Merge branch 'main' into feat/edit-on-github

DesignSafe-CI · Nov 19, 2024 · fbb37a5 · fbb37a5
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diff --git a/bin/tacc-setup.sh b/bin/tacc-setup.sh
@@ -2,7 +2,7 @@
 
 # To provide files via a CDN from a specific repo at a specific commit-ish
 # https://github.com/DesignSafe-CI/DS-User-Guide/pull/14
-BASE_URL="https://cdn.jsdelivr.net/gh/DesignSafe-CI/DS-User-Guide@016dcda"
+BASE_URL="https://cdn.jsdelivr.net/gh/DesignSafe-CI/DS-User-Guide@624d01be"
 
 # To avoid the error:
 # > ERROR - Config value 'theme': The path set in custom_dir

diff --git a/user-guide/docs/usecases/brandenberg-ngl/usecase.md b/user-guide/docs/usecases/brandenberg-ngl/usecase.md
@@ -87,8 +87,7 @@ This notebook contains example queries to illustrate how to extract data from th
 5. Query information about BORH table
 6. Query counts of cone penetration test data, boreholes, surface wave measurements, invasive shear wave velocity measurements, liquefaction observations, and non-liquefaction observations
 
-Open in Jupyter Notebook: [ExampleQueries.ipynb]( https://jupyter.designsafe-ci.org/hub/user-redirect/notebooks/CommunityData/NGL/ExampleQueries.ipynb){target=_blank}<br/>
-Open in Jupyter Lab: [ExampleQueries.ipynb]( https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/ExampleQueries.ipynb){target=_blank}
+Open in Jupyter Notebook: [ExampleQueries.ipynb]( https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/ExampleQueries.ipynb){target=_blank}
 
 ### Cone Penetration Test Viewer
 
@@ -103,8 +102,7 @@ The cone penetration test viewer demonstrates the following:
 
 Cone penetration test data plotted in the notebook include tip resistance, sleeve friction, and pore pressure. In some cases, sleeve friction and pore pressure are not measured, in which case the plots are empty.
 
-Open in Jupyter Notebook: [CPT_viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/notebooks/CommunityData/NGL/CPT_viewer.ipynb){target=_blank}<br/>
-Open in Jupyter Lab: [CPT_viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/CPT_viewer.ipynb){target=_blank}
+Open in Jupyter Notebook: [CPT_viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/CPT_viewer.ipynb){target=_blank}
 
 
 ### V<sub>S</sub> (Invasive) Test Viewer
@@ -118,8 +116,7 @@ The V<sub>s</sub> (Invasive) Test Viewer demonstrates the following:
 5. Using the ipywidgets "observe" feature to call functions when users select a widget value
 6. Plotting data from the selected invasive geophysical test using matplotlib
 
-Open in Jupyter Notebook: [VS_Invasive_viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/notebooks/CommunityData/NGL/VS_Invasive_viewer.ipynb){target=_blank}<br/>
-Open in Jupyter Lab: [VS_Invasive_viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/VS_Invasive_viewer.ipynb){target=_blank}
+Open in Jupyter Notebook: [VS_Invasive_viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/VS_Invasive_viewer.ipynb){target=_blank}
 
 
 ### October 2021 DesignSafe Webinar
@@ -134,8 +131,7 @@ The notebook demonstrates the following:
 
 Cone penetration test data plotted in the notebook include tip resistance, sleeve friction, and pore pressure. In some cases, sleeve friction and pore pressure are not measured, in which case the plots are empty.
 
-Open in Jupyter Notebook: [DesignSafe_Webinar_Oct2021.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/notebooks/CommunityData/NGL/DesignSafe_Webinar_Oct2021.ipynb){target=_blank}<br/>
-Open in Jupyter Lab: [DesignSafe_Webinar_Oct2021.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/DesignSafe_Webinar_Oct2021.ipynb){target=_blank}
+Open in Jupyter Notebook: [DesignSafe_Webinar_Oct2021.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/DesignSafe_Webinar_Oct2021.ipynb){target=_blank}
 
 [DesignSafe Webinar YouTube video](https://youtu.be/TNOPOU4lx5w){target=_blank}
 
@@ -153,5 +149,4 @@ The Direct Simple Shear Laboratory Test Viewer is a graphical interface that plo
 
 Direct simple shear data plotted in the notebook include shear stress, shear strain, vertical stress, and vertical strain time series in the first plot. The second plot displays shear strain and void ratio versus vertical stress and void ratio, shear stress, and vertical stress ratio versus shear strain.
 
-Open in Jupyter Notebook: [DSS_Viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/notebooks/CommunityData/NGL/DSS_Viewer.ipynb){target=_blank}<br/>
-Open in Jupyter Lab: [DSS_Viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/DSS_Viewer.ipynb){target=_blank}
+Open in Jupyter Notebook: [DSS_Viewer.ipynb](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/NGL/DSS_Viewer.ipynb){target=_blank}
diff --git a/user-guide/docs/usecases/rathje/usecase.md b/user-guide/docs/usecases/rathje/usecase.md
@@ -20,10 +20,10 @@ This use case example shows how to run an OpenSeesMP analysis on the high-perfor
 #### Jupyter Notebooks
 The following Jupyter notebooks are available to facilitate the analysis of each case. They are described in details in this section. You can access and run them directly on DesignSafe by clicking on the "Open in DesignSafe" button.
 
-| Scope | Jupyter Notebook | Jupyter Lab |
+| Scope | Jupyter Notebook |
 | :-------: | :---------:  | :---------:  |
-| Submit job to STKO-compatible OpenSees | SSI_MainDriver.ipynb <br> [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/notebooks/CommunityData/Use%20Case%20Products/OpenSees-STKO/SSI_MainDriver.ipynb){:target="_blank"} | SSI_MainDriver.ipynb <br> [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Use%20Case%20Products/OpenSees-STKO/SSI_MainDriver.ipynb){:target="_blank"} |
-| Post-Processing in Jupyter | Example post-processing scripts.ipynb <br> [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/notebooks/CommunityData/Use%20Case%20Products/OpenSees-STKO/Example%20post-processing%20scripts.ipynb){:target="_blank"} | Example post-processing scripts.ipynb <br> [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Use%20Case%20Products/OpenSees-STKO/Example%20post-processing%20scripts.ipynb){:target="_blank"} |
+| Submit job to STKO-compatible OpenSees | SSI_MainDriver.ipynb <br> [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Use%20Case%20Products/OpenSees-STKO/SSI_MainDriver.ipynb){:target="_blank"} |
+| Post-Processing in Jupyter | Example post-processing scripts.ipynb <br> [![Open In DesignSafe](https://raw.githubusercontent.com/geoelements/LearnMPM/main/DesignSafe-Badge.svg)](https://jupyter.designsafe-ci.org/hub/user-redirect/lab/tree/CommunityData/Use%20Case%20Products/OpenSees-STKO/Example%20post-processing%20scripts.ipynb){:target="_blank"} |
 
 #### DesignSafe Resources
 The following DesignSafe resources were used in developing this use case.