Enhancements:
- Added more demo notebooks
- Support for newer versions of certain Python dependencies (ipykernel, notebook, pyzmq and tornado)
realtimePlot
(akaruntimePlot
) is also available formultiController
. However, this is available only whenshareAxes
isFalse
or when therealtimePlot
is the first view to be plotted. Other cases cannot be supported at the moment.- Added possibility to use the graphical keywords (
xlab
,ylab
,fontsize
,legend_loc
,legend_fontsize
,choose_xrange
,choose_yrange
) on all commands. - Added analysis to Variance suppression notebook
Enhancements:
- Various documentation improvements
- Added another demo notebook
- Show id of Figure objects in field views
- Added possibility to have initial state >1 for
integrate()
andbifurcation()
Formultiagent()
andSSA()
the widgets are still limited to the sum of 1 - Replace
latex2sympy
'sprocess_sympy
withsympy
'sparse_latex
- Update docs to state Python >=3.6 required
- Refactor MuMoT into separate modules this sets the length of time over which streams are integrated
numPoints
added as keyword to 3D stream plot to set number of streams plotted- 3D stream plot now plots streams from random subset of starting points
- 3D stream plot shading now based on velocity (calculated from line segment length)
- 1D stream added
- 3D stream added
Bug fixes:
- Guard against
iopub
rate limiting warnings - Increase
nbval
cell exec timeout - Suppress
matplotlib
deprecation warning in nested multicontrollers - Sum to 1 for all views; implement warnings correctly
- Patched issue for 1D models
- Patched issue with multiController
- Fixed exceptions for stochastic analysis methods
- Fixed widgets for rates with equation
- Patched SSA bug
- First release