No additionalProperties, add @id and added examples

DiSSCo · Jun 4, 2024 · 3e8aa85 · 3e8aa85
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diff --git a/data-model/fdo-types/0.3.0/digital-specimens/examples/aves-example.json b/data-model/fdo-types/0.3.0/digital-specimens/examples/aves-example.json
diff --git a/data-model/fdo-types/0.3.0/digital-specimens/examples/chronometric-age-example.json b/data-model/fdo-types/0.3.0/digital-specimens/examples/chronometric-age-example.json
@@ -0,0 +1,12 @@
+{
+  "@id": "7cd7b542-5053-4d9c-a698-ff4f9f6e6fd0",
+  "@type": "ods:ChronometricAge",
+  "chrono:chronometricAgeID": "7cd7b542-5053-4d9c-a698-ff4f9f6e6fd0",
+  "chrono:uncalibratedChronometricAge": "150 BP",
+  "chrono:earliestChronometricAge": 2500,
+  "chrono:earliestChronometricAgeReferenceSystem": "BP",
+  "chrono:latestChronometricAge": 3000,
+  "chrono:latestChronometricAgeReferenceSystem": "BP",
+  "chrono:chronometricAgeUncertaintyInYears": 500,
+  "chrono:materialDated": "Potery"
+}
diff --git a/data-model/fdo-types/0.3.0/digital-specimens/examples/digital-specimen-bare.json b/data-model/fdo-types/0.3.0/digital-specimens/examples/digital-specimen-bare.json
@@ -0,0 +1,127 @@
+{
+  "@id": "https://doi.org/SANDBOX/XY7-ZMP-5J4",
+  "@type": "ods:DigitalSpecimen",
+  "ods:version": 1,
+  "ods:created": "2024-05-29T07:10:56.269509Z",
+  "ods:type": "https://doi.org/21.T11148/894b1e6cad57e921764e",
+  "ods:midsLevel": 1,
+  "ods:normalisedPhysicalSpecimenID": "https://data.biodiversitydata.nl/naturalis/specimen/RMNH.AVES.121559",
+  "ods:physicalSpecimenID": "https://data.biodiversitydata.nl/naturalis/specimen/RMNH.AVES.121559",
+  "ods:physicalSpecimenIDType": "Resolvable",
+  "ods:topicOrigin": "Natural",
+  "ods:topicDomain": "Life",
+  "ods:topicDiscipline": "Zoology",
+  "ods:isKnownToContainMedia": true,
+  "ods:specimenName": "Pitta versicolor Swainson, 1825",
+  "ods:sourceSystemID": "https://hdl.handle.net/SANDBOX/CS1-ZKQ-NZ7",
+  "ods:livingOrPreserved": "Preserved",
+  "dcterms:license": "CC0 1.0",
+  "dcterms:modified": "2023/01/24",
+  "dwc:basisOfRecord": "PreservedSpecimen",
+  "dwc:preparations": "skin (air dried)",
+  "dwc:institutionID": "https://ror.org/0566bfb96",
+  "dwc:institutionName": "Naturalis Biodiversity Center",
+  "dwc:recordedBy": "van Lansberge",
+  "dwc:datasetName": "Naturalis Biodiversity Center (NL) - Aves",
+  "dcterms:rightsHolder": "Naturalis Biodiversity Center",
+  "ods:hasMaterialEntity": [],
+  "ods:hasIdentification": [
+    {
+      "@type": "dwc:Identification",
+      "dwc:verbatimIdentification": "Pitta versicolor concinna Gould, 1857",
+      "dwc:identifiedBy": "Tan D.",
+      "dwc:dateIdentified": "2021/12/01",
+      "dwc:identificationVerificationStatus": true,
+      "ods:hasTaxonIdentification": [
+        {
+          "@type": "ods:TaxonIdentification",
+          "dwc:taxonID": "6VM3W",
+          "dwc:scientificName": "Pitta versicolor Swainson, 1825",
+          "ods:scientificNameHtmlLabel": "<i>Pitta versicolor</i> Swainson, 1825",
+          "dwc:scientificNameAuthorship": "Swainson, 1825",
+          "dwc:namePublishedInYear": "1825",
+          "dwc:taxonRank": "SPECIES",
+          "dwc:kingdom": "Animalia",
+          "dwc:phylum": "Chordata",
+          "dwc:class": "Aves",
+          "dwc:order": "Passeriformes",
+          "dwc:family": "Pittidae",
+          "dwc:genus": "Pitta Vieillot, 1816",
+          "dwc:specificEpithet": "versicolor",
+          "dwc:taxonomicStatus": "ACCEPTED",
+          "dwc:nomenclaturalCode": "ICZN",
+          "dwc:genericName": "Pitta"
+        }
+      ]
+    }
+  ],
+  "ods:hasAssertion": [],
+  "ods:hasEvents": [
+    {
+      "@type": "ods:Event",
+      "dwc:organismQuantity": "1",
+      "dwc:organismQuantityType": "individuals",
+      "dwc:lifeStage": "adult",
+      "dwc:eventDate": "1880-09-01/1880-09-30",
+      "ods:Assertions": [],
+      "dcterms:Location": {
+        "dwc:stateProvince": "Alor",
+        "ods:GeoReference": {
+          "dwc:geodeticDatum": "WGS84"
+        },
+        "ods:GeologicalContext": {}
+      }
+    }
+  ],
+  "ods:hasEntityRelationship": [
+    {
+      "@type": "ods:EntityRelationship",
+      "ods:entityRelationshipType": "hasOrganisationId",
+      "ods:objectEntityIri": "https://ror.org/0566bfb96"
+    },
+    {
+      "@type": "ods:EntityRelationship",
+      "ods:entityRelationshipType": "hasSourceSystemId",
+      "ods:objectEntityIri": "https://hdl.handle.net/SANDBOX/CS1-ZKQ-NZ7"
+    },
+    {
+      "@type": "ods:EntityRelationship",
+      "ods:entityRelationshipType": "hasFdoType",
+      "ods:objectEntityIri": "https://doi.org/21.T11148/894b1e6cad57e921764e"
+    },
+    {
+      "@type": "ods:EntityRelationship",
+      "ods:entityRelationshipType": "hasPhysicalIdentifier",
+      "ods:objectEntityIri": "https://data.biodiversitydata.nl/naturalis/specimen/RMNH.AVES.121559"
+    },
+    {
+      "@type": "ods:EntityRelationship",
+      "ods:entityRelationshipType": "hasColId",
+      "ods:objectEntityIri": "https://www.catalogueoflife.org/data/taxon/6VM3W",
+      "ods:entityRelationshipDate": 1716966655568,
+      "ods:entityRelationshipCreatorName": "dissco-nusearch-service",
+      "ods:entityRelationshipCreatorId": "https://hdl.handle.net/TEST/123-123-123"
+    }
+  ],
+  "ods:hasCitation": [
+    {}
+  ],
+  "ods:hasIdentifier": [
+    {
+      "@type": "ods:Identifier",
+      "ods:identifierType": "dwc:occurrenceID",
+      "ods:identifierValue": "https://data.biodiversitydata.nl/naturalis/specimen/RMNH.AVES.121559"
+    },
+    {
+      "@type": "ods:Identifier",
+      "ods:identifierType": "dwca:ID",
+      "ods:identifierValue": "RMNH.AVES.121559@CRS"
+    },
+    {
+      "@type": "ods:Identifier",
+      "ods:identifierType": "dwc:catalogNumber",
+      "ods:identifierValue": "RMNH.AVES.121559"
+    }
+  ],
+  "ods:hasChronometricAge": []
+}
diff --git a/data-model/fdo-types/0.3.0/digital-specimens/examples/event-example.json b/data-model/fdo-types/0.3.0/digital-specimens/examples/event-example.json
@@ -0,0 +1,14 @@
+{
+  "@type": "dwc:Event",
+  "dwc:organismQuantity": "2",
+  "dwc:organismQuantityType": "individuals",
+  "dwc:sex": "male",
+  "dwc:lifeStage": "young",
+  "dwc:vitality": "dead",
+  "ods:eventName": "A nice name for an Event",
+  "dwc:recordNumber": "Important for MIDS",
+  "dwc:eventDate": "1963-03-08T14:07-0600",
+  "dwc:year": 1963,
+  "dwc:month": 3,
+  "dwc:day": 8
+}
diff --git a/data-model/fdo-types/0.3.0/digital-specimens/examples/identification.json b/data-model/fdo-types/0.3.0/digital-specimens/examples/identification.json
@@ -0,0 +1,31 @@
+{
+  "@id": "1de006de-f809-476f-b344-570dd8965fc2",
+  "@type": "dwc:Identification",
+  "dwc:identificationID": "1de006de-f809-476f-b344-570dd8965fc2",
+  "ods:identificationType": "Taxon",
+  "dwc:typeStatus": "holotype",
+  "dwc:identifiedBy": "Sam Leeflang",
+  "dwc:identifiedByID": "https://orcid.org/0000-0002-5669-2769",
+  "dwc:identificationVerificationStatus": true,
+  "ods:hasTaxonIdentification": [
+    {
+      "@id": "https://www.catalogueoflife.org/data/taxon/4YJSY",
+      "@type": "ods:TaxonIdentification",
+      "dwc:taxonID": "https://www.catalogueoflife.org/data/taxon/4YJSY",
+      "dwc:scientificName": "Spermacoce hirsuta Willd.",
+      "ods:scientificNameHtmlLabel": "<i>Spermacoce hirsuta</i> Willd.",
+      "dwc:scientificNameAuthorship": "Willd.",
+      "dwc:taxonRank": "SPECIES",
+      "dwc:kingdom": "Plantae",
+      "dwc:phylum": "Tracheophyta",
+      "dwc:class": "Magnoliopsida",
+      "dwc:order": "Gentianales Juss. ex Bercht. & J. Presl",
+      "dwc:family": "Rubiaceae",
+      "dwc:genus": "Richardia L.",
+      "dwc:specificEpithet": "hirsuta",
+      "dwc:taxonomicStatus": "SYNONYM",
+      "dwc:acceptedNameUsage": "Richardia scabra L.",
+      "dwc:acceptedNameUsageID": "4SZKV"
+    }
+  ]
+}
diff --git a/data-model/fdo-types/0.3.0/digital-specimens/examples/location-example.json b/data-model/fdo-types/0.3.0/digital-specimens/examples/location-example.json
@@ -0,0 +1,19 @@
+{
+  "@type": "dcterms:Location",
+  "dwc:continent": "Europe",
+  "dwc:country": "Netherlands",
+  "dwc:countryCode": "NL",
+  "dwc:stateProvince": "Drente",
+  "dwc:municipality": "Annen",
+  "ods:GeoReference": {
+    "@type": "ods:GeoReference",
+    "dwc:decimalLatitude": 53.056073,
+    "dwc:decimalLongitude": 6.722291,
+    "dwc:geodeticDatum": "WGS84"
+  },
+  "dwc:GeologicalContext": {
+    "@type": "dwc:GeologicalContext",
+    "dwc:group": "Bathurst",
+    "dwc:formation": "Summerville"
+  }
+}
diff --git a/data-model/fdo-types/0.3.0/digital-specimens/examples/material-entity-example.json b/data-model/fdo-types/0.3.0/digital-specimens/examples/material-entity-example.json
@@ -0,0 +1,7 @@
+{
+  "@id": "06809dc5-f143-459a-be1a-6f03e63fc083",
+  "@type": "ods:MaterialEntity",
+  "dwc:materialEntityID": "06809dc5-f143-459a-be1a-6f03e63fc083",
+  "ods:materialEntityType": "organism",
+  "dwc:preparations": "dried sheet"
+}
diff --git a/data-model/fdo-types/0.3.0/digital-specimens/schema/chronometric-age.json b/data-model/fdo-types/0.3.0/digital-specimens/schema/chronometric-age.json
@@ -4,6 +4,15 @@
   "$comment": "DigitalObject Version 0.3.0",
   "type": "object",
   "properties": {
+    "@id": {
+      "type": "string",
+      "description": "The identifier for the digital object."
+    },
+    "@type": {
+      "type": "string",
+      "const": "ods:ChronometricAge",
+      "description": "The type of the digital object."
+    },
     "chrono:chronometricAgeID": {
       "type": "string",
       "description": "https://rs.tdwg.org/chrono/terms/chronometricAgeID",
@@ -127,5 +136,9 @@
         "Beta Analytic number: 323913"
       ]
     }
-  }
+  },
+  "required": [
+    "@type"
+  ],
+  "additionalProperties": false
 }