cal_water_do_021122.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "# import geopandas as gpd\n",
    "# import arrow\n",
    "import altair as alt"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Import data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "# Source = https://data.ca.gov/dataset/water-quality-data/resource/82916200-3700-4e3d-83d5-0a3ac6dc31a8\n",
    "file_name = 'field_results'\n",
    "# today = arrow.utcnow().format('MMDDYY')\n",
    "\n",
    "def import_df(file_name):\n",
    "\t# print(today)\n",
    "\ttry:\n",
    "\t\tdf = pd.read_parquet(f'{file_name}.parquet')\n",
    "\texcept Exception as e:\n",
    "\t\t# print(e)\n",
    "\t\tprint(\"Creating Feather file\")\n",
    "\t\tdf = pd.read_csv(f'{file_name}.csv')\n",
    "\t\t# df.to_parquet(f'{file_name}_{today}.parquet')\n",
    "\t\tdf.to_parquet(f'{file_name}.parquet')\n",
    "\n",
    "\treturn df\n",
    "full_df = import_df(file_name)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Select Time Frame"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "(42502, 24)\n"
     ]
    },
    {
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       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>STATION_ID</th>\n",
       "      <th>STATION_NAME</th>\n",
       "      <th>STATION_NUMBER</th>\n",
       "      <th>FULL_STATION_NAME</th>\n",
       "      <th>STATION_TYPE</th>\n",
       "      <th>LATITUDE</th>\n",
       "      <th>LONGITUDE</th>\n",
       "      <th>STATUS</th>\n",
       "      <th>COUNTY_NAME</th>\n",
       "      <th>SAMPLE_CODE</th>\n",
       "      <th>...</th>\n",
       "      <th>ANL_DATA_TYPE</th>\n",
       "      <th>PARAMETER</th>\n",
       "      <th>FDR_RESULT</th>\n",
       "      <th>FDR_TEXT_RESULT</th>\n",
       "      <th>FDR_DATE_RESULT</th>\n",
       "      <th>FDR_REPORTING_LIMIT</th>\n",
       "      <th>UNS_NAME</th>\n",
       "      <th>MTH_NAME</th>\n",
       "      <th>FDR_FOOTNOTE</th>\n",
       "      <th>Month</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>5848</th>\n",
       "      <td>12</td>\n",
       "      <td>H.O. Banks Headworks</td>\n",
       "      <td>KA000331</td>\n",
       "      <td>Delta P.P. Headworks at H.O. Banks PP</td>\n",
       "      <td>Surface Water</td>\n",
       "      <td>37.8019</td>\n",
       "      <td>-121.62</td>\n",
       "      <td>Review Status Unknown</td>\n",
       "      <td>Alameda</td>\n",
       "      <td>D0118B0001</td>\n",
       "      <td>...</td>\n",
       "      <td>None</td>\n",
       "      <td>SpecificConductance</td>\n",
       "      <td>550.0</td>\n",
       "      <td>None</td>\n",
       "      <td>None</td>\n",
       "      <td>1.0</td>\n",
       "      <td>uS/cm@25 °C</td>\n",
       "      <td>EPA 120.1 (Field)</td>\n",
       "      <td>None</td>\n",
       "      <td>2018-01</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5849</th>\n",
       "      <td>12</td>\n",
       "      <td>H.O. Banks Headworks</td>\n",
       "      <td>KA000331</td>\n",
       "      <td>Delta P.P. Headworks at H.O. Banks PP</td>\n",
       "      <td>Surface Water</td>\n",
       "      <td>37.8019</td>\n",
       "      <td>-121.62</td>\n",
       "      <td>Review Status Unknown</td>\n",
       "      <td>Alameda</td>\n",
       "      <td>D0118B0001</td>\n",
       "      <td>...</td>\n",
       "      <td>None</td>\n",
       "      <td>WaterTemperature</td>\n",
       "      <td>10.9</td>\n",
       "      <td>None</td>\n",
       "      <td>None</td>\n",
       "      <td>0.1</td>\n",
       "      <td>°C</td>\n",
       "      <td>EPA 170.1 (Field)</td>\n",
       "      <td>None</td>\n",
       "      <td>2018-01</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>2 rows × 24 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "      STATION_ID          STATION_NAME STATION_NUMBER  \\\n",
       "5848          12  H.O. Banks Headworks       KA000331   \n",
       "5849          12  H.O. Banks Headworks       KA000331   \n",
       "\n",
       "                          FULL_STATION_NAME   STATION_TYPE  LATITUDE  \\\n",
       "5848  Delta P.P. Headworks at H.O. Banks PP  Surface Water   37.8019   \n",
       "5849  Delta P.P. Headworks at H.O. Banks PP  Surface Water   37.8019   \n",
       "\n",
       "      LONGITUDE                 STATUS COUNTY_NAME SAMPLE_CODE  ...  \\\n",
       "5848    -121.62  Review Status Unknown     Alameda  D0118B0001  ...   \n",
       "5849    -121.62  Review Status Unknown     Alameda  D0118B0001  ...   \n",
       "\n",
       "     ANL_DATA_TYPE            PARAMETER  FDR_RESULT FDR_TEXT_RESULT  \\\n",
       "5848          None  SpecificConductance       550.0            None   \n",
       "5849          None     WaterTemperature        10.9            None   \n",
       "\n",
       "     FDR_DATE_RESULT FDR_REPORTING_LIMIT     UNS_NAME           MTH_NAME  \\\n",
       "5848            None                 1.0  uS/cm@25 °C  EPA 120.1 (Field)   \n",
       "5849            None                 0.1           °C  EPA 170.1 (Field)   \n",
       "\n",
       "     FDR_FOOTNOTE    Month  \n",
       "5848         None  2018-01  \n",
       "5849         None  2018-01  \n",
       "\n",
       "[2 rows x 24 columns]"
      ]
     },
     "execution_count": 20,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "def trim_dates(df,years):\n",
    "\tdf_trim = df.loc[pd.to_datetime(df['SAMPLE_DATE']).dt.year.isin(years)]\n",
    "\t# https://docs.python.org/3/library/datetime.html#strftime-and-strptime-behavior\n",
    "\tdf_trim['Month'] = pd.to_datetime(df_trim['SAMPLE_DATE']).dt.strftime('%Y-%m')\n",
    "\t# df_trim['Month'] = pd.to_datetime(df_trim['SAMPLE_DATE']).dt\n",
    "\treturn df_trim\n",
    "\n",
    "df_trim = trim_dates(full_df,[2018,2019,2020,2021,2022])\n",
    "df = df_trim\n",
    "print(df.shape)\n",
    "df.head(2)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Set Criteria"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "    }\n",
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>STATION_NAME</th>\n",
       "      <th>PARAMETER</th>\n",
       "      <th>FDR_RESULT</th>\n",
       "      <th>UNS_NAME</th>\n",
       "      <th>SAMPLE_DATE</th>\n",
       "      <th>SAMPLE_DEPTH</th>\n",
       "      <th>SAMPLE_DEPTH_UNITS</th>\n",
       "      <th>Month</th>\n",
       "      <th>COUNTY_NAME</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>24239</th>\n",
       "      <td>Lake Oroville, Dam</td>\n",
       "      <td>DissolvedOxygen</td>\n",
       "      <td>6.63</td>\n",
       "      <td>mg/L</td>\n",
       "      <td>2021-12-15 09:30:00</td>\n",
       "      <td>3.0</td>\n",
       "      <td>Feet</td>\n",
       "      <td>2021-12</td>\n",
       "      <td>Butte</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24251</th>\n",
       "      <td>Lake Oroville, Dam</td>\n",
       "      <td>DissolvedOxygen</td>\n",
       "      <td>10.50</td>\n",
       "      <td>mg/L</td>\n",
       "      <td>2022-01-19 08:24:00</td>\n",
       "      <td>3.0</td>\n",
       "      <td>Feet</td>\n",
       "      <td>2022-01</td>\n",
       "      <td>Butte</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "             STATION_NAME        PARAMETER  FDR_RESULT UNS_NAME  \\\n",
       "24239  Lake Oroville, Dam  DissolvedOxygen        6.63     mg/L   \n",
       "24251  Lake Oroville, Dam  DissolvedOxygen       10.50     mg/L   \n",
       "\n",
       "               SAMPLE_DATE  SAMPLE_DEPTH SAMPLE_DEPTH_UNITS    Month  \\\n",
       "24239  2021-12-15 09:30:00           3.0               Feet  2021-12   \n",
       "24251  2022-01-19 08:24:00           3.0               Feet  2022-01   \n",
       "\n",
       "      COUNTY_NAME  \n",
       "24239       Butte  \n",
       "24251       Butte  "
      ]
     },
     "execution_count": 21,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "df = df_trim.loc[\n",
    "\t(df_trim['UNS_NAME'] == 'mg/L') & \n",
    "\t(df_trim['SAMPLE_DEPTH_UNITS'] == 'Feet') & \n",
    "\t(df_trim['SAMPLE_DEPTH'] == 3) & \n",
    "\t(df_trim['PARAMETER'] == 'DissolvedOxygen' )]\n",
    "\n",
    "my_headers = ['STATION_NAME','PARAMETER','FDR_RESULT','UNS_NAME','SAMPLE_DATE','SAMPLE_DEPTH','SAMPLE_DEPTH_UNITS','Month','COUNTY_NAME']\n",
    "df[my_headers].head(2)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [],
   "source": [
    "df.to_parquet('DO_data.parquet')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Visualize"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
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San Pablo Bay near Mouth of Petaluma River\", \"STATION_TYPE\": \"Surface Water\", \"LATITUDE\": 38.0847, \"LONGITUDE\": -122.391, \"STATUS\": \"Review Status Unknown\", \"COUNTY_NAME\": \"Sonoma\", \"SAMPLE_CODE\": \"E0721B1262\", \"FDR_CODE\": \"E0721B15370\", \"SAMPLE_DATE\": \"2021-07-22 11:00:00\", \"SAMPLE_DEPTH\": 3.0, \"SAMPLE_DEPTH_UNITS\": \"Feet\", \"ANL_DATA_TYPE\": null, \"PARAMETER\": \"DissolvedOxygen\", \"FDR_RESULT\": 7.59, \"FDR_TEXT_RESULT\": null, \"FDR_DATE_RESULT\": null, \"FDR_REPORTING_LIMIT\": 0.1, \"UNS_NAME\": \"mg/L\", \"MTH_NAME\": \"ASTM Method D888-09-C (Field)\", \"FDR_FOOTNOTE\": null, \"Month\": \"July 2021\"}, {\"STATION_ID\": 45939, \"STATION_NAME\": \"D41A\", \"STATION_NUMBER\": \"E0B80512234\", \"FULL_STATION_NAME\": \"D41A - San Pablo Bay near Mouth of Petaluma River\", \"STATION_TYPE\": \"Surface Water\", \"LATITUDE\": 38.0847, \"LONGITUDE\": -122.391, \"STATUS\": \"Review Status Unknown\", \"COUNTY_NAME\": \"Sonoma\", \"SAMPLE_CODE\": \"E0821B1504\", \"FDR_CODE\": \"E0821B18881\", \"SAMPLE_DATE\": \"2021-08-20 11:00:00\", \"SAMPLE_DEPTH\": 3.0, \"SAMPLE_DEPTH_UNITS\": \"Feet\", \"ANL_DATA_TYPE\": null, \"PARAMETER\": \"DissolvedOxygen\", \"FDR_RESULT\": 7.26, \"FDR_TEXT_RESULT\": null, \"FDR_DATE_RESULT\": null, \"FDR_REPORTING_LIMIT\": 0.1, \"UNS_NAME\": \"mg/L\", \"MTH_NAME\": \"ASTM Method D888-09-C (Field)\", \"FDR_FOOTNOTE\": null, \"Month\": \"August 2021\"}, {\"STATION_ID\": 45939, \"STATION_NAME\": \"D41A\", \"STATION_NUMBER\": \"E0B80512234\", \"FULL_STATION_NAME\": \"D41A - San Pablo Bay near Mouth of Petaluma River\", \"STATION_TYPE\": \"Surface Water\", \"LATITUDE\": 38.0847, \"LONGITUDE\": -122.391, \"STATUS\": \"Review Status Unknown\", \"COUNTY_NAME\": \"Sonoma\", \"SAMPLE_CODE\": \"E0921B1746\", \"FDR_CODE\": \"E0921B25507\", \"SAMPLE_DATE\": \"2021-09-17 09:40:00\", \"SAMPLE_DEPTH\": 3.0, \"SAMPLE_DEPTH_UNITS\": \"Feet\", \"ANL_DATA_TYPE\": null, \"PARAMETER\": \"DissolvedOxygen\", \"FDR_RESULT\": 7.5, \"FDR_TEXT_RESULT\": null, \"FDR_DATE_RESULT\": null, \"FDR_REPORTING_LIMIT\": 0.1, \"UNS_NAME\": \"mg/L\", \"MTH_NAME\": \"ASTM Method D888-09-C (Field)\", \"FDR_FOOTNOTE\": null, \"Month\": \"September 2021\"}, {\"STATION_ID\": 45939, \"STATION_NAME\": \"D41A\", \"STATION_NUMBER\": \"E0B80512234\", \"FULL_STATION_NAME\": \"D41A - San Pablo Bay near Mouth of Petaluma River\", \"STATION_TYPE\": \"Surface Water\", \"LATITUDE\": 38.0847, \"LONGITUDE\": -122.391, \"STATUS\": \"Review Status Unknown\", \"COUNTY_NAME\": \"Sonoma\", \"SAMPLE_CODE\": \"E1021B1988\", \"FDR_CODE\": \"E1021B27972\", \"SAMPLE_DATE\": \"2021-10-19 11:00:00\", \"SAMPLE_DEPTH\": 3.0, \"SAMPLE_DEPTH_UNITS\": \"Feet\", \"ANL_DATA_TYPE\": null, \"PARAMETER\": \"DissolvedOxygen\", \"FDR_RESULT\": 7.37, \"FDR_TEXT_RESULT\": null, \"FDR_DATE_RESULT\": null, \"FDR_REPORTING_LIMIT\": 0.1, \"UNS_NAME\": \"mg/L\", \"MTH_NAME\": \"ASTM Method D888-09-C (Field)\", \"FDR_FOOTNOTE\": null, \"Month\": \"October 2021\"}, {\"STATION_ID\": 45939, \"STATION_NAME\": \"D41A\", \"STATION_NUMBER\": \"E0B80512234\", \"FULL_STATION_NAME\": \"D41A - San Pablo Bay near Mouth of Petaluma River\", \"STATION_TYPE\": \"Surface Water\", \"LATITUDE\": 38.0847, \"LONGITUDE\": -122.391, \"STATUS\": \"Review Status Unknown\", \"COUNTY_NAME\": \"Sonoma\", \"SAMPLE_CODE\": \"E1121B2228\", \"FDR_CODE\": \"E1121B31481\", \"SAMPLE_DATE\": \"2021-11-17 10:55:00\", \"SAMPLE_DEPTH\": 3.0, \"SAMPLE_DEPTH_UNITS\": \"Feet\", \"ANL_DATA_TYPE\": null, \"PARAMETER\": \"DissolvedOxygen\", \"FDR_RESULT\": 7.62, \"FDR_TEXT_RESULT\": null, \"FDR_DATE_RESULT\": null, \"FDR_REPORTING_LIMIT\": 0.1, \"UNS_NAME\": \"mg/L\", \"MTH_NAME\": \"ASTM Method D888-09-C (Field)\", \"FDR_FOOTNOTE\": null, \"Month\": \"November 2021\"}, {\"STATION_ID\": 45939, \"STATION_NAME\": \"D41A\", \"STATION_NUMBER\": \"E0B80512234\", \"FULL_STATION_NAME\": \"D41A - San Pablo Bay near Mouth of Petaluma River\", \"STATION_TYPE\": \"Surface Water\", \"LATITUDE\": 38.0847, \"LONGITUDE\": -122.391, \"STATUS\": \"Review Status Unknown\", \"COUNTY_NAME\": \"Sonoma\", \"SAMPLE_CODE\": \"E1221B2359\", \"FDR_CODE\": \"E1221B43280\", \"SAMPLE_DATE\": \"2021-12-16 09:35:00\", \"SAMPLE_DEPTH\": 3.0, \"SAMPLE_DEPTH_UNITS\": \"Feet\", \"ANL_DATA_TYPE\": null, \"PARAMETER\": \"DissolvedOxygen\", \"FDR_RESULT\": 9.0, \"FDR_TEXT_RESULT\": null, \"FDR_DATE_RESULT\": null, \"FDR_REPORTING_LIMIT\": 0.1, \"UNS_NAME\": \"mg/L\", \"MTH_NAME\": \"ASTM Method D888-09-C (Field)\", \"FDR_FOOTNOTE\": null, \"Month\": \"December 2021\"}]}}, {\"mode\": \"vega-lite\"});\n",
       "</script>"
      ],
      "text/plain": [
       "alt.Chart(...)"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "base = alt.Chart(df).properties(width=700,height=300)\n",
    "\n",
    "selection = alt.selection_multi(fields=['STATION_NAME'], bind='legend')\n",
    "\n",
    "dots = base.mark_point(size=30).encode(\n",
    "    # x=alt.X('Month',title='Month'),\n",
    "    x=alt.X('SAMPLE_DATE',title='Month'),\n",
    "    y=alt.Y('FDR_RESULT',title='Dissolved Oxygen (mg/L)'),\n",
    "    shape=alt.Shape('COUNTY_NAME',title='County'),\n",
    "    color=alt.Color('STATION_NAME',title='Station Name'),\n",
    "    opacity=alt.condition(selection, alt.value(1), alt.value(0.2)),\n",
    "    size=alt.condition(selection, alt.value(50), alt.value(5)),\n",
    "    tooltip=my_headers\n",
    ").add_selection(selection).interactive()\n",
    "dots\n"
   ]
  }
 ],
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   "display_name": "Python 3.9.10 ('gis')",
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