From 4abd0cbd31e37431c0b2c537ff583c00e013fff7 Mon Sep 17 00:00:00 2001 From: Bart de Koning Date: Tue, 29 Oct 2024 10:57:57 +0100 Subject: [PATCH] Create plot with Julia in quarto docs --- .gitignore | 1 - docs/Manifest.toml | 1453 ++++++++++ docs/Project.toml | 3 + docs/changelog.qmd | 4 +- docs/model_docs/lateral/sediment_flux.qmd | 3 +- docs/model_docs/vertical/sbm.qmd | 41 +- pixi.lock | 3192 ++++++++++++++++++++- pixi.toml | 1 + 8 files changed, 4590 insertions(+), 108 deletions(-) create mode 100644 docs/Manifest.toml create mode 100644 docs/Project.toml diff --git a/.gitignore b/.gitignore index 9d64d76fc..604242d59 100644 --- a/.gitignore +++ b/.gitignore @@ -13,7 +13,6 @@ # Document generation /docs/build/ /docs/site/ -/docs/Manifest.toml # Temporary files /dev/ diff --git a/docs/Manifest.toml b/docs/Manifest.toml new file mode 100644 index 000000000..f78b5b50e --- /dev/null +++ b/docs/Manifest.toml @@ -0,0 +1,1453 @@ +# This file is machine-generated - editing it directly is 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a/docs/changelog.qmd +++ b/docs/changelog.qmd @@ -367,8 +367,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 `capscale` of the previous approach is not used anymore. #### Fixed -- Conversion of `GroundwaterFlow` boundaries [``m^3 d^{-1}``] as part of model concept - `sbm_gwf` to ``m^3 s^{-1}`` for sub-daily model time steps. For the conversion the +- Conversion of `GroundwaterFlow` boundaries $\SIb{}{m^3 d^{-1}}$ as part of model concept + `sbm_gwf` to $\SI{m^3 s^{-1}}$ for sub-daily model time steps. For the conversion the `basetimestep` (86400 s) should be used (and not the model time step). ### v0.4.1 - 2021-11-04 diff --git a/docs/model_docs/lateral/sediment_flux.qmd b/docs/model_docs/lateral/sediment_flux.qmd index 576f0b835..261682394 100644 --- a/docs/model_docs/lateral/sediment_flux.qmd +++ b/docs/model_docs/lateral/sediment_flux.qmd @@ -286,8 +286,7 @@ Table: Classical values of the channel cover vegetation coefficient (Julian and | Sparse trees | 5.40 | | Dense trees | 19.20 | -Table: Composition of the river bed/bank depending on the median diameter $d_{50}$ -\[$\mu$m\] (Neitsch et al, 2011) +Table: Composition of the river bed/bank depending on the median diameter $\SIb{d_{50}}{\mu m}$ (Neitsch et al, 2011) |Sediment Fraction | $\leq$ 5 | 5 to 50 | 50 to 2000 | $>$ 2000 | | ---- | ---- | ---- | ---- | ---- | diff --git a/docs/model_docs/vertical/sbm.qmd b/docs/model_docs/vertical/sbm.qmd index ed3a50e3e..643f3b06d 100644 --- a/docs/model_docs/vertical/sbm.qmd +++ b/docs/model_docs/vertical/sbm.qmd @@ -416,27 +416,26 @@ and $\SIb{f}{mm^{-1}}$ is a scaling parameter. The plot below shows the relation between soil depth $z$ and saturated hydraulic conductivity $\subtext{K}{sat}$ for different values of $f$. -```@setup plot - using Printf - using CairoMakie -``` - -```@example plot - let # hide - fig = Figure(resolution = (800, 400)) # hide - ax = Axis(fig[1, 1], xlabel = L"K_\mathrm{sat}\;[\mathrm{mm/day}]", ylabel = L"-z\;[\mathrm{mm}]") # hide - -z = 0:5.0:1000 # hide -ksat = 100.0 # hide -f = 0.6 ./ collect(50:150.0:800) # hide - - for fi in f # hide - lines!(ax, ksat .* exp.(-fi .* z), -z, label = @sprintf("%.2e", fi)) # hide - end # hide - - Legend(fig[1, 2], ax, L"f") # hide - fig # hide - end # hide +```{julia} +# | code-fold: true +using Printf +using CairoMakie + +let + fig = Figure(resolution = (800, 400)) + ax = Axis(fig[1, 1], xlabel = L"K_\mathrm{sat}\;[\mathrm{mm/day}]", ylabel = L"-z\;[\mathrm{mm}]") + + z = 0:5.0:1000 + ksat = 100.0 + f = 0.6 ./ collect(50:150.0:800) + + for fi in f + lines!(ax, ksat .* exp.(-fi .* z), -z, label = @sprintf("%.2e", fi)) + end + + Legend(fig[1, 2], ax, L"f") + fig +end ``` With `ksat_profile` "exponential\_constant", $\subtext{K}{sat}$ declines exponentially with soil diff --git a/pixi.lock b/pixi.lock index 2eb64b424..deaa35ab0 100644 --- a/pixi.lock +++ b/pixi.lock @@ -7,44 +7,300 @@ environments: linux-64: - 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