Also collect json-files for physio conversions

Donders-Institute · Jan 11, 2024 · 5c3b8de · 5c3b8de
1 parent 4805125
commit 5c3b8de
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/bidscoin/plugins/dcm2niix2bids.py b/bidscoin/plugins/dcm2niix2bids.py
@@ -293,6 +293,7 @@ def bidscoiner_plugin(session: Path, bidsmap: dict, bidsses: Path) -> Union[None
             try:
                 physiodata = physio.readphysio(sourcefile)
                 physio.physio2tsv(physiodata, outfolder/bidsname)
+                jsonfiles.update(outfolder.glob(f"{bidsname}.json"))  # add existing created json files: bidsname.json
             except Exception as physioerror:
                 LOGGER.error(f"Could not read/convert physiological file: {sourcefile}\n{physioerror}")
                 continue