Version 1.3.4

What's Changed

• Fix divide zero guard by @manthey in #1101

Full Changelog: v1.3.3...v1.3.4

Version 1.3.3

What's Changed

• Guard against division by zero by @manthey in #1099
• Nuclei detection should be more stable across regions by @manthey in #1100

Full Changelog: v1.3.2...v1.3.3

Version 1.3.2

What's Changed

• Tutorial on creating random forest classifier by @subinkitware in #1052
• Don't serialize some options to json by @manthey in #1097

Full Changelog: v1.3.1...v1.3.2

Version 1.3.1

What's Changed

• Fix a format string. by @manthey in #1078
• Guard empty list by @manthey in #1079
• Nuclei classification can run without feature / annotation files by @subinkitware in #1051
• Compact Nuclei Notation by @subinkitware in #1083
• Improve linting and consistency by @manthey in #1084

Full Changelog: v1.3.0...v1.3.1

Version 1.3.0

What's Changed

• Only release with github actions. by @manthey in #1068
• Tutorial nuclei classification by @subinkitware in #1050
• Use the common exta_requires on non-linux platforms by @manthey in #1072
• synced nuclei features and nuclei detection. by @subinkitware in #1070
• Test more of the CLI code. by @manthey in #1073
• Update some tests to handle minor version changes by @manthey in #1074
• Update tests for Python 3.12 by @manthey in #1075
• Bump actions/checkout from 3 to 4 by @dependabot in #1077
• Bump python from 3.11-slim to 3.12-slim by @dependabot in #1076

New Contributors

• @dependabot made their first contribution in #1077

Full Changelog: v1.2.10...v1.3.0

Version 1.2.10

What's Changed

• Use github actions to build wheels. by @manthey in #1060
• supress rank warning by @subinkitware in #1059
• Don't use a futures pool to compute polygons. by @manthey in #1062

Full Changelog: v1.2.9...v1.2.10

Version 1.2.9

What's Changed

• Improve repeatability of tox docs process. by @manthey in #1010
• Expose the version number as histomicstk.version by @manthey in #1013
• added tile overlap parameter by @subinkitware in #1009
• Adjust for Cython 3 by @manthey in #1022
• NucleiClassification - added attributes to the annotation file. by @subinkitware in #1014
• Fix guarding against zero values in rgb_to_sda by @manthey in #1024
• Use an official mongo test image by @manthey in #1025
• Drop Python 3.6 by @manthey in #1026
• Use a single test girder server for all tests by @manthey in #1027
• Drop Python 3.6 from wheels by @manthey in #1028
• SuperpixelSegmentation-annotation-attributs-added-to-metadata by @subinkitware in #1016
• Instead of output a return parameters file, output an annotation. by @manthey in #1023
• Fix running compute nuclei features on an ROI by @manthey in #1029
• ComputeNucleiFeatures-outputfile-metadata by @subinkitware in #1020
• ColorDeconvolution-annotation attributes added to metadata by @subinkitware in #1015
• SeperateStainsMacenkoPCA-added-metadatafile by @subinkitware in #1019
• Remove overlapping nuclei segmentation by @subinkitware in #1011
• BackgroundIntensity-added-annotation-metadata by @subinkitware in #1021
• Harden compute nuclei features by @manthey in #1034
• updated .py and .xml file to output single annotation file. by @subinkitware in #1035
• Profile Positive pixel count by @subinkitware in #1037
• Add an icon to the docs. by @manthey in #1044
• Resolve issues with sink.crop by @subinkitware in #1036
• Update defaults color deconvolution by @subinkitware in #1033
• remove overlapping nuclei is a default process. by @subinkitware in #1042
• updated depreciated functions in NuclieClassification by @subinkitware in #1047
• Update the version of python used in the docker image. by @manthey in #1048
• Update README by @manthey in #1049
• Abstract nuclei detection by @subinkitware in #1045
• find_stain_index comparison bug by @cooperlab in #1058

Full Changelog: v1.2.8...v1.2.9

Version 1.2.8

What's Changed

• Update tests for minor variations in image decoding by @manthey in #990
• Cleanup typos and minor code eccentricities by @manthey in #991
• Handle a cython numpy deprecation of long_t by @manthey in #995
• Update color_deconvolution.py by @manthey in #997
• Don't specify a basepython in tox.ini by @manthey in #1001
• Support frame/style parameter in Nuclei Detection by @subinkitware in #996
• Record parameters and primary results in annotation metadata by @subinkitware in #999
• Macenko pca out of bounds fix by @m101010 in #1007

New Contributors

• @subinkitware made their first contribution in #996
• @m101010 made their first contribution in #1007

Full Changelog: v1.2.7...v1.2.8

Version 1.2.7

What's Changed

• Support handling frame and style parameters by @manthey in #989

Full Changelog: v1.2.6...v1.2.7

Version 1.2.6

What's Changed

• Include parameters in ppc annotation attributes. by @manthey in #987
• Fixed bug in find_stain_index.py by @Estelle900 in #985
• Add an optional progress callback to superpixel segmentation by @manthey in #988

New Contributors

• @Estelle900 made their first contribution in #985

Full Changelog: v1.2.5...v1.2.6