From e795b738a0509e29f346309d5621da0355414cf5 Mon Sep 17 00:00:00 2001 From: parduino Date: Mon, 16 Dec 2024 17:37:09 -0800 Subject: [PATCH] Changes to parduino usecase (#104) * Adding changes to Pedro Arduino * Cleaning files in Arduino use_case * Small change to matlab case - Arduino useCase * small changes to P Arduino use case * small change to figures * small change to figure * small change to figure * small change to figure * Remove all equations in text, and remove notebook * small changes * fix: horizontal rule markup invalid * adding files referenced in text * Making changes to jupyter notebooks --------- Co-authored-by: Wesley B <62723358+wesleyboar@users.noreply.github.com> --- user-guide/docs/usecases/arduino/usecase.md | 8 ++++---- user-guide/docs/usecases/arduino/usecase_quoFEM.md | 8 ++++---- user-guide/docs/usecases/arduino/usecase_siteResponse.md | 2 +- 3 files changed, 9 insertions(+), 9 deletions(-) diff --git a/user-guide/docs/usecases/arduino/usecase.md b/user-guide/docs/usecases/arduino/usecase.md index c1aa6d3f..93862b94 100644 --- a/user-guide/docs/usecases/arduino/usecase.md +++ b/user-guide/docs/usecases/arduino/usecase.md @@ -21,15 +21,15 @@ The following Jupyter notebooks are made available to facilitate the analysis of | Site Response | Notebook | | :-------: | :---------: | -| FreeField Response | freeFieldJupyterPM4Sand_Community.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/freeFieldJupyterPM4Sand/freeFieldJupyterPM4Sand_Community.ipynb) | +| FreeField Response | freeFieldJupyterPM4Sand_Community.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/freeFieldJupyterPM4Sand/freeFieldJupyterPM4Sand_Community-TAPISV3.ipynb) | --- | quoFEM | Notebook | | :-------: | :---------: | -| Sensitivity analysis | quoFEM-Sensitivity.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM_Example1/GlobalSensitivity/quoFEM-Sensitivity.ipynb)| -| Bayessian calibration | quoFEM-Bayesian.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM_Example1/BayesianCalibration/quoFEM-Bayesian.ipynb)| -| Forward propagation | quoFEM-Propagation.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM_Example1/ForwardPropagation/quoFEM-Propagation.ipynb)| +| Sensitivity analysis | quoFEM-Sensitivity.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM-Example1-TAPISV3/GlobalSensitivity/quoFEM-Sensitivity-TAPISV3.ipynb)| +| Bayessian calibration | quoFEM-Bayesian.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM-Example1-TAPISV3/BayesianCalibration/quoFEM-Bayesian-TAPISV3.ipynb)| +| Forward propagation | quoFEM-Propagation.ipynb
[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM-Example1-TAPISV3/ForwardPropagation/quoFEM-Propagation-TAPISV3.ipynb)| #### DesignSafe Resources diff --git a/user-guide/docs/usecases/arduino/usecase_quoFEM.md b/user-guide/docs/usecases/arduino/usecase_quoFEM.md index 707183da..9d375ae4 100644 --- a/user-guide/docs/usecases/arduino/usecase_quoFEM.md +++ b/user-guide/docs/usecases/arduino/usecase_quoFEM.md @@ -16,9 +16,9 @@ This example makes use of the following DesignSafe resources: | Step | Notebook | | :-------: | :---------: | -| Sensitivity analysis | [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM_Example1/GlobalSensitivity/quoFEM-Sensitivity.ipynb)| -| Bayessian calibration | [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM_Example1/BayesianCalibration/quoFEM-Bayesian.ipynb)| -| Forward propagation | [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM_Example1/ForwardPropagation/quoFEM-Propagation.ipynb)| +| Sensitivity analysis | [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM-Example1-TAPISV3/GlobalSensitivity/quoFEM-Sensitivity-TAPISV3.ipynb)| +| Bayessian calibration | [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM-Example1-TAPISV3/BayesianCalibration/quoFEM-Bayesian-TAPISV3.ipynb)| +| Forward propagation | [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/quoFEM-Example1-TAPISV3/ForwardPropagation/quoFEM-Propagation-TAPISV3.ipynb)| The notebooks, and required scripts, are available in the Community Data folder and can be executed without any modification. Users are invited to try this notebook and use any parts of it. @@ -62,7 +62,7 @@ In order to facilitate the discussion of each notebook, it is helpful to first i 3. Run Tapis job 4. Post-process results -Instructions for (1) setting up and (2) running Tapis jobs can be found [here](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/freeFieldJupyterPM4Sand/freeFieldJupyterPM4Sand_Community.ipynb). These steps are generally applicable for launching any Tapis app from a Jupyter notebook in DesignSafe. The most significant step in this process is determining the appropriate Tapis app to utilize. To perform uncertainty quantification within SimCenter backend applications, the following Tapis app is used: +Instructions for (1) setting up and (2) running Tapis jobs can be found [here](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/freeFieldJupyterPM4Sand/freeFieldJupyterPM4Sand_Community-TAPISV3.ipynb). These steps are generally applicable for launching any Tapis app from a Jupyter notebook in DesignSafe. The most significant step in this process is determining the appropriate Tapis app to utilize. To perform uncertainty quantification within SimCenter backend applications, the following Tapis app is used: ``` python #Select tapis-app diff --git a/user-guide/docs/usecases/arduino/usecase_siteResponse.md b/user-guide/docs/usecases/arduino/usecase_siteResponse.md index 388a79cf..f63b6f56 100644 --- a/user-guide/docs/usecases/arduino/usecase_siteResponse.md +++ b/user-guide/docs/usecases/arduino/usecase_siteResponse.md @@ -8,7 +8,7 @@ This example makes use of the following DesignSafe resources: -[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/freeFieldJupyterPM4Sand/freeFieldJupyterPM4Sand_Community.ipynb) +[![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Jupyter%20Notebooks%20for%20Civil%20Engineering%20Courses/University_of_Washington/freeFieldJupyterPM4Sand/freeFieldJupyterPM4Sand_Community-TAPISV3.ipynb) The notebook, and required scripts, are available in the Community Data folder and can be executed without any modification. Users are invited to try this notebook and use any parts of it.