0.conda hash: md5: 1e0d85c0e2fef9539218da185b285f54 sha256: da655e2e0a742fddefeeaf2dd828b62a1820a3755d13341e1a555a10fcb9cf81 - optional: false - category: main build: pyhd8ed1ab_0 arch: aarch64 subdir: osx-arm64 @@ -33321,18 +32620,17 @@ package: noarch: python size: 36184 timestamp: 1698325478381 -- name: xyzservices +- platform: win-64 + name: xyzservices version: 2023.10.1 + category: main manager: conda - platform: win-64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/xyzservices-2023.10.1-pyhd8ed1ab_0.conda hash: md5: 1e0d85c0e2fef9539218da185b285f54 sha256: da655e2e0a742fddefeeaf2dd828b62a1820a3755d13341e1a555a10fcb9cf81 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: win-64 @@ -33342,18 +32640,17 @@ package: noarch: python size: 36184 timestamp: 1698325478381 -- name: xz +- platform: linux-64 + name: xz version: 5.2.6 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' + - libgcc-ng >=12 url: https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2 hash: md5: 2161070d867d1b1204ea749c8eec4ef0 sha256: 03a6d28ded42af8a347345f82f3eebdd6807a08526d47899a42d62d319609162 - optional: false - category: main build: h166bdaf_0 arch: x86_64 subdir: linux-64 @@ -33361,17 +32658,16 @@ package: license: LGPL-2.1 and GPL-2.0 size: 418368 timestamp: 1660346797927 -- name: xz +- platform: osx-64 + name: xz version: 5.2.6 + category: main manager: conda - platform: osx-64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-64/xz-5.2.6-h775f41a_0.tar.bz2 hash: md5: a72f9d4ea13d55d745ff1ed594747f10 sha256: eb09823f34cc2dd663c0ec4ab13f246f45dcd52e5b8c47b9864361de5204a1c8 - optional: false - category: main build: h775f41a_0 arch: x86_64 subdir: osx-64 @@ -33379,17 +32675,16 @@ package: license: LGPL-2.1 and GPL-2.0 size: 238119 timestamp: 1660346964847 -- name: xz +- platform: osx-arm64 + name: xz version: 5.2.6 + category: main manager: conda - platform: osx-arm64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-arm64/xz-5.2.6-h57fd34a_0.tar.bz2 hash: md5: 39c6b54e94014701dd157f4f576ed211 sha256: 59d78af0c3e071021cfe82dc40134c19dab8cdf804324b62940f5c8cd71803ec - optional: false - category: main build: h57fd34a_0 arch: aarch64 subdir: osx-arm64 @@ -33397,19 +32692,18 @@ package: license: LGPL-2.1 and GPL-2.0 size: 235693 timestamp: 1660346961024 -- name: xz +- platform: win-64 + name: xz version: 5.2.6 + category: main manager: conda - platform: win-64 dependencies: - vc: '>=14.1,<15' - vs2015_runtime: '>=14.16.27033' + - vc >=14.1,<15 + - vs2015_runtime >=14.16.27033 url: https://conda.anaconda.org/conda-forge/win-64/xz-5.2.6-h8d14728_0.tar.bz2 hash: md5: 515d77642eaa3639413c6b1bc3f94219 sha256: 54d9778f75a02723784dc63aff4126ff6e6749ba21d11a6d03c1f4775f269fe0 - optional: false - category: main build: h8d14728_0 arch: x86_64 subdir: win-64 @@ -33417,18 +32711,17 @@ package: license: LGPL-2.1 and GPL-2.0 size: 217804 timestamp: 1660346976440 -- name: yaml +- platform: linux-64 + name: yaml version: 0.2.5 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=9.4.0' + - libgcc-ng >=9.4.0 url: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h7f98852_2.tar.bz2 hash: md5: 4cb3ad778ec2d5a7acbdf254eb1c42ae sha256: a4e34c710eeb26945bdbdaba82d3d74f60a78f54a874ec10d373811a5d217535 - optional: false - category: main build: h7f98852_2 arch: x86_64 subdir: linux-64 @@ -33437,17 +32730,16 @@ package: license_family: MIT size: 89141 timestamp: 1641346969816 -- name: yaml +- platform: osx-64 + name: yaml version: 0.2.5 + category: main manager: conda - platform: osx-64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-64/yaml-0.2.5-h0d85af4_2.tar.bz2 hash: md5: d7e08fcf8259d742156188e8762b4d20 sha256: 5301417e2c8dea45b401ffee8df3957d2447d4ce80c83c5ff151fc6bfe1c4148 - optional: false - category: main build: h0d85af4_2 arch: x86_64 subdir: osx-64 @@ -33456,17 +32748,16 @@ package: license_family: MIT size: 84237 timestamp: 1641347062780 -- name: yaml +- platform: osx-arm64 + name: yaml version: 0.2.5 + category: main manager: conda - platform: osx-arm64 - dependencies: {} + dependencies: [] url: https://conda.anaconda.org/conda-forge/osx-arm64/yaml-0.2.5-h3422bc3_2.tar.bz2 hash: md5: 4bb3f014845110883a3c5ee811fd84b4 sha256: 93181a04ba8cfecfdfb162fc958436d868cc37db504c58078eab4c1a3e57fbb7 - optional: false - category: main build: h3422bc3_2 arch: aarch64 subdir: osx-arm64 @@ -33475,19 +32766,18 @@ package: license_family: MIT size: 88016 timestamp: 1641347076660 -- name: yaml +- platform: win-64 + name: yaml version: 0.2.5 + category: main manager: conda - platform: win-64 dependencies: - vc: '>=14.1,<15.0a0' - vs2015_runtime: '>=14.16.27012' + - vc >=14.1,<15.0a0 + - vs2015_runtime >=14.16.27012 url: https://conda.anaconda.org/conda-forge/win-64/yaml-0.2.5-h8ffe710_2.tar.bz2 hash: md5: adbfb9f45d1004a26763652246a33764 sha256: 4e2246383003acbad9682c7c63178e2e715ad0eb84f03a8df1fbfba455dfedc5 - optional: false - category: main build: h8ffe710_2 arch: x86_64 subdir: win-64 @@ -33496,20 +32786,19 @@ package: license_family: MIT size: 63274 timestamp: 1641347623319 -- name: zeromq +- platform: linux-64 + name: zeromq version: 4.3.5 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' - libsodium: '>=1.0.18,<1.0.19.0a0' - libstdcxx-ng: '>=12' + - libgcc-ng >=12 + - libsodium >=1.0.18,<1.0.19.0a0 + - libstdcxx-ng >=12 url: https://conda.anaconda.org/conda-forge/linux-64/zeromq-4.3.5-h59595ed_0.conda hash: md5: 8851084c192dbc56215ac4e3c9aa30fa sha256: 53bf2a18224406e9806adb3b270a2c8a028aca0c89bd40114a85d6446f5c98d1 - optional: false - category: main build: h59595ed_0 arch: x86_64 subdir: linux-64 @@ -33518,20 +32807,19 @@ package: license_family: MOZILLA size: 343455 timestamp: 1697056638125 -- name: zeromq +- platform: osx-64 + name: zeromq version: 4.3.5 + category: main manager: conda - platform: osx-64 dependencies: - __osx: '>=10.9' - libcxx: '>=16.0.6' - libsodium: '>=1.0.18,<1.0.19.0a0' + - __osx >=10.9 + - libcxx >=16.0.6 + - libsodium >=1.0.18,<1.0.19.0a0 url: https://conda.anaconda.org/conda-forge/osx-64/zeromq-4.3.5-h93d8f39_0.conda hash: md5: 4c055e46b394be36681fe476c1e2ee6e sha256: 19be553b3cc8352b6e842134b8de66ae39fcae80bc575c203076370faab6009c - optional: false - category: main build: h93d8f39_0 arch: x86_64 subdir: osx-64 @@ -33540,20 +32828,19 @@ package: license_family: MOZILLA size: 294253 timestamp: 1697057208271 -- name: zeromq +- platform: osx-arm64 + name: zeromq version: 4.3.5 + category: main manager: conda - platform: osx-arm64 dependencies: - __osx: '>=10.9' - libcxx: '>=16.0.6' - libsodium: '>=1.0.18,<1.0.19.0a0' + - __osx >=10.9 + - libcxx >=16.0.6 + - libsodium >=1.0.18,<1.0.19.0a0 url: https://conda.anaconda.org/conda-forge/osx-arm64/zeromq-4.3.5-h965bd2d_0.conda hash: md5: f460bbcb0ec8dc77989288fe8caa0f84 sha256: 06abddc92d0bf83cd9faf25f26c98d7c2cc681cb50504011580b0584cf3cb1c5 - optional: false - category: main build: h965bd2d_0 arch: aarch64 subdir: osx-arm64 @@ -33562,21 +32849,20 @@ package: license_family: MOZILLA size: 287460 timestamp: 1697056868401 -- name: zeromq +- platform: win-64 + name: zeromq version: 4.3.5 + category: main manager: conda - platform: win-64 dependencies: - libsodium: '>=1.0.18,<1.0.19.0a0' - ucrt: '>=10.0.20348.0' - vc: '>=14.2,<15' - vc14_runtime: '>=14.29.30139' + - libsodium >=1.0.18,<1.0.19.0a0 + - ucrt >=10.0.20348.0 + - vc >=14.2,<15 + - vc14_runtime >=14.29.30139 url: https://conda.anaconda.org/conda-forge/win-64/zeromq-4.3.5-h63175ca_0.conda hash: md5: e954e1881091405f36416f772292b396 sha256: f8377793c36e19da17bbb8cf517f1a969b89e1cc7cb9622dc6d60c3d1383c919 - optional: false - category: main build: h63175ca_0 arch: x86_64 subdir: win-64 @@ -33585,18 +32871,17 @@ package: license_family: MOZILLA size: 4210250 timestamp: 1697057168534 -- name: zipp +- platform: linux-64 + name: zipp version: 3.17.0 + category: main manager: conda - platform: linux-64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/zipp-3.17.0-pyhd8ed1ab_0.conda hash: md5: 2e4d6bc0b14e10f895fc6791a7d9b26a sha256: bced1423fdbf77bca0a735187d05d9b9812d2163f60ab426fc10f11f92ecbe26 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: linux-64 @@ -33606,18 +32891,17 @@ package: noarch: python size: 18954 timestamp: 1695255262261 -- name: zipp +- platform: osx-64 + name: zipp version: 3.17.0 + category: main manager: conda - platform: osx-64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/zipp-3.17.0-pyhd8ed1ab_0.conda hash: md5: 2e4d6bc0b14e10f895fc6791a7d9b26a sha256: bced1423fdbf77bca0a735187d05d9b9812d2163f60ab426fc10f11f92ecbe26 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: osx-64 @@ -33627,18 +32911,17 @@ package: noarch: python size: 18954 timestamp: 1695255262261 -- name: zipp +- platform: osx-arm64 + name: zipp version: 3.17.0 + category: main manager: conda - platform: osx-arm64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/zipp-3.17.0-pyhd8ed1ab_0.conda hash: md5: 2e4d6bc0b14e10f895fc6791a7d9b26a sha256: bced1423fdbf77bca0a735187d05d9b9812d2163f60ab426fc10f11f92ecbe26 - optional: false - category: main build: pyhd8ed1ab_0 arch: aarch64 subdir: osx-arm64 @@ -33648,18 +32931,17 @@ package: noarch: python size: 18954 timestamp: 1695255262261 -- name: zipp +- platform: win-64 + name: zipp version: 3.17.0 + category: main manager: conda - platform: win-64 dependencies: - python: '>=3.8' + - python >=3.8 url: https://conda.anaconda.org/conda-forge/noarch/zipp-3.17.0-pyhd8ed1ab_0.conda hash: md5: 2e4d6bc0b14e10f895fc6791a7d9b26a sha256: bced1423fdbf77bca0a735187d05d9b9812d2163f60ab426fc10f11f92ecbe26 - optional: false - category: main build: pyhd8ed1ab_0 arch: x86_64 subdir: win-64 @@ -33669,19 +32951,18 @@ package: noarch: python size: 18954 timestamp: 1695255262261 -- name: zlib +- platform: linux-64 + name: zlib version: 1.2.13 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' - libzlib: ==1.2.13 hd590300_5 + - libgcc-ng >=12 + - libzlib 1.2.13 hd590300_5 url: https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.13-hd590300_5.conda hash: md5: 68c34ec6149623be41a1933ab996a209 sha256: 9887a04d7e7cb14bd2b52fa01858f05a6d7f002c890f618d9fcd864adbfecb1b - optional: false - category: main build: hd590300_5 arch: x86_64 subdir: linux-64 @@ -33690,18 +32971,17 @@ package: license_family: Other size: 92825 timestamp: 1686575231103 -- name: zlib +- platform: osx-64 + name: zlib version: 1.2.13 + category: main manager: conda - platform: osx-64 dependencies: - libzlib: ==1.2.13 h8a1eda9_5 + - libzlib 1.2.13 h8a1eda9_5 url: https://conda.anaconda.org/conda-forge/osx-64/zlib-1.2.13-h8a1eda9_5.conda hash: md5: 75a8a98b1c4671c5d2897975731da42d sha256: d1f4c82fd7bd240a78ce8905e931e68dca5f523c7da237b6b63c87d5625c5b35 - optional: false - category: main build: h8a1eda9_5 arch: x86_64 subdir: osx-64 @@ -33710,18 +32990,17 @@ package: license_family: Other size: 90764 timestamp: 1686575574678 -- name: zlib +- platform: osx-arm64 + name: zlib version: 1.2.13 + category: main manager: conda - platform: osx-arm64 dependencies: - libzlib: ==1.2.13 h53f4e23_5 + - libzlib 1.2.13 h53f4e23_5 url: https://conda.anaconda.org/conda-forge/osx-arm64/zlib-1.2.13-h53f4e23_5.conda hash: md5: a08383f223b10b71492d27566fafbf6c sha256: de0ee1e24aa6867058d3b852a15c8d7f49f262f5828772700c647186d4a96bbe - optional: false - category: main build: h53f4e23_5 arch: aarch64 subdir: osx-arm64 @@ -33730,21 +33009,20 @@ package: license_family: Other size: 79577 timestamp: 1686575471024 -- name: zlib +- platform: win-64 + name: zlib version: 1.2.13 + category: main manager: conda - platform: win-64 dependencies: - libzlib: ==1.2.13 hcfcfb64_5 - ucrt: '>=10.0.20348.0' - vc: '>=14.2,<15' - vc14_runtime: '>=14.29.30139' + - libzlib 1.2.13 hcfcfb64_5 + - ucrt >=10.0.20348.0 + - vc >=14.2,<15 + - vc14_runtime >=14.29.30139 url: https://conda.anaconda.org/conda-forge/win-64/zlib-1.2.13-hcfcfb64_5.conda hash: md5: a318e8622e11663f645cc7fa3260f462 sha256: 0f91b719c7558046bcd37fdc7ae4b9eb2b7a8e335beb8b59ae7ccb285a46aa46 - optional: false - category: main build: hcfcfb64_5 arch: x86_64 subdir: win-64 @@ -33753,20 +33031,19 @@ package: license_family: Other size: 107711 timestamp: 1686575474476 -- name: zstd +- platform: linux-64 + name: zstd version: 1.5.5 + category: main manager: conda - platform: linux-64 dependencies: - libgcc-ng: '>=12' - libstdcxx-ng: '>=12' - libzlib: '>=1.2.13,<1.3.0a0' + - libgcc-ng >=12 + - libstdcxx-ng >=12 + - libzlib >=1.2.13,<1.3.0a0 url: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.5-hfc55251_0.conda hash: md5: 04b88013080254850d6c01ed54810589 sha256: 607cbeb1a533be98ba96cf5cdf0ddbb101c78019f1fda063261871dad6248609 - optional: false - category: main build: hfc55251_0 arch: x86_64 subdir: linux-64 @@ -33775,18 +33052,17 @@ package: license_family: BSD size: 545199 timestamp: 1693151163452 -- name: zstd +- platform: osx-64 + name: zstd version: 1.5.5 + category: main manager: conda - platform: osx-64 dependencies: - libzlib: '>=1.2.13,<1.3.0a0' + - libzlib >=1.2.13,<1.3.0a0 url: https://conda.anaconda.org/conda-forge/osx-64/zstd-1.5.5-h829000d_0.conda hash: md5: 80abc41d0c48b82fe0f04e7f42f5cb7e sha256: d54e31d3d8de5e254c0804abd984807b8ae5cd3708d758a8bf1adff1f5df166c - optional: false - category: main build: h829000d_0 arch: x86_64 subdir: osx-64 @@ -33795,18 +33071,17 @@ package: license_family: BSD size: 499383 timestamp: 1693151312586 -- name: zstd +- platform: osx-arm64 + name: zstd version: 1.5.5 + category: main manager: conda - platform: osx-arm64 dependencies: - libzlib: '>=1.2.13,<1.3.0a0' + - libzlib >=1.2.13,<1.3.0a0 url: https://conda.anaconda.org/conda-forge/osx-arm64/zstd-1.5.5-h4f39d0f_0.conda hash: md5: 5b212cfb7f9d71d603ad891879dc7933 sha256: 7e1fe6057628bbb56849a6741455bbb88705bae6d6646257e57904ac5ee5a481 - optional: false - category: main build: h4f39d0f_0 arch: aarch64 subdir: osx-arm64 @@ -33815,21 +33090,20 @@ package: license_family: BSD size: 400508 timestamp: 1693151393180 -- name: zstd +- platform: win-64 + name: zstd version: 1.5.5 + category: main manager: conda - platform: win-64 dependencies: - libzlib: '>=1.2.13,<1.3.0a0' - ucrt: '>=10.0.20348.0' - vc: '>=14.2,<15' - vc14_runtime: '>=14.29.30139' + - libzlib >=1.2.13,<1.3.0a0 + - ucrt >=10.0.20348.0 + - vc >=14.2,<15 + - vc14_runtime >=14.29.30139 url: https://conda.anaconda.org/conda-forge/win-64/zstd-1.5.5-h12be248_0.conda hash: md5: 792bb5da68bf0a6cac6a6072ecb8dbeb sha256: d540dd56c5ec772b60e4ce7d45f67f01c6614942225885911964ea1e70bb99e3 - optional: false - category: main build: h12be248_0 arch: x86_64 subdir: win-64 diff --git a/pixi.toml b/pixi.toml index 196b1c12b..8ae81344e 100644 --- a/pixi.toml +++ b/pixi.toml @@ -32,7 +32,7 @@ instantiate-julia = "julia --project --eval='using Pkg; Pkg.instantiate()'" build-julia-docs = { cmd = "julia --project=docs docs/make.jl", depends_on = [ "instantiate-julia", ] } -quartodoc-build = "cd docs && quartodoc build && rm objects.json" +quartodoc-build = { cmd = "quartodoc build && rm objects.json", cwd = "docs" } quarto-preview = { cmd = "export QUARTO_PYTHON=python && quarto preview docs", depends_on = [ "quartodoc-build", ] } @@ -53,11 +53,11 @@ lint = { depends_on = [ "mypy-ribasim-api", ] } # Build -build-ribasim-cli = { cmd = "cd build/create_binaries && julia --project build.jl --app", depends_on = [ +build-ribasim-cli = { cmd = "julia --project build.jl --app", cwd = "build/create_binaries", depends_on = [ "generate-testmodels", "instantiate-julia", ] } -build-libribasim = { cmd = "cd build/create_binaries && julia --project build.jl --lib", depends_on = [ +build-libribasim = { cmd = "julia --project build.jl --lib", cwd = "build/create_binaries", depends_on = [ "generate-testmodels", "instantiate-julia", ] } From 5f8fe1b3f58f9aed21907ea01ad2db6955b9d9b3 Mon Sep 17 00:00:00 2001 From: Bart de Koning <74617371+SouthEndMusic@users.noreply.github.com> Date: Fri, 10 Nov 2023 14:10:06 +0100 Subject: [PATCH 28/32] Allocation output file (#743) Fixes https://github.com/Deltares/Ribasim/issues/659. notes: - Allocation not done `t = 0` as no flows for sources are available yet. - The saved abstraction is now the last abstraction before the allocation update, should be the average abstraction since the last allocation solve #754 --------- Co-authored-by: Martijn Visser --- core/src/allocation.jl | 35 ++++- core/src/bmi.jl | 7 +- core/src/config.jl | 1 + core/src/create.jl | 22 ++- core/src/io.jl | 17 +++ core/src/solve.jl | 36 +++-- core/test/allocation.jl | 61 +++++++- core/test/docs.toml | 1 + docs/core/allocation.qmd | 4 +- docs/core/equations.qmd | 21 ++- docs/core/usage.qmd | 18 +++ docs/schema/Config.schema.json | 1 + docs/schema/Results.schema.json | 6 + python/ribasim/ribasim/config.py | 2 + .../ribasim_testmodels/__init__.py | 2 + .../ribasim_testmodels/allocation.py | 138 ++++++++++++++++++ 16 files changed, 348 insertions(+), 24 deletions(-) diff --git a/core/src/allocation.jl b/core/src/allocation.jl index d66ca698e..c893cf4aa 100644 --- a/core/src/allocation.jl +++ b/core/src/allocation.jl @@ -640,6 +640,7 @@ An AllocationModel object. """ function AllocationModel( + allocation_network_id::Int, p::Parameters, subnetwork_node_ids::Vector{Int}, source_edge_ids::Vector{Int}, @@ -667,6 +668,7 @@ function AllocationModel( ) return AllocationModel( + allocation_network_id, subnetwork_node_ids, node_id_mapping, node_id_mapping_inverse, @@ -707,13 +709,37 @@ end """ Assign the allocations to the users as determined by the solution of the allocation problem. """ -function assign_allocations!(allocation_model::AllocationModel, user::User)::Nothing +function assign_allocations!( + allocation_model::AllocationModel, + p::Parameters, + t::Float64, + priority_idx::Int, +)::Nothing (; problem, allocgraph_edge_ids_user_demand, node_id_mapping_inverse) = allocation_model + (; connectivity, user) = p + (; graph_flow, flow) = connectivity + (; record) = user F = problem[:F] + flow = get_tmp(flow, 0) for (allocgraph_node_id, allocgraph_edge_id) in allocgraph_edge_ids_user_demand model_node_id = node_id_mapping_inverse[allocgraph_node_id][1] user_idx = findsorted(user.node_id, model_node_id) - user.allocated[user_idx] .= JuMP.value(F[allocgraph_edge_id]) + allocated = JuMP.value(F[allocgraph_edge_id]) + user.allocated[user_idx][priority_idx] = allocated + + # Save allocations to record + push!(record.time, t) + push!(record.allocation_network_id, allocation_model.allocation_network_id) + push!(record.user_node_id, model_node_id) + push!(record.priority, user.priorities[priority_idx]) + push!(record.demand, user.demand[user_idx][priority_idx](t)) + push!(record.allocated, allocated) + # Note: This is now the last abstraction before the allocation update, + # should be the average abstraction since the last allocation solve + push!( + record.abstracted, + flow[only(inneighbors(graph_flow, model_node_id)), model_node_id], + ) end return nothing end @@ -778,6 +804,7 @@ and flows, solve the allocation problem and assign the results to the users. function allocate!(p::Parameters, allocation_model::AllocationModel, t::Float64)::Nothing (; user) = p (; problem) = allocation_model + (; priorities) = user set_source_flows!(allocation_model, p) @@ -786,7 +813,7 @@ function allocate!(p::Parameters, allocation_model::AllocationModel, t::Float64) # in the flow_conservation constraints if the net flow is positive. # Solve this as a separate problem before the priorities below - for priority_idx in eachindex(user.priorities) + for priority_idx in eachindex(priorities) # Subtract the flows used by the allocation of the previous priority from the capacities of the edges # or set edge capacities if priority_idx = 1 adjust_edge_capacities!(allocation_model, priority_idx) @@ -801,6 +828,6 @@ function allocate!(p::Parameters, allocation_model::AllocationModel, t::Float64) end # Assign the allocations to the users for this priority - assign_allocations!(allocation_model, p.user) + assign_allocations!(allocation_model, p, t, priority_idx) end end diff --git a/core/src/bmi.jl b/core/src/bmi.jl index 4273c2c28..6b2a42b6b 100644 --- a/core/src/bmi.jl +++ b/core/src/bmi.jl @@ -167,6 +167,11 @@ function BMI.finalize(model::Model)::Model path = results_path(config, results.control) write_arrow(path, table, compress) + # allocation + table = allocation_table(model) + path = results_path(config, results.allocation) + write_arrow(path, table, compress) + @debug "Wrote results." return model end @@ -217,7 +222,7 @@ function create_callbacks( allocation_cb = PeriodicCallback( update_allocation!, config.allocation.timestep; - initial_affect = true, + initial_affect = false, ) push!(callbacks, allocation_cb) end diff --git a/core/src/config.jl b/core/src/config.jl index d9743b446..f09327eac 100644 --- a/core/src/config.jl +++ b/core/src/config.jl @@ -112,6 +112,7 @@ end basin::String = "results/basin.arrow" flow::String = "results/flow.arrow" control::String = "results/control.arrow" + allocation::String = "results/allocation.arrow" outstate::Union{String, Nothing} = nothing compression::Compression = "zstd" compression_level::Int = 6 diff --git a/core/src/create.jl b/core/src/create.jl index 5ffa4c716..e5a50ed88 100644 --- a/core/src/create.jl +++ b/core/src/create.jl @@ -277,6 +277,7 @@ function generate_allocation_models!(p::Parameters, db::DB, config::Config)::Not push!( connectivity.allocation_models, AllocationModel( + allocation_network_id, p, allocation_group_node.fid, source_edge_ids, @@ -601,10 +602,10 @@ function DiscreteControl(db::DB, config::Config)::DiscreteControl look_ahead = coalesce.(condition.look_ahead, 0.0) record = ( - time = Vector{Float64}(), - control_node_id = Vector{Int}(), - truth_state = Vector{String}(), - control_state = Vector{String}(), + time = Float64[], + control_node_id = Int[], + truth_state = String[], + control_state = String[], ) return DiscreteControl( @@ -773,7 +774,17 @@ function User(db::DB, config::Config)::User error("Errors occurred when parsing User data.") end - allocated = [zeros(length(priorities)) for id in node_ids] + allocated = [fill(Inf, length(priorities)) for id in node_ids] + + record = ( + time = Float64[], + allocation_network_id = Int[], + user_node_id = Int[], + priority = Int[], + demand = Float64[], + allocated = Float64[], + abstracted = Float64[], + ) return User( node_ids, @@ -783,6 +794,7 @@ function User(db::DB, config::Config)::User return_factor, min_level, priorities, + record, ) end diff --git a/core/src/io.jl b/core/src/io.jl index 3d0e0631e..66d315cc0 100644 --- a/core/src/io.jl +++ b/core/src/io.jl @@ -210,6 +210,23 @@ function discrete_control_table(model::Model)::NamedTuple return (; time, record.control_node_id, record.truth_state, record.control_state) end +"Create an allocation result table for the saved data" +function allocation_table(model::Model)::NamedTuple + (; config) = model + (; record) = model.integrator.p.user + + time = datetime_since.(record.time, config.starttime) + return (; + time, + record.allocation_network_id, + record.user_node_id, + record.priority, + record.demand, + record.allocated, + record.abstracted, + ) +end + "Write a result table to disk as an Arrow file" function write_arrow( path::AbstractString, diff --git a/core/src/solve.jl b/core/src/solve.jl index 90d2cc212..effa8b62a 100644 --- a/core/src/solve.jl +++ b/core/src/solve.jl @@ -7,6 +7,7 @@ const VectorInterpolation = """ Store information for a subnetwork used for allocation. +allocation_network_id: The ID of this allocation network node_id: All the IDs of the nodes that are in this subnetwork node_id_mapping: Mapping Dictionary; model_node_id => AG_node_id where such a correspondence exists (all AG node ids are in the values) @@ -19,6 +20,7 @@ problem: The JuMP.jl model for solving the allocation problem Δt_allocation: The time interval between consecutive allocation solves """ struct AllocationModel + allocation_network_id::Int node_id::Vector{Int} node_id_mapping::Dict{Int, Tuple{Int, Symbol}} node_id_mapping_inverse::Dict{Int, Tuple{Int, Symbol}} @@ -405,9 +407,11 @@ struct DiscreteControl <: AbstractParameterNode condition_value::Vector{Bool} control_state::Dict{Int, Tuple{String, Float64}} logic_mapping::Dict{Tuple{Int, String}, String} - record::NamedTuple{ - (:time, :control_node_id, :truth_state, :control_state), - Tuple{Vector{Float64}, Vector{Int}, Vector{String}, Vector{String}}, + record::@NamedTuple{ + time::Vector{Float64}, + control_node_id::Vector{Int}, + truth_state::Vector{String}, + control_state::Vector{String}, } end @@ -439,7 +443,8 @@ allocated: water flux currently allocated to user per priority return_factor: the factor in [0,1] of how much of the abstracted water is given back to the system min_level: The level of the source basin below which the user does not abstract priorities: All used priority values. Each user has a demand for all these priorities, -which is always 0.0 if it is not provided explicitly. + which is 0.0 if it is not provided explicitly. +record: Collected data of allocation optimizations for output file. """ struct User <: AbstractParameterNode node_id::Vector{Int} @@ -449,6 +454,15 @@ struct User <: AbstractParameterNode return_factor::Vector{Float64} min_level::Vector{Float64} priorities::Vector{Int} + record::@NamedTuple{ + time::Vector{Float64}, + allocation_network_id::Vector{Int}, + user_node_id::Vector{Int}, + priority::Vector{Int}, + demand::Vector{Float64}, + allocated::Vector{Float64}, + abstracted::Vector{Float64}, + } end # TODO Automatically add all nodetypes here @@ -787,12 +801,16 @@ function formulate_flow!( continue end - # For now allocated = demand - for priority in eachindex(allocated[i]) - allocated[i][priority] = demand[i][priority](t) - end + q = 0.0 - q = sum(allocated[i]) + # Take as effectively allocated the minimum of what is allocated by allocation optimization + # and the current demand. + # If allocation is not optimized then allocated = Inf, so the result is always + # effectively allocated = demand. + for priority_idx in eachindex(allocated[i]) + alloc = min(allocated[i][priority_idx], demand[i][priority_idx](t)) + q += alloc + end # Smoothly let abstraction go to 0 as the source basin dries out _, basin_idx = id_index(basin.node_id, src_id) diff --git a/core/test/allocation.jl b/core/test/allocation.jl index 4228d2372..2d67ec35b 100644 --- a/core/test/allocation.jl +++ b/core/test/allocation.jl @@ -2,6 +2,7 @@ import Ribasim import JuMP using SQLite using PreallocationTools: get_tmp +using DataFrames: DataFrame @testset "Allocation solve" begin toml_path = normpath(@__DIR__, "../../generated_testmodels/subnetwork/ribasim.toml") @@ -22,7 +23,63 @@ using PreallocationTools: get_tmp @test F ≈ [0.0, 4.0, 0.0, 0.0, 0.0, 4.5] allocated = p.user.allocated - @test allocated[1] ≈ [4.0, 4.0] - @test allocated[2] ≈ [0.0, 0.0] + @test allocated[1] ≈ [0.0, 4.0] + @test allocated[2] ≈ [4.0, 0.0] @test allocated[3] ≈ [0.0, 0.0] end + +@testset "Simulation with allocation" begin + toml_path = + normpath(@__DIR__, "../../generated_testmodels/minimal_subnetwork/ribasim.toml") + @test ispath(toml_path) + model = Ribasim.run(toml_path) + record = DataFrame(model.integrator.p.user.record) + where_5 = (record.user_node_id .== 5) + n_datapoints = sum(where_5) + + record_5 = record[where_5, :] + record_6 = record[.!where_5, :] + + @test all(record_5.demand .== 1.0e-3) + @test all( + isapprox( + record_5.allocated, + collect(range(1.0e-3, 0.0, n_datapoints)); + rtol = 0.01, + ), + ) + @test all( + isapprox( + record_5.abstracted[2:end], + collect(range(1.0e-3, 0.0, n_datapoints))[2:end]; + rtol = 0.01, + ), + ) + @test all( + isapprox( + record_6.demand, + collect(range(1.0e-3, 2.0e-3, n_datapoints)); + rtol = 0.01, + ), + ) + @test all( + isapprox( + record_6.allocated, + collect(range(1.0e-3, 2.0e-3, n_datapoints)); + rtol = 0.01, + ), + ) + @test all( + isapprox( + record_6.abstracted[2:end], + collect(range(1.0e-3, 2.0e-3, n_datapoints))[2:end]; + rtol = 0.01, + ), + ) + + allocation_output_path = normpath( + @__DIR__, + "../../generated_testmodels/minimal_subnetwork/results/allocation.arrow", + ) + @test isfile(allocation_output_path) +end diff --git a/core/test/docs.toml b/core/test/docs.toml index 6b9124cf0..0338e085d 100644 --- a/core/test/docs.toml +++ b/core/test/docs.toml @@ -40,5 +40,6 @@ timing = false # optional, whether to log debug timing statements flow = "results/flow.arrow" # optional, default "results/flow.arrow" basin = "results/basin.arrow" # optional, default "results/basin.arrow" control = "results/control.arrow" # optional, default "results/control.arrow" +allocation = "results/allocation.arrow" # optional, default "results/allocation.arrow" compression = "zstd" # optional, default "zstd", also supports "lz4" compression_level = 6 # optional, default 6 diff --git a/docs/core/allocation.qmd b/docs/core/allocation.qmd index 5f3509d89..35f09279a 100644 --- a/docs/core/allocation.qmd +++ b/docs/core/allocation.qmd @@ -62,8 +62,8 @@ Both fractional flow nodes and user nodes dictate proportional relationships bet A new graph is created from the subnetwork, which we call the allocation graph. To indicate the difference between subnetwork data and allocation graph data, the allocation graph data is denoted with a hat. The allocation graph consists of: -- Nodes $\hat{V_S}$, where each basin, source and user in the subnetwork get a node in the allocation graph. Also nodes that have fractional flow outneighbors get a node in the allocation graph. The implementation makes heavy use of the node id mapping $m_S : i \mapsto \hat{i}$ to translate from subnetwork node IDs to allocation graph node IDs. Unless specified otherwise, we assume this relationship between index symbols that appear both with and without a hat. -- Edges $\hat{E_S}$, where the edges in the allocation graph are given by one or more edges in the subnetwork, where those edges connect nodes in the subnetwork that have an equivalent in the allocation graph. The direction of the edges in the allocation graph is given by the direction constraints in the subnetwork. +- Nodes $\hat{V}_s$, where each basin, source and user in the subnetwork get a node in the allocation graph. Also nodes that have fractional flow outneighbors get a node in the allocation graph. The implementation makes heavy use of the node id mapping $m_S : i \mapsto \hat{i}$ to translate from subnetwork node IDs to allocation graph node IDs. Unless specified otherwise, we assume this relationship between index symbols that appear both with and without a hat. +- Edges $\hat{E}_S$, where the edges in the allocation graph are given by one or more edges in the subnetwork, where those edges connect nodes in the subnetwork that have an equivalent in the allocation graph. The direction of the edges in the allocation graph is given by the direction constraints in the subnetwork. For notational convenience, we use the notation diff --git a/docs/core/equations.qmd b/docs/core/equations.qmd index 5b1d2e606..0ab8aeaa5 100644 --- a/docs/core/equations.qmd +++ b/docs/core/equations.qmd @@ -448,6 +448,25 @@ $$ B = w + 2 d \sqrt{\left(\frac{\Delta y}{\Delta z}\right)^2 + 1} $$ +# User allocation +Users have an allocated flow rate $F^p$ per priority $p=1,2,\ldots, p_{\max}$, which is either determined by [allocation optimization](allocation.qmd) or simply equal to the demand at time $t$; $F^p = d^p(t)$. The actual abstraction rate of a user is given by +$$ + Q_\text{user, in} = \phi(u, 10.0)\phi(h-l_{\min}, 0.1)\sum_{p=1}^{p_{\max}} \min\left(F^p, d^p(t)\right). +$$ + +From left to right: + +- The first reduction factor lets the user abstraction go smoothly to $0$ as the source basin dries out; +- The second reduction factor lets the user abstraction go smoothly to $0$ as the source basin level approaches the minimum source basin level (from above); +- The last term is the sum of the allocations over the priorities. If the current demand happens to be lower than the allocation at some priority, the demand is taken instead. + +Users also have a return factor $0 \le r \le 1$, which determines the return flow (outflow) of the user: + +$$ +Q_\text{user, out} = r \cdot Q_\text{user, in}. +$$ + +Note that this means that the user has a consumption rate of $(1-r)Q_\text{user, in}$. # PID controller {#sec-PID} @@ -523,7 +542,7 @@ Ribasim uses OrdinaryDiffEq.jl to provide a numerical solution to the water balance equations. Changes to forcings or parameters such as precipitation, but also the allocated water abstraction is managed through the use of CallBack functions [@callbacks]. In a coupled run, the exchanges with MODFLOW 6 are also -managed via the use of a callback function. +managed via the use of a callback function. For more a more in-depth discussion of numerical computations see [Numerical considerations](numerics.qmd). # Performance diff --git a/docs/core/usage.qmd b/docs/core/usage.qmd index b20f4987d..5e688fc30 100644 --- a/docs/core/usage.qmd +++ b/docs/core/usage.qmd @@ -425,6 +425,24 @@ return_factor | Float64 | - | between [0 - 1] min_level | Float64 | $m$ | (optional) priority | Int | - | sorted per node id +## Allocation results + +The allocation table contains a record of allocation results: when it happened, for which user node, in which allocation network, and what the demand, allocated flow and abstracted flow were. + +column | type +--------------------- | ----- +time | DateTime +allocation_network_id | Int +user_node_id | Int +priority | Int +demand | Float64 +allocated | Float64 +abstracted | Float64 + +::: {.callout-note} +Currently the stored demand and abstraction rate are those at the allocation timepoint (and the abstraction rate is based on the previous allocation optimization). In the future these will be an average over the previous allocation timestep. +::: + # LevelBoundary Acts like an infinitely large basin where the level does not change by flow. diff --git a/docs/schema/Config.schema.json b/docs/schema/Config.schema.json index 446f9c99a..3ecfe60e7 100644 --- a/docs/schema/Config.schema.json +++ b/docs/schema/Config.schema.json @@ -72,6 +72,7 @@ "basin": "results/basin.arrow", "flow": "results/flow.arrow", "control": "results/control.arrow", + "allocation": "results/allocation.arrow", "outstate": null, "compression": "zstd", "compression_level": 6 diff --git a/docs/schema/Results.schema.json b/docs/schema/Results.schema.json index eb5305fc3..99f4ea9f9 100644 --- a/docs/schema/Results.schema.json +++ b/docs/schema/Results.schema.json @@ -20,6 +20,11 @@ "type": "string", "default": "results/control.arrow" }, + "allocation": { + "format": "default", + "type": "string", + "default": "results/allocation.arrow" + }, "outstate": { "format": "default", "anyOf": [ @@ -47,6 +52,7 @@ "basin", "flow", "control", + "allocation", "compression", "compression_level" ] diff --git a/python/ribasim/ribasim/config.py b/python/ribasim/ribasim/config.py index 28c02343a..4cbceb969 100644 --- a/python/ribasim/ribasim/config.py +++ b/python/ribasim/ribasim/config.py @@ -38,6 +38,7 @@ class Results(BaseModel): basin: str = "results/basin.arrow" flow: str = "results/flow.arrow" control: str = "results/control.arrow" + allocation: str = "results/allocation.arrow" outstate: Optional[str] = None compression: str = "zstd" compression_level: int = 6 @@ -145,6 +146,7 @@ class Config(BaseModel): "basin": "results/basin.arrow", "flow": "results/flow.arrow", "control": "results/control.arrow", + "allocation": "results/allocation.arrow", "outstate": None, "compression": "zstd", "compression_level": 6, diff --git a/python/ribasim_testmodels/ribasim_testmodels/__init__.py b/python/ribasim_testmodels/ribasim_testmodels/__init__.py index 383928301..2a971871f 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/__init__.py +++ b/python/ribasim_testmodels/ribasim_testmodels/__init__.py @@ -6,6 +6,7 @@ import ribasim_testmodels from ribasim_testmodels.allocation import ( + minimal_subnetwork_model, # looped_subnetwork_model, subnetwork_model, user_model, @@ -74,6 +75,7 @@ "outlet_model", "user_model", "subnetwork_model", + "minimal_subnetwork_model", # Disable until this issue is resolved: # https://github.com/Deltares/Ribasim/issues/692 # "looped_subnetwork_model", diff --git a/python/ribasim_testmodels/ribasim_testmodels/allocation.py b/python/ribasim_testmodels/ribasim_testmodels/allocation.py index 5ea605a3e..b593a837b 100644 --- a/python/ribasim_testmodels/ribasim_testmodels/allocation.py +++ b/python/ribasim_testmodels/ribasim_testmodels/allocation.py @@ -285,6 +285,7 @@ def subnetwork_model(): def looped_subnetwork_model(): + """Create a user testmodel representing a subnetwork containing a loop in the topology.""" # Setup the nodes: xy = np.array( [ @@ -530,3 +531,140 @@ def looped_subnetwork_model(): ) return model + + +def minimal_subnetwork_model(): + """Create a subnetwork that is minimal with non-trivial allocation.""" + xy = np.array( + [ + (0.0, 0.0), # 1: FlowBoundary + (0.0, 1.0), # 2: Basin + (0.0, 2.0), # 3: Pump + (0.0, 3.0), # 4: Basin + (-1.0, 4.0), # 5: User + (1.0, 4.0), # 6: User + ] + ) + node_xy = gpd.points_from_xy(x=xy[:, 0], y=xy[:, 1]) + + node_type = ["FlowBoundary", "Basin", "Pump", "Basin", "User", "User"] + + # Make sure the feature id starts at 1: explicitly give an index. + node = ribasim.Node( + static=gpd.GeoDataFrame( + data={"type": node_type, "allocation_network_id": 1}, + index=pd.Index(np.arange(len(xy)) + 1, name="fid"), + geometry=node_xy, + crs="EPSG:28992", + ) + ) + + # Setup the edges: + from_id = np.array( + [1, 2, 3, 4, 4, 5, 6], + dtype=np.int64, + ) + to_id = np.array( + [2, 3, 4, 5, 6, 4, 4], + dtype=np.int64, + ) + allocation_network_id = len(from_id) * [None] + allocation_network_id[0] = 1 + lines = ribasim.utils.geometry_from_connectivity(node, from_id, to_id) + edge = ribasim.Edge( + static=gpd.GeoDataFrame( + data={ + "from_node_id": from_id, + "to_node_id": to_id, + "edge_type": len(from_id) * ["flow"], + "allocation_network_id": allocation_network_id, + }, + geometry=lines, + crs="EPSG:28992", + ) + ) + + # Setup the basins: + profile = pd.DataFrame( + data={ + "node_id": [2, 2, 4, 4], + "area": 1000.0, + "level": 2 * [0.0, 1.0], + } + ) + + static = pd.DataFrame( + data={ + "node_id": [2, 4], + "drainage": 0.0, + "potential_evaporation": 0.0, + "infiltration": 0.0, + "precipitation": 0.0, + "urban_runoff": 0.0, + } + ) + + state = pd.DataFrame(data={"node_id": [2, 4], "level": 1.0}) + + basin = ribasim.Basin(profile=profile, static=static, state=state) + + # Setup the flow boundary: + flow_boundary = ribasim.FlowBoundary( + static=pd.DataFrame( + data={ + "node_id": [1], + "flow_rate": 2.0e-3, + } + ) + ) + + # Setup the pump: + pump = ribasim.Pump( + static=pd.DataFrame( + data={ + "node_id": [3], + "flow_rate": [4.0e-3], + "max_flow_rate": [4.0e-3], + } + ) + ) + + # Setup the users: + user = ribasim.User( + static=pd.DataFrame( + data={ + "node_id": [5], + "demand": 1.0e-3, + "return_factor": 0.9, + "min_level": 0.9, + "priority": 1, + } + ), + time=pd.DataFrame( + data={ + "time": ["2020-01-01 00:00:00", "2021-01-01 00:00:00"], + "node_id": 6, + "demand": [1.0e-3, 2.0e-3], + "return_factor": 0.9, + "min_level": 0.9, + "priority": 1, + } + ), + ) + + # Setup allocation: + allocation = ribasim.Allocation(use_allocation=True, timestep=86400) + + model = ribasim.Model( + node=node, + edge=edge, + basin=basin, + flow_boundary=flow_boundary, + pump=pump, + user=user, + allocation=allocation, + starttime="2020-01-01 00:00:00", + endtime="2021-01-01 00:00:00", + ) + + return model From 316f0f0ad9b0139c665353f5fb39f9a01d2f887e Mon Sep 17 00:00:00 2001 From: Martijn Visser Date: Fri, 10 Nov 2023 14:18:01 +0100 Subject: [PATCH 29/32] Switch to Julia 1.10-rc1 (#738) Release notes here: https://github.com/JuliaLang/julia/blob/v1.10.0-rc1/NEWS.md Since at this point we don't care about supporting multiple julia versions, I updated everything to 1.10. Marking as a draft since: - [x] Julia 1.10-rc1 needs to be installed on TeamCity - [x] `%env.JULIA_1_10%` needs to be added on TeamCity to point to that install (this PR already attempts to use `JULIA_1_10`) Main reasons I'm excited about 1.10 for Ribasim; mostly for developer experience: - Less latency - Better syntax errors - Shorter stacktraces If people want we can wait for the final release, though its good to start kicking the 1.10 tires at least. --------- Co-authored-by: Hofer-Julian --- .github/workflows/core_tests.yml | 2 +- .github/workflows/docs.yml | 2 +- .../buildTypes/BuildRibasimCliWindows.xml | 8 +- ...basim_RibasimJl_BuildLibribasimWindows.xml | 14 +- Manifest.toml | 233 +++++++++++++++--- build/create_binaries/Project.toml | 2 +- build/libribasim/Project.toml | 2 +- build/ribasim_cli/Project.toml | 2 +- core/Project.toml | 2 +- docs/Project.toml | 2 +- 10 files changed, 210 insertions(+), 59 deletions(-) diff --git a/.github/workflows/core_tests.yml b/.github/workflows/core_tests.yml index 9a2b309dd..28d910b7b 100644 --- a/.github/workflows/core_tests.yml +++ b/.github/workflows/core_tests.yml @@ -17,7 +17,7 @@ jobs: fail-fast: false matrix: julia_version: - - "1.9" + - "~1.10.0-0" os: - ubuntu-latest - macOS-latest diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index a9a39d0b4..222a2df72 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -17,7 +17,7 @@ jobs: strategy: matrix: julia_version: - - "1.9" + - "~1.10.0-0" arch: - x64 steps: diff --git a/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml b/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml index db8d7c89a..8c4302363 100644 --- a/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml +++ b/.teamcity/Ribasim_Ribasim/buildTypes/BuildRibasimCliWindows.xml @@ -9,8 +9,7 @@